BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 29661894fa1e705de0065696403143d8.SwissProt.fasta
12 sequences; 1,951 total letters
Query= Z1845
Length=137
Score E
Sequences producing significant alignments: (Bits) Value
Q8CX55 Single-stranded DNA-binding protein [Oceanobacillus iheyen... 58.9 1e-15
Q814G6 Single-stranded DNA-binding protein [Bacillus cereus (stra... 57.8 4e-15
Q9WZ73 Single-stranded DNA-binding protein [Thermotoga maritima (... 56.6 7e-15
Q81JI3 Single-stranded DNA-binding protein [Bacillus anthracis] 55.5 3e-14
Q8YAR8 Single-stranded DNA-binding protein 1 [Listeria monocytoge... 53.9 1e-13
Q92FR5 Single-stranded DNA-binding protein 1 [Listeria innocua se... 51.2 1e-12
Q928X8 Single-stranded DNA-binding protein 3 [Listeria innocua se... 50.4 2e-12
Q87DQ5 Single-stranded DNA-binding protein [Xylella fastidiosa (s... 47.8 2e-11
Q8R6M2 Single-stranded DNA-binding protein [Caldanaerobacter subt... 47.4 2e-11
Q9PDI7 Single-stranded DNA-binding protein 2 [Xylella fastidiosa ... 46.6 6e-11
C0SPB6 Single-stranded DNA-binding protein B [Bacillus subtilis (... 42.4 1e-09
Q9X8U3 Single-stranded DNA-binding protein 2 [Streptomyces coelic... 38.5 6e-08
>Q8CX55 Single-stranded DNA-binding protein [Oceanobacillus iheyensis
(strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954
/ HTE831)]
Length=161
Score = 58.9 bits (141), Expect = 1e-15
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 11/127 (9%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP ++ T G + +AV+ P S Q + +++ + + + A+
Sbjct 1 MLNRVVLVGRLTRDPDLRYTPNGVAVANFNIAVNRPFSNQQGNREADFINCVIWRRPAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISARAARPGGNRRKTTGTQG 119
LA + +KG + V G +Q + GQ+G+T +V+ADSV +T G+QG
Sbjct 61 LANYMKKGSMVGVDGRIQTRNFEGQDGKTVYVTEVVADSV----------QFLETKGSQG 110
Query 120 NQPPAGG 126
Q +GG
Sbjct 111 GQDSSGG 117
>Q814G6 Single-stranded DNA-binding protein [Bacillus cereus (strain
ATCC 14579 / DSM 31 / CCUG 7414 / JCM 2152 / NBRC 15305
/ NCIMB 9373 / NCTC 2599 / NRRL B-3711)]
Length=170
Score = 57.8 bits (138), Expect = 4e-15
Identities = 38/138 (28%), Positives = 69/138 (50%), Gaps = 11/138 (8%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP ++ T G + +AV+ + Q + +++ + + KQA+
Sbjct 1 MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISARAARPGGNRRKTTGTQG 119
+A + +KG +A V G +Q + GQ+G+ +V+A+SV GG +R +
Sbjct 61 VANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSF---- 116
Query 120 NQPPAG------GDDPYG 131
NQ P+G G +P+G
Sbjct 117 NQQPSGAGFGNQGSNPFG 134
>Q9WZ73 Single-stranded DNA-binding protein [Thermotoga maritima
(strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 /
MSB8)]
Length=141
Score = 56.6 bits (135), Expect = 7e-15
Identities = 35/99 (35%), Positives = 54/99 (55%), Gaps = 3/99 (3%)
Query 4 QIAAYGRLVDDPQVKQTSKGTPMTLARMAVS-LPCSQA-QDGQATLWLSVIAFGKQADFL 61
+I GRLV DP+ + T GTP+T +AV +P A D Q T + ++ FG+ A+F
Sbjct 6 KIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRKNAPDDAQTTDFFRIVTFGRLAEFA 65
Query 62 AKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV 99
+ KG + V G M++ +W GE R +V+A+ V
Sbjct 66 RTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVV 104
>Q81JI3 Single-stranded DNA-binding protein [Bacillus anthracis]
Length=172
Score = 55.5 bits (132), Expect = 3e-14
Identities = 36/134 (27%), Positives = 66/134 (49%), Gaps = 9/134 (7%)
Query 4 QIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADFLAK 63
++ GRL DP ++ T G + +AV+ + Q + +++ + + KQA+ +A
Sbjct 3 RVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVAN 62
Query 64 H-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISARAARPGGNRRKTTGTQGNQP 122
+ +KG +A V G +Q + GQ+G+ +V+A+SV GG +R G+ QP
Sbjct 63 YLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPRNGGGEQR---GSFNQQP 119
Query 123 PAGG-----DDPYG 131
G +P+G
Sbjct 120 SGAGFGNQSSNPFG 133
>Q8YAR8 Single-stranded DNA-binding protein 1 [Listeria monocytogenes
serovar 1/2a (strain ATCC BAA-679 / EGD-e)]
Length=178
Score = 53.9 bits (128), Expect = 1e-13
Identities = 32/131 (24%), Positives = 65/131 (50%), Gaps = 3/131 (2%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP+++ T G + +AV+ + Q + +++ + + K A+
Sbjct 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV--ISARAARPGGNRRKTTGT 117
+A +KG +A V G +Q + G +G+ +++A+SV + R + GG +G
Sbjct 61 VANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQSGN 120
Query 118 QGNQPPAGGDD 128
N +GG++
Sbjct 121 NNNNYNSGGNN 131
>Q92FR5 Single-stranded DNA-binding protein 1 [Listeria innocua
serovar 6a (strain ATCC BAA-680 / CLIP 11262)]
Length=179
Score = 51.2 bits (121), Expect = 1e-12
Identities = 32/134 (24%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP+++ T G + +AV+ + Q + +++ + + K A+
Sbjct 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV--ISARAARPGGNRRKTTGT 117
+A +KG +A V G +Q + G +G+ +++A+SV + R + GG G
Sbjct 61 VANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNNYQGG 120
Query 118 QGNQPPAGGDDPYG 131
N G + +G
Sbjct 121 NNNNNYNNGGNNFG 134
>Q928X8 Single-stranded DNA-binding protein 3 [Listeria innocua
serovar 6a (strain ATCC BAA-680 / CLIP 11262)]
Length=160
Score = 50.4 bits (119), Expect = 2e-12
Identities = 30/123 (24%), Positives = 60/123 (49%), Gaps = 3/123 (2%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP+++ T G + +AV+ P Q Q ++ + + K A+
Sbjct 1 MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNGQGEQEADFIQCVVWRKPAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV--ISARAARPGGNRRKTTGT 117
+A +KG +A V G +Q + G +G+ +++A+SV + ++ GG+ +
Sbjct 61 VANFLKKGSLAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQFLESKQNGAGGSTSNNNQS 120
Query 118 QGN 120
+ N
Sbjct 121 ETN 123
>Q87DQ5 Single-stranded DNA-binding protein [Xylella fastidiosa
(strain Temecula1 / ATCC 700964)]
Length=164
Score = 47.8 bits (112), Expect = 2e-11
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 27/159 (17%)
Query 4 QIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDG---QATLWLSVIAFGKQADF 60
++ G L +DP +K T G +T +A + + +DG + T W V FGK +
Sbjct 7 KVILVGNLGNDPDIKYTQGGMTITTISLATT-SVRKDKDGNTQERTEWHRVKFFGKLGEI 65
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISARAARPGGN--------R 111
++ +KG + G+++ ++TGQ+G+ R +++AD + GG +
Sbjct 66 AGEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQ 125
Query 112 RKTTGTQGNQP--------------PAGGDDPYGDGIPF 136
R+T+ Q P P DD D IPF
Sbjct 126 RQTSQRQDYAPRRQTRQPSQSPQSSPPPMDDFADDDIPF 164
>Q8R6M2 Single-stranded DNA-binding protein [Caldanaerobacter
subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007
/ NBRC 100824 / MB4)]
Length=150
Score = 47.4 bits (111), Expect = 2e-11
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M ++ GRL DP ++ TS P+T +AV+ + T ++ ++ + K A+
Sbjct 1 MLNKVILIGRLTKDPVMRYTSDMVPVTTFTLAVNRNYVSQSGERPTDFIPIVTWRKLAEI 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV 99
A + +KG + +V+G++Q W +G +V+AD V
Sbjct 61 CANNLKKGRLVAVTGSIQTRTWDDSSGNRHWVTEVVADDV 100
>Q9PDI7 Single-stranded DNA-binding protein 2 [Xylella fastidiosa
(strain 9a5c)]
Length=164
Score = 46.6 bits (109), Expect = 6e-11
Identities = 38/158 (24%), Positives = 66/158 (42%), Gaps = 25/158 (16%)
Query 4 QIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDG--QATLWLSVIAFGKQADFL 61
++ G L +DP +K T G +T +A + + + T W V FGK +
Sbjct 7 KVILVGNLGNDPDIKYTQGGMTITTISLATTSVRKDKEGNTQERTEWHRVKFFGKLGEIA 66
Query 62 AKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSVISARAARPGGN--------RR 112
++ +KG + G+++ ++TGQ+G+ R +++AD + GG +R
Sbjct 67 GEYLRKGSQCYIEGSIRYDKFTGQDGQERYVTEIVADEMQMLGGRSDGGGMGGGGERPQR 126
Query 113 KTTGTQGNQP--------------PAGGDDPYGDGIPF 136
+T+ Q P P DD D IPF
Sbjct 127 QTSQRQDYAPRRQARQPSQSPQSSPPPMDDFADDDIPF 164
>C0SPB6 Single-stranded DNA-binding protein B [Bacillus subtilis
(strain 168)]
Length=113
Score = 42.4 bits (98), Expect = 1e-09
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query 1 MTAQIAAYGRLVDDPQVKQTSKGTPMTLARMAVSLPCSQAQDGQATLWLSVIAFGKQADF 60
M Q+ GRL DP ++ TS G + +AV+ A +++ + K A+
Sbjct 1 MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAEN 60
Query 61 LAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV 99
A + QKG + VSG +Q + + G +V+AD+V
Sbjct 61 TALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTV 100
>Q9X8U3 Single-stranded DNA-binding protein 2 [Streptomyces coelicolor
(strain ATCC BAA-471 / A3(2) / M145)]
Length=199
Score = 38.5 bits (88), Expect = 6e-08
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 17/137 (12%)
Query 5 IAAYGRLVDDPQVKQTSKGTPMTLARMAVSLP------CSQAQDGQATLWLSVIAFGKQA 58
I G LVDDP+++ T G + R+A S P ++ +DG+ +L+L+ + + A
Sbjct 7 ITVVGNLVDDPELRFTPSGAAVAKFRVA-STPRTFDRQTNEWKDGE-SLFLTCSVWRQAA 64
Query 59 DFLAKH-QKGDVASVSGTMQVSQWTGQNGETRQGYQVIADSV-ISARAARPGGNRRKTTG 116
+ +A+ Q+G V G ++ + + G R Y++ D V S R+A K T
Sbjct 65 ENVAESLQRGMRVIVQGRLKQRSYEDREGVKRTVYELDVDEVGASLRSA-----TAKVTK 119
Query 117 TQGNQPPAGGDDPYGDG 133
T G GG YG G
Sbjct 120 TSGQ--GRGGQGGYGGG 134
Score = 21.6 bits (44), Expect = 0.039
Identities = 18/57 (32%), Positives = 22/57 (39%), Gaps = 1/57 (2%)
Query 81 WTGQNGETRQGYQVIADSVISARAARPGGNR-RKTTGTQGNQPPAGGDDPYGDGIPF 136
W G G +QG AD + A GG + G G +GG Y D PF
Sbjct 143 WGGGPGGGQQGGGAPADDPWATGGAPAGGQQGGGGQGGGGWGGGSGGGGGYSDEPPF 199
Lambda K H a alpha
0.318 0.132 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 164535
Database: 29661894fa1e705de0065696403143d8.SwissProt.fasta
Posted date: Jun 1, 2024 1:23 PM
Number of letters in database: 1,951
Number of sequences in database: 12
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
