Comparative Genomics

Z1785 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 12d50cd2a6a8286c8971f8bc41884fc4.SwissProt.fasta
           11 sequences; 1,326 total letters



Query= Z1785

Length=124
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9MCN8 Crossover junction endodeoxyribonuclease rusA [Enterobacte...  147     3e-51
Q1RCY4 Crossover junction endodeoxyribonuclease RusA [Escherichia...  83.2    1e-25
P0AG75 Crossover junction endodeoxyribonuclease RusA [Escherichia...  83.2    1e-25
Q0TIR3 Crossover junction endodeoxyribonuclease RusA [Escherichia...  83.2    1e-25
A1AA51 Crossover junction endodeoxyribonuclease RusA [Escherichia...  83.2    1e-25
P0AG74 Crossover junction endodeoxyribonuclease RusA [Escherichia...  83.2    1e-25
Q37873 Crossover junction endodeoxyribonuclease rusA [Enterobacte...  82.4    2e-25
Q8X707 Crossover junction endodeoxyribonuclease RusA [Escherichia...  81.6    4e-25
Q3YZH8 Crossover junction endodeoxyribonuclease RusA [Shigella so...  81.3    6e-25
A7ZJG7 Crossover junction endodeoxyribonuclease RusA [Escherichia...  78.6    6e-24
O67766 Crossover junction endodeoxyribonuclease RusA [Aquifex aeo...  40.8    2e-09


>Q9MCN8 Crossover junction endodeoxyribonuclease rusA [Enterobacteria 
phage HK97]
Length=120

 Score = 147 bits (372),  Expect = 3e-51
 Identities = 68/113 (60%), Positives = 87/113 (77%), Gaps = 0/113 (0%)

Query  4    EFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPP  63
            +FVLPYPP++NTYWRRRGS Y++S  G++YR+ V  I+RQ +L +    RL IK+IA+ P
Sbjct  5    QFVLPYPPSLNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVP  64

Query  64   DKRRRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEI  116
            D RRRDLDNILK  LD+L HA    DDEQFD+I ++RG  VPGGRLG+KI E+
Sbjct  65   DSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITEL  117


>Q1RCY4 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli (strain UTI89 / UPEC)]
Length=120

 Score = 83.2 bits (204),  Expect = 1e-25
 Identities = 47/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>P0AG75 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=120

 Score = 83.2 bits (204),  Expect = 1e-25
 Identities = 47/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>Q0TIR3 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli O6:K15:H31 (strain 536 / UPEC)]
Length=120

 Score = 83.2 bits (204),  Expect = 1e-25
 Identities = 47/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>A1AA51 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli O1:K1 / APEC]
Length=120

 Score = 83.2 bits (204),  Expect = 1e-25
 Identities = 47/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>P0AG74 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli (strain K12)]
Length=120

 Score = 83.2 bits (204),  Expect = 1e-25
 Identities = 47/115 (41%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>Q37873 Crossover junction endodeoxyribonuclease rusA [Enterobacteria 
phage 82]
Length=120

 Score = 82.4 bits (202),  Expect = 2e-25
 Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       +S  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKGSMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKASFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>Q8X707 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli O157:H7]
Length=120

 Score = 81.6 bits (200),  Expect = 4e-25
 Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       +S  G+ YR  VA I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKGSMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GG+L + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITEL--GNE  120


>Q3YZH8 Crossover junction endodeoxyribonuclease RusA [Shigella 
sonnei (strain Ss046)]
Length=120

 Score = 81.3 bits (199),  Expect = 6e-25
 Identities = 45/115 (39%), Positives = 65/115 (57%), Gaps = 2/115 (2%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       +S  G+ YR  V  I++   L + L+  + I+I    PD+R
Sbjct  8    LPWPPSNNRYYRHNRGRTHISAEGQAYRDNVTRIIKNAMLDIGLAMPVKIRIECHMPDRR  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEIRGGND  121
            RRDLDN+ KA  DALT A   +DD Q  +  +V+     GGRL + I E+  GN+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGRLELTITEM--GNE  120


>A7ZJG7 Crossover junction endodeoxyribonuclease RusA [Escherichia 
coli O139:H28 (strain E24377A / ETEC)]
Length=120

 Score = 78.6 bits (192),  Expect = 6e-24
 Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 0/110 (0%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP+PP+ N Y+R       VS  G+ YR  VA I++   L + L+  + I+I    PD+ 
Sbjct  8    LPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKNAMLDIGLAMPVKIRIECHMPDRC  67

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKIYEI  116
            RRDLDN+ KA  DALT A   +DDE   +  +V+     GG+L + I E+
Sbjct  68   RRDLDNLQKAAFDALTKAGFWLDDELVVDYRVVKMPVTKGGKLELTITEL  117


>O67766 Crossover junction endodeoxyribonuclease RusA [Aquifex 
aeolicus (strain VF5)]
Length=126

 Score = 40.8 bits (94),  Expect = 2e-09
 Identities = 29/107 (27%), Positives = 53/107 (50%), Gaps = 3/107 (3%)

Query  7    LPYPPTVNTYWRRRGSTYFVSKAGERYRRAVALIVRQQRLKLSLSGRLAIKIIAEPPDKR  66
            LP P + N Y R +G   F       +       +R+Q    ++   +++ I    P++R
Sbjct  15   LPVPKS-NRYIRPKGGKVFKPPRVTNWEARAIWELREQFKGDAIDYEISVDITLILPNRR  73

Query  67   RRDLDNILKAPLDALTHAEVLIDDEQFDEINIVRGQPVPGGRLGVKI  113
            +RD+DN+LK+  D +  A V+ +D    E++ V+   +  G+ GV I
Sbjct  74   KRDIDNMLKSLWDVMEKAGVIKNDNLIFEVHTVK--KIEKGKEGVII  118



Lambda      K        H        a         alpha
   0.327    0.146    0.435    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 97728


  Database: 12d50cd2a6a8286c8971f8bc41884fc4.SwissProt.fasta
    Posted date:  May 31, 2024  8:16 AM
  Number of letters in database: 1,326
  Number of sequences in database:  11



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40