BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 368cbb385327ee911de94fe9942fe2d8.SwissProt.fasta
           1 sequences; 349 total letters



Query= Z1784

Length=350
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P76162 Uncharacterized protein YdfU [Escherichia coli (strain K12)]   625     0.0  


>P76162 Uncharacterized protein YdfU [Escherichia coli (strain 
K12)]
Length=349

 Score = 625 bits (1612),  Expect = 0.0
 Identities = 296/348 (85%), Positives = 321/348 (92%), Gaps = 0/348 (0%)

Query  1    VRVLLRPVLVPELGLVIVKPGRESMSAFHNGRILVEPEPKSMRALPSGVVPAVHQPLAED  60
            +RVLLRPVLVPELGLV++KPGRES+  FHN R+LVEPEPKSMR LPSGVVPAV QPLAED
Sbjct  1    MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRNLPSGVVPAVRQPLAED  60

Query  61   KSLLPFFSDERVIRAAGGAGALSDWLLRHVKSCQWPHGDYHHSETVIHRYGTGAMVLCWH  120
            K+LLPFFS+ERVIRAAGG GALSDWLLRHV SCQWP+GDYHH+ETVIHRYGTGAMVLCWH
Sbjct  61   KTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHHTETVIHRYGTGAMVLCWH  120

Query  121  CDNQLRDQTSESLEQLAQQNLAAWMIDVIRHAMNGIQERELSLAELSWWAVCNQVVDALP  180
            CDNQLRDQTSESLE LAQQNL AW+IDVIRHA++G QERELSLAELSWWAVCNQVVDALP
Sbjct  121  CDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERELSLAELSWWAVCNQVVDALP  180

Query  181  EAVSRRSLGLPAEKIRSVYRESDIIPGEQTATSILKQRTKNIALPPHTHQQQNPPQEKTV  240
            EAVSRRSLGLPAEKI SVYRESDI+PGE TATSILKQRTKN+A  P+ HQQQ  PQEKTV
Sbjct  181  EAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQRTKNLAPLPYAHQQQKSPQEKTV  240

Query  241  VSIAVDPESPKSFMKRPKRRRWVNEKYTRWVKTQPCACCGKPADDPHHLIGHGQGGMGTK  300
            VSI VDPESP+SFMK PKRRRWV EKYTRWVKTQPCACCG PADDPHHLIGHGQGGMGTK
Sbjct  241  VSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPCACCGMPADDPHHLIGHGQGGMGTK  300

Query  301  SHDIFTLPLCREHHNELHADPLAFEEKHGSQVDLIFRFLDHAFATGVL  348
            +HD+F LPLCR+HHNELH D +AFE+K+GSQ++LIFRF+D A A GVL
Sbjct  301  AHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLELIFRFIDRALAIGVL  348



Lambda      K        H        a         alpha
   0.322    0.136    0.433    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 102720


  Database: 368cbb385327ee911de94fe9942fe2d8.SwissProt.fasta
    Posted date:  May 20, 2024  7:00 AM
  Number of letters in database: 349
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40