Comparative Genomics

Z2894 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d80bdcc2d331ce7554c62c796cf06e5e.TrEMBL.fasta
           12 sequences; 5,079 total letters



Query= Z2894

Length=221
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A5Q2ES75 Exonuclease domain-containing protein [Escherichia col...  461     2e-171
Q8XCK6 Exodeoxyribonuclease X [Escherichia coli O157:H7]              461     2e-171
A0A0H3PMZ7 Exodeoxyribonuclease X [Escherichia coli O157:H7 (stra...  461     2e-171
C3T5Z8 Exodeoxyribonuclease X [Escherichia coli]                      461     2e-171
C3T5Z9 Exonuclease X [Escherichia coli]                               459     7e-171
B7NBJ3 DNA exonuclease X [Escherichia coli O17:K52:H18 (strain UM...  457     4e-170
B1LD28 Exodeoxyribonuclease X [Escherichia coli (strain SMS-3-5 /...  457     4e-170
D6IBF5 Exodeoxyribonuclease X [Escherichia coli B185]                 457     4e-170
Q5L0J3 DNA polymerase III PolC-type [Geobacillus kaustophilus (st...  73.2    2e-18 
H9CDQ6 PolC [Listeria rocourtiae]                                     65.1    6e-16 
Q75VW2 Putative DNA polymerase III epsilon subunit [Hydrogenobact...  58.5    5e-14 
Q8MWB4 DNA polymerase I-like protein B [Trypanosoma brucei]           50.8    8e-11 


>A0A5Q2ES75 Exonuclease domain-containing protein [Escherichia 
coli O157:H7]
Length=220

 Score = 461 bits (1185),  Expect = 2e-171
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>Q8XCK6 Exodeoxyribonuclease X [Escherichia coli O157:H7]
Length=220

 Score = 461 bits (1185),  Expect = 2e-171
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>A0A0H3PMZ7 Exodeoxyribonuclease X [Escherichia coli O157:H7 (strain 
EC869)]
Length=220

 Score = 461 bits (1185),  Expect = 2e-171
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>C3T5Z8 Exodeoxyribonuclease X [Escherichia coli]
Length=220

 Score = 461 bits (1185),  Expect = 2e-171
 Identities = 220/220 (100%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>C3T5Z9 Exonuclease X [Escherichia coli]
Length=220

 Score = 459 bits (1182),  Expect = 7e-171
 Identities = 219/220 (99%), Positives = 220/220 (100%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMAD+TGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADMTGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>B7NBJ3 DNA exonuclease X [Escherichia coli O17:K52:H18 (strain 
UMN026 / ExPEC)]
Length=220

 Score = 457 bits (1177),  Expect = 4e-170
 Identities = 219/220 (99%), Positives = 219/220 (99%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLV PDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>B1LD28 Exodeoxyribonuclease X [Escherichia coli (strain SMS-3-5 
/ SECEC)]
Length=220

 Score = 457 bits (1177),  Expect = 4e-170
 Identities = 219/220 (99%), Positives = 219/220 (99%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLV PDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>D6IBF5 Exodeoxyribonuclease X [Escherichia coli B185]
Length=220

 Score = 457 bits (1177),  Expect = 4e-170
 Identities = 219/220 (99%), Positives = 219/220 (99%), Gaps = 0/220 (0%)

Query  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLV PDRPISPQAMAIHRITEAMVAD
Sbjct  1    MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVAD  60

Query  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120
            KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT
Sbjct  61   KPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKLARRLWPGIKYSNMALYKT  120

Query  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180
            RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR
Sbjct  121  RKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITGRPSLMTTFTFGKYR  180

Query  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220
            GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT
Sbjct  181  GKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLENT  220


>Q5L0J3 DNA polymerase III PolC-type [Geobacillus kaustophilus 
(strain HTA426)]
Length=1444

 Score = 73.2 bits (178),  Expect = 2e-18
 Identities = 52/163 (32%), Positives = 82/163 (50%), Gaps = 19/163 (12%)

Query  4    IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            + D ET GL      I+E+A+V V DG+I++      +P  P+S   M +  IT+ MV D
Sbjct  431  VFDVETTGLSAVYNTIIELAAVKVKDGEIIDRFMSFANPGHPLSVTTMELTGITDEMVKD  490

Query  61   KPWIEDVIPHYY---GSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP  108
             P  ++V+  +    G    VAHNASFD         R    ++    I T++LAR L+P
Sbjct  491  APKPDEVLARFVDWAGDATLVAHNASFDIGFLNTGLARMGRGKIANPVIDTLELARFLYP  550

Query  109  GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIM  151
             +K   +     +K +++      HHRA+YD   T  LL+ ++
Sbjct  551  DLKNHRLNTL-CKKFDIEL---TQHHRAIYDAEATGHLLMRLL  589


>H9CDQ6 PolC [Listeria rocourtiae]
Length=280

 Score = 65.1 bits (157),  Expect = 6e-16
 Identities = 55/180 (31%), Positives = 84/180 (47%), Gaps = 31/180 (17%)

Query  4    IIDTETCGLQG---GIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVAD  60
            + D ET GL      I+E+A V + DG+I++     + P  P+S   + +  IT+ MV  
Sbjct  45   VFDVETTGLSAVYDTIIELAGVKMKDGEIIDKFEAFIDPGHPLSATTINLTGITDDMVKG  104

Query  61   KPWIEDVIPHY---YGSEWYVAHNASFD---------RRVLPEMPGEWICTMKLARRLWP  108
               IE V+ ++    G    +AHNASFD         +  + +     I T++LAR L+P
Sbjct  105  SDPIEVVLQNFKDWSGDAILIAHNASFDMGFINTAYTKVGIEKAENSVIDTLELARFLYP  164

Query  109  GIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGW----TAEQMADI  164
              K   +    T+K N+       HHRA++D   TA L        GW     A++M DI
Sbjct  165  HFKNHRLNTL-TKKFNIILE---QHHRAIFDAEATAYL--------GWKLIKDAKEMRDI  212


>Q75VW2 Putative DNA polymerase III epsilon subunit [Hydrogenobacter 
thermophilus]
Length=191

 Score = 58.5 bits (140),  Expect = 5e-14
 Identities = 57/178 (32%), Positives = 80/178 (45%), Gaps = 22/178 (12%)

Query  5    IDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMVADK  61
            ID ET G       I+EIA V V    I +  S LV+P   +  + + +  IT AM+  K
Sbjct  13   IDIETTGFDEESSDIIEIACVRVEGCIITDRFSTLVNPGYLLPDRIVKLTGITNAMIVGK  72

Query  62   PWIEDVIPH---YYGSEWYVAHNASFDR-------RVL--PEMPGEWICTMKLARRLWPG  109
            P I +V+PH   + G    V H+   D        RVL   +     ICT+ LAR + P 
Sbjct  73   PNIYEVLPHFLRFVGDSIIVGHHVEKDMAFIDKAYRVLYGKKFKHPHICTLNLARNILPD  132

Query  110  IK-YSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQMADITG  166
            +K YS   L     +  +       HRAL D   TA L I+++N   W   ++ D  G
Sbjct  133  LKRYSLKDLADHFNIRYR-----RLHRALDDAETTAYLFIELLNLL-WNHLRVGDYLG  184


>Q8MWB4 DNA polymerase I-like protein B [Trypanosoma brucei]
Length=1404

 Score = 50.8 bits (120),  Expect = 8e-11
 Identities = 28/69 (41%), Positives = 41/69 (59%), Gaps = 6/69 (9%)

Query  2    LRIIDTETCGLQ---GGIVEIASVDVIDGKIVNPMSHLVHPDRPISPQAMAIHRITEAMV  58
            L + D E+ GL      I+E+A+ D ++G      S LV+P RPI PQ+ AIH IT++MV
Sbjct  763  LVVFDIESTGLNTATDAIIEVAAFDPVEG---TSFSSLVNPQRPIPPQSTAIHHITDSMV  819

Query  59   ADKPWIEDV  67
               P + +V
Sbjct  820  QGAPRLSEV  828


 Score = 18.9 bits (37),  Expect = 1.8
 Identities = 6/18 (33%), Positives = 13/18 (72%), Gaps = 0/18 (0%)

Query  49  AIHRITEAMVADKPWIED  66
           A+ ++ EA+ + KP+ +D
Sbjct  28  ALVKVQEALKSSKPFADD  45


 Score = 17.3 bits (33),  Expect = 5.6
 Identities = 6/12 (50%), Positives = 8/12 (67%), Gaps = 0/12 (0%)

Query  118   YKTRKLNVQTPP  129
             YKTR + +  PP
Sbjct  1255  YKTRDVVLNLPP  1266


 Score = 16.5 bits (31),  Expect = 9.8
 Identities = 7/17 (41%), Positives = 8/17 (47%), Gaps = 0/17 (0%)

Query  77   YVAHNASFDRRVLPEMP  93
            YV      D RV  E+P
Sbjct  85   YVMRQQGQDERVNEELP  101



Lambda      K        H        a         alpha
   0.324    0.139    0.446    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 805527


  Database: d80bdcc2d331ce7554c62c796cf06e5e.TrEMBL.fasta
    Posted date:  May 31, 2024  4:56 AM
  Number of letters in database: 5,079
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40