BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 18dd665a19710421bb6132c7bcaea65c.SwissProt.fasta
           1 sequences; 314 total letters



Query= Z2603

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76177 Protein YdgH [Escherichia coli (strain K12)]                   608     0.0  


>P76177 Protein YdgH [Escherichia coli (strain K12)]
Length=314

 Score = 608 bits (1567),  Expect = 0.0
 Identities = 313/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%)

Query  1    MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRA  60
            MKLKNTLLASALLSA AFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRA
Sbjct  1    MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTGRFNAIGEAVKAVSRRA  60

Query  61   DKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEP  120
            DKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEP
Sbjct  61   DKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNRVINGVVELPKDQAVLIEP  120

Query  121  FDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKR  180
            FDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKR
Sbjct  121  FDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDANQGGNQRITAFIYKKDAKKR  180

Query  181  IVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTV  240
            IVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTV
Sbjct  181  IVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTASPSSEVGRFFETQSSKGGRYTV  240

Query  241  TLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQ  300
            TLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQ
Sbjct  241  TLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTEVSYQVAKRAAKKGAKYYHITRQWQ  300

Query  301  ERGNNLTVSADLYK  314
            ERGNNLTVSADLYK
Sbjct  301  ERGNNLTVSADLYK  314



Lambda      K        H        a         alpha
   0.315    0.129    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 82656


  Database: 18dd665a19710421bb6132c7bcaea65c.SwissProt.fasta
    Posted date:  May 20, 2024  11:05 AM
  Number of letters in database: 314
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40