BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 20b89567088544e5925c431d2ea9fac5.SwissProt.fasta
           1 sequences; 122 total letters



Query= Z1939

Length=123
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76001 Uncharacterized protein YcgJ [Escherichia coli (strain K12)]   251     4e-93


>P76001 Uncharacterized protein YcgJ [Escherichia coli (strain 
K12)]
Length=122

 Score = 251 bits (640),  Expect = 4e-93
 Identities = 120/122 (98%), Positives = 121/122 (99%), Gaps = 0/122 (0%)

Query  1    MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLS  60
            MNMMRIFYIGLSGVGMMFSSMASG+DAGGLQSPACGVVCDPYICVNSDGISPELTRKYL 
Sbjct  1    MNMMRIFYIGLSGVGMMFSSMASGNDAGGLQSPACGVVCDPYICVNSDGISPELTRKYLG  60

Query  61   EKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMC  120
            EKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMC
Sbjct  61   EKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVDGKRSGKINQTTTKMLFMC  120

Query  121  RE  122
            RE
Sbjct  121  RE  122



Lambda      K        H        a         alpha
   0.326    0.140    0.437    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 11990


  Database: 20b89567088544e5925c431d2ea9fac5.SwissProt.fasta
    Posted date:  May 20, 2024  10:01 AM
  Number of letters in database: 122
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40