BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4f26a86d9fab19ef7c1c6eccf117f440.SwissProt.fasta
4 sequences; 1,636 total letters
Query= Z2632
Length=155
Score E
Sequences producing significant alignments: (Bits) Value
P76180 Inner membrane protein YdgK [Escherichia coli (strain K12)] 288 1e-105
Q1HVJ2 Latent membrane protein 2 [Epstein-Barr virus (strain AG876)] 33.9 4e-06
P13285 Latent membrane protein 2 [Epstein-Barr virus (strain B95-8)] 33.9 4e-06
P0C729 Latent membrane protein 2 [Epstein-Barr virus (strain GD1)] 33.5 5e-06
>P76180 Inner membrane protein YdgK [Escherichia coli (strain
K12)]
Length=146
Score = 288 bits (736), Expect = 1e-105
Identities = 144/146 (99%), Positives = 145/146 (99%), Gaps = 0/146 (0%)
Query 9 MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGAQALTTQILWGV 68
MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLG QALTTQILWGV
Sbjct 1 MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTFQTLGGQALTTQILWGV 60
Query 69 SFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLL 128
SFITAIA+WYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLL
Sbjct 61 SFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLL 120
Query 129 FTLLATALIVPYFKRSSRVKATFVNP 154
FTLLATALIVPYFKRSSRVKATFVNP
Sbjct 121 FTLLATALIVPYFKRSSRVKATFVNP 146
>Q1HVJ2 Latent membrane protein 2 [Epstein-Barr virus (strain
AG876)]
Length=497
Score = 33.9 bits (76), Expect = 4e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query 30 VALLSTTLALLLYTAALSSPQTFQTLGAQALTTQILWGVSFITAIAMWYYTLWLTIAFFK 89
V ++S TL LL + LSSP TLGA LT + ++ + ++ + TL LT F
Sbjct 272 VTVVSMTLLLLAFVLWLSSPGGLGTLGAALLT--LAAALALLASLILG--TLNLTTMFLL 327
Query 90 RRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFT----LLATALI 137
++W L+ VLL + + P+ + R L+ LLA+ALI
Sbjct 328 --------MLLWTLV-VLLICSSCSSCPLSKILLARLFLYALALLLLASALI 370
Score = 17.7 bits (34), Expect = 0.84
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (4%)
Query 83 LTIAFFKR-RRCVPKHYIIWLLISVLLAVKA-FAFSPVEDGIAVRQLLFTLLATAL 136
L +A+ +R RR I++L ++L V A SP+ + V + LLA L
Sbjct 231 LILAYRRRWRRLTVCGGIMFLACVLVLIVDAVLQLSPLLGAVTVVSMTLLLLAFVL 286
Score = 16.2 bits (30), Expect = 2.6
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 127 LLFTLLATA 135
LLF LLA A
Sbjct 208 LLFALLAAA 216
>P13285 Latent membrane protein 2 [Epstein-Barr virus (strain
B95-8)]
Length=497
Score = 33.9 bits (76), Expect = 4e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query 30 VALLSTTLALLLYTAALSSPQTFQTLGAQALTTQILWGVSFITAIAMWYYTLWLTIAFFK 89
V ++S TL LL + LSSP TLGA LT + ++ + ++ + TL LT F
Sbjct 272 VTVVSMTLLLLAFVLWLSSPGGLGTLGAALLT--LAAALALLASLILG--TLNLTTMFLL 327
Query 90 RRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFT----LLATALI 137
++W L+ VLL + + P+ + R L+ LLA+ALI
Sbjct 328 --------MLLWTLV-VLLICSSCSSCPLSKILLARLFLYALALLLLASALI 370
Score = 17.7 bits (34), Expect = 0.84
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (4%)
Query 83 LTIAFFKR-RRCVPKHYIIWLLISVLLAVKA-FAFSPVEDGIAVRQLLFTLLATAL 136
L +A+ +R RR I++L ++L V A SP+ + V + LLA L
Sbjct 231 LILAYRRRWRRLTVCGGIMFLACVLVLIVDAVLQLSPLLGAVTVVSMTLLLLAFVL 286
Score = 16.2 bits (30), Expect = 2.6
Identities = 7/9 (78%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 127 LLFTLLATA 135
LLF LLA A
Sbjct 208 LLFALLAAA 216
>P0C729 Latent membrane protein 2 [Epstein-Barr virus (strain
GD1)]
Length=496
Score = 33.5 bits (75), Expect = 5e-06
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 17/112 (15%)
Query 30 VALLSTTLALLLYTAALSSPQTFQTLGAQALTTQILWGVSFITAIAMWYYTLWLTIAFFK 89
V ++S TL LL + LSSP TLGA LT + ++ + ++ + TL LT F
Sbjct 271 VTVVSMTLLLLAFVLWLSSPGGLGTLGAALLT--LAAALALLASLILG--TLNLTTMFLL 326
Query 90 RRRCVPKHYIIWLLISVLLAVKAFAFSPVEDGIAVRQLLFT----LLATALI 137
++W L+ VLL + + P+ + R L+ LLA+ALI
Sbjct 327 --------MLLWTLV-VLLICSSCSSCPLTKILLARLFLYALALLLLASALI 369
Score = 18.5 bits (36), Expect = 0.47
Identities = 15/35 (43%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query 104 ISVLLAVKAFAFS---PVEDGIAVRQLLFTLLATA 135
++VL AV FA +ED LLF LLA A
Sbjct 182 VTVLTAVVFFAICLTWRIEDP-PFNSLLFALLAAA 215
Score = 17.7 bits (34), Expect = 0.84
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (4%)
Query 83 LTIAFFKR-RRCVPKHYIIWLLISVLLAVKA-FAFSPVEDGIAVRQLLFTLLATAL 136
L +A+ +R RR I++L ++L V A SP+ + V + LLA L
Sbjct 230 LILAYRRRWRRLTVCGGIMFLACVLVLIVDAVLQLSPLLGAVTVVSMTLLLLAFVL 285
Lambda K H a alpha
0.333 0.141 0.453 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 183488
Database: 4f26a86d9fab19ef7c1c6eccf117f440.SwissProt.fasta
Posted date: Jun 1, 2024 1:21 PM
Number of letters in database: 1,636
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
