BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: bae37d6ca088a32f714a8ade06392f40.TrEMBL.fasta
           5 sequences; 363 total letters



Query= Z2414

Length=80
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A0H3JEN6 Excisionase [Escherichia coli O157:H7]                     169     1e-61
A0A891SE60 Excisionase [Escherichia coli O157:H-]                     154     6e-56
D7XPT4 Excisionase family protein [Escherichia coli MS 84-1]          154     6e-56
A0A3R0K4I0 Excisionase [Shigella dysenteriae]                         154     6e-56
A0A6Y6LBD0 Excisionase XisR [Salmonella enterica subsp. enterica ...  154     6e-56


>A0A0H3JEN6 Excisionase [Escherichia coli O157:H7]
Length=79

 Score = 169 bits (428),  Expect = 1e-61
 Identities = 78/79 (99%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  1   LAPARGDAMAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDS  60
           +APARGDAMAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDS
Sbjct  1   MAPARGDAMAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDS  60

Query  61  KRGIIWYNYPKINQFIKDS  79
           KRGIIWYNYPKINQFIKDS
Sbjct  61  KRGIIWYNYPKINQFIKDS  79


>A0A891SE60 Excisionase [Escherichia coli O157:H-]
Length=71

 Score = 154 bits (390),  Expect = 6e-56
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  9   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  68
           MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN
Sbjct  1   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  60

Query  69  YPKINQFIKDS  79
           YPKINQFIKDS
Sbjct  61  YPKINQFIKDS  71


>D7XPT4 Excisionase family protein [Escherichia coli MS 84-1]
Length=71

 Score = 154 bits (390),  Expect = 6e-56
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  9   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  68
           MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN
Sbjct  1   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  60

Query  69  YPKINQFIKDS  79
           YPKINQFIKDS
Sbjct  61  YPKINQFIKDS  71


>A0A3R0K4I0 Excisionase [Shigella dysenteriae]
Length=71

 Score = 154 bits (390),  Expect = 6e-56
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  9   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  68
           MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN
Sbjct  1   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  60

Query  69  YPKINQFIKDS  79
           YPKINQFIKDS
Sbjct  61  YPKINQFIKDS  71


>A0A6Y6LBD0 Excisionase XisR [Salmonella enterica subsp. enterica 
serovar Typhi str. CT18]
Length=71

 Score = 154 bits (390),  Expect = 6e-56
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  9   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  68
           MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN
Sbjct  1   MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRVSPLGKPDSKRGIIWYN  60

Query  69  YPKINQFIKDS  79
           YPKINQFIKDS
Sbjct  61  YPKINQFIKDS  71



Lambda      K        H        a         alpha
   0.330    0.144    0.483    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 18112


  Database: bae37d6ca088a32f714a8ade06392f40.TrEMBL.fasta
    Posted date:  May 20, 2024  1:37 PM
  Number of letters in database: 363
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40