BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: c83e34a7f0eba209a1ad45266588ed1f.SwissProt.fasta
           5 sequences; 878 total letters



Query= Z1992

Length=77
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AE66 Putative cation transport regulator ChaB [Shigella flexneri]   165     8e-60
P0AE63 Putative cation transport regulator ChaB [Escherichia coli...  165     8e-60
P0AE64 Putative cation transport regulator ChaB [Escherichia coli...  165     8e-60
P0AE65 Putative cation transport regulator ChaB [Escherichia coli...  165     8e-60
A6UW07 Arginine--tRNA ligase [Methanococcus aeolicus (strain ATCC...  31.2    3e-06


>P0AE66 Putative cation transport regulator ChaB [Shigella flexneri]
Length=76

 Score = 165 bits (418),  Expect = 8e-60
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60
           MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV
Sbjct  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60

Query  61  KHEYAKGDDDKWHKKS  76
           KHEYAKGDDDKWHKKS
Sbjct  61  KHEYAKGDDDKWHKKS  76


>P0AE63 Putative cation transport regulator ChaB [Escherichia 
coli (strain K12)]
Length=76

 Score = 165 bits (418),  Expect = 8e-60
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60
           MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV
Sbjct  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60

Query  61  KHEYAKGDDDKWHKKS  76
           KHEYAKGDDDKWHKKS
Sbjct  61  KHEYAKGDDDKWHKKS  76


>P0AE64 Putative cation transport regulator ChaB [Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=76

 Score = 165 bits (418),  Expect = 8e-60
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60
           MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV
Sbjct  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60

Query  61  KHEYAKGDDDKWHKKS  76
           KHEYAKGDDDKWHKKS
Sbjct  61  KHEYAKGDDDKWHKKS  76


>P0AE65 Putative cation transport regulator ChaB [Escherichia 
coli O157:H7]
Length=76

 Score = 165 bits (418),  Expect = 8e-60
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60
           MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV
Sbjct  1   MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAV  60

Query  61  KHEYAKGDDDKWHKKS  76
           KHEYAKGDDDKWHKKS
Sbjct  61  KHEYAKGDDDKWHKKS  76


>A6UW07 Arginine--tRNA ligase [Methanococcus aeolicus (strain 
ATCC BAA-1280 / DSM 17508 / OCM 812 / Nankai-3)]
Length=574

 Score = 31.2 bits (69),  Expect = 3e-06
 Identities = 14/49 (29%), Positives = 26/49 (53%), Gaps = 0/49 (0%)

Query  23   DIYKEAFNSAWDQYKDKEDRRDDASREETAHKVAWAAVKHEYAKGDDDK  71
            ++Y+EA N A  + K + +  ++      AHK+A  AV++   +   DK
Sbjct  386  ELYEEAKNRAVKEIKKRNETTEEEEINNIAHKIAVGAVRYNIVRISPDK  434



Lambda      K        H        a         alpha
   0.316    0.129    0.409    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 42240


  Database: c83e34a7f0eba209a1ad45266588ed1f.SwissProt.fasta
    Posted date:  Jun 1, 2024  5:12 PM
  Number of letters in database: 878
  Number of sequences in database:  5



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40