BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: eaed3634714359e36d87fed7b39fce08.SwissProt.fasta
           16 sequences; 3,766 total letters



Query= Z1287

Length=234
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q8X5E4 Probable fimbrial chaperone protein ElfD [Escherichia coli...  466     3e-173
P75856 Probable fimbrial chaperone protein ElfD [Escherichia coli...  461     3e-171
P62610 Chaperone protein FocC [Escherichia coli O6:H1 (strain CFT...  177     4e-59 
P62609 Chaperone protein FocC [Escherichia coli]                      177     4e-59 
P59590 Chaperone protein FimC [Escherichia coli O6:H1 (strain CFT...  174     1e-57 
P31697 Chaperone protein FimC [Escherichia coli (strain K12)]         172     4e-57 
P37923 Chaperone protein FimC [Salmonella typhimurium (strain LT2...  163     8e-54 
P77249 Probable fimbrial chaperone SfmC [Escherichia coli (strain...  157     2e-51 
Q8X5K6 Probable fimbrial chaperone LpfB [Escherichia coli O157:H7]    140     6e-45 
P43661 Chaperone protein LpfB [Salmonella typhimurium (strain LT2...  126     2e-39 
P42914 Probable fimbrial chaperone YraI [Escherichia coli (strain...  120     3e-37 
P40876 Uncharacterized fimbrial chaperone YcbF [Escherichia coli ...  110     4e-33 
P53520 Chaperone protein PmfD [Proteus mirabilis (strain HI4320)]     103     2e-30 
P25402 Chaperone protein FanE [Escherichia coli]                      101     8e-30 
P33409 Chaperone protein FimB/FhaD [Bordetella pertussis (strain ...  98.6    2e-28 
P53516 Chaperone protein AfaB [Escherichia coli]                      98.2    2e-28 


>Q8X5E4 Probable fimbrial chaperone protein ElfD [Escherichia 
coli O157:H7]
Length=233

 Score = 466 bits (1199),  Expect = 3e-173
 Identities = 233/233 (100%), Positives = 233/233 (100%), Gaps = 0/233 (0%)

Query  1    MKTCITKGIVTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP  60
            MKTCITKGIVTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP
Sbjct  1    MKTCITKGIVTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP  60

Query  61   YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP  120
            YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
Sbjct  61   YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP  120

Query  121  STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL  180
            STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL
Sbjct  121  STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL  180

Query  181  TDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS  233
            TDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
Sbjct  181  TDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS  233


>P75856 Probable fimbrial chaperone protein ElfD [Escherichia 
coli (strain K12)]
Length=233

 Score = 461 bits (1186),  Expect = 3e-171
 Identities = 229/233 (98%), Positives = 232/233 (99%), Gaps = 0/233 (0%)

Query  1    MKTCITKGIVTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVP  60
            MKTCITKGIVTVSLTAILLSCSS WAAGKGG+GLAATRLVYSEGEEQISLGVRNTSPDVP
Sbjct  1    MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVP  60

Query  61   YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP  120
            YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP
Sbjct  61   YLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVP  120

Query  121  STTKREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL  180
            STTKR+EGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL
Sbjct  121  STTKRKEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITL  180

Query  181  TDLKIGGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS  233
            TDLKIGGK+VKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS
Sbjct  181  TDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS  233


>P62610 Chaperone protein FocC [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=227

 Score = 177 bits (448),  Expect = 4e-59
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 2/201 (1%)

Query  31   GVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPA  90
            GV L ATR++Y EG++Q+ L V N      YLIQSW+   + KK A F+ITPPLF +   
Sbjct  22   GVALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGK  81

Query  91   NENLLRIM-YIGAPLAKDRETLFFTSVRAVPSTTKREEG-NTLKIATQSVIKLFWRPKGL  148
             EN LRI+      + +DRE+LF+ +V+A+P+  K + G N L+ A  S IKL +RP+GL
Sbjct  82   KENTLRIIDATNGQMPEDRESLFWVNVKAIPAMDKAKTGENYLQFAIVSRIKLLYRPQGL  141

Query  149  AYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKG  208
              P  +AP KL  T     +T+ NPTPY++T+TDLK G K ++N M+ P  K   ++P G
Sbjct  142  VIPPEQAPGKLEFTRENGGLTLFNPTPYYLTVTDLKAGNKSLENTMVPPQGKVTVNIPGG  201

Query  209  AKNSSVTYRTINDYGAETPQL  229
                 +TY+TINDYGA T Q+
Sbjct  202  YTGGDITYKTINDYGALTEQV  222


>P62609 Chaperone protein FocC [Escherichia coli]
Length=227

 Score = 177 bits (448),  Expect = 4e-59
 Identities = 91/201 (45%), Positives = 127/201 (63%), Gaps = 2/201 (1%)

Query  31   GVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPA  90
            GV L ATR++Y EG++Q+ L V N      YLIQSW+   + KK A F+ITPPLF +   
Sbjct  22   GVALGATRVIYPEGQKQVQLAVTNNDDKSSYLIQSWIENAEGKKDARFVITPPLFSMQGK  81

Query  91   NENLLRIM-YIGAPLAKDRETLFFTSVRAVPSTTKREEG-NTLKIATQSVIKLFWRPKGL  148
             EN LRI+      + +DRE+LF+ +V+A+P+  K + G N L+ A  S IKL +RP+GL
Sbjct  82   KENTLRIIDATNGQMPEDRESLFWVNVKAIPAMDKAKTGENYLQFAIVSRIKLLYRPQGL  141

Query  149  AYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLVKNQMISPFDKYQFSLPKG  208
              P  +AP KL  T     +T+ NPTPY++T+TDLK G K ++N M+ P  K   ++P G
Sbjct  142  VIPPEQAPGKLEFTRENGGLTLFNPTPYYLTVTDLKAGNKSLENTMVPPQGKVTVNIPGG  201

Query  209  AKNSSVTYRTINDYGAETPQL  229
                 +TY+TINDYGA T Q+
Sbjct  202  YTGGDITYKTINDYGALTEQV  222


>P59590 Chaperone protein FimC [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=241

 Score = 174 bits (440),  Expect = 1e-57
 Identities = 97/224 (43%), Positives = 140/224 (63%), Gaps = 5/224 (2%)

Query  10   VTVSLTAILLSCSSTWAAGKG--GVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWV  67
            +T  L A +L   +   AG+   GV L ATR++Y  G++Q+ L V N   +  YLIQSWV
Sbjct  14   ITFCLLAGILMFMAMVVAGRAEAGVALGATRVIYPAGQKQVQLAVTNNDENSTYLIQSWV  73

Query  68   MTPDNKKSADFIITPPLFVLNPANENLLRIM-YIGAPLAKDRETLFFTSVRAVPSTTKRE  126
               D  K   FI+TPPLF +    EN LRI+      L +DRE+LF+ +V+A+PS  K +
Sbjct  74   ENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSK  133

Query  127  -EGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKI  185
               NTL++A  S IKL++RP  LA P  +A  KLR   SA+ +T+ NPTPY++T+T+L  
Sbjct  134  LTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNA  193

Query  186  GGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQL  229
            G ++++N ++ P  +    LP  A  S++TYRTINDYGA TP++
Sbjct  194  GTRVLENALVPPMGESAVKLPSDA-GSNITYRTINDYGALTPKM  236


>P31697 Chaperone protein FimC [Escherichia coli (strain K12)]
Length=241

 Score = 172 bits (436),  Expect = 4e-57
 Identities = 97/224 (43%), Positives = 139/224 (62%), Gaps = 5/224 (2%)

Query  10   VTVSLTAILLSCSSTWAAGKG--GVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWV  67
            +T  L A +L   +   AG+   GV L ATR++Y  G++Q  L V N   +  YLIQSWV
Sbjct  14   ITFCLLAGILMFMAMMVAGRAEAGVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWV  73

Query  68   MTPDNKKSADFIITPPLFVLNPANENLLRIM-YIGAPLAKDRETLFFTSVRAVPSTTKRE  126
               D  K   FI+TPPLF +    EN LRI+      L +DRE+LF+ +V+A+PS  K +
Sbjct  74   ENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSK  133

Query  127  -EGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKI  185
               NTL++A  S IKL++RP  LA P  +A  KLR   SA+ +T+ NPTPY++T+T+L  
Sbjct  134  LTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSANSLTLINPTPYYLTVTELNA  193

Query  186  GGKLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQL  229
            G ++++N ++ P  +    LP  A  S++TYRTINDYGA TP++
Sbjct  194  GTRVLENALVPPMGESTVKLPSDA-GSNITYRTINDYGALTPKM  236


>P37923 Chaperone protein FimC [Salmonella typhimurium (strain 
LT2 / SGSC1412 / ATCC 700720)]
Length=230

 Score = 163 bits (413),  Expect = 8e-54
 Identities = 86/219 (39%), Positives = 129/219 (59%), Gaps = 3/219 (1%)

Query  10   VTVSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMT  69
            + V    +L   +S      GG+ L ATR++Y    +Q SL + N+     YL+ SW+  
Sbjct  5    IKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIEN  64

Query  70   PDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKR--EE  127
               +K   FI+TPPLFV  P +EN LRI+Y G PL  DRE+LF+ +V+A+PS  K   E 
Sbjct  65   NAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDKSHIEG  124

Query  128  GNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGG  187
             N L++A  S IKLF RP  L     +AP  L+ +   + + ++NP+ Y++TL ++ +G 
Sbjct  125  KNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSRVGNHLKITNPSAYYLTLVNISVGA  184

Query  188  KLVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAET  226
            K + N MI+P    Q  LP GA+  +VT++++NDYGA T
Sbjct  185  KKIDNVMIAPKSDMQIPLPTGAQ-GNVTFQSVNDYGALT  222


>P77249 Probable fimbrial chaperone SfmC [Escherichia coli (strain 
K12)]
Length=230

 Score = 157 bits (398),  Expect = 2e-51
 Identities = 82/207 (40%), Positives = 124/207 (60%), Gaps = 3/207 (1%)

Query  23   STWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITP  82
            S  A   GG+ L ATR++Y    +Q ++ +RN+  +  +L+ SW+      K   FIITP
Sbjct  18   SASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITP  77

Query  83   PLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKR--EEGNTLKIATQSVIK  140
            PLFV  P +EN LRI+Y G PLA DRE+LF+ +V+ +PS  K      N L++A  S +K
Sbjct  78   PLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMK  137

Query  141  LFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLVKNQMISPFDK  200
            LF RP  L     EAP  L+ + S + + V NP+P+++TL +L++G + + N M +P   
Sbjct  138  LFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVN  197

Query  201  YQFSLPKGAKNSSVTYRTINDYGAETP  227
             Q  LP G +   + ++T+NDYG+ TP
Sbjct  198  SQIPLPSGVQ-GKLKFQTVNDYGSVTP  223


>Q8X5K6 Probable fimbrial chaperone LpfB [Escherichia coli O157:H7]
Length=232

 Score = 140 bits (354),  Expect = 6e-45
 Identities = 83/212 (39%), Positives = 124/212 (58%), Gaps = 3/212 (1%)

Query  16   AILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKS  75
            A+ LS   + +   GGVGL++TR++Y   +++ SL V+N S    +LIQSWV      K 
Sbjct  11   ALALSLFLSQSVLAGGVGLSSTRVIYDGSKKEASLTVQNKSKTEEFLIQSWVDDAAGSKK  70

Query  76   ADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEG-NTLKIA  134
              FIITPPLF L+P   N+LRI+ I   L +DRE++++ +V+A+PS +   E  N L+IA
Sbjct  71   TPFIITPPLFKLDPEKNNILRIVNITPGLPQDRESVYWVNVKAIPSKSDDSENKNVLQIA  130

Query  135  TQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGK-LVKNQ  193
             ++ IKLF+RP GL   +  AP +LR T + + + V NPT + IT        K + K  
Sbjct  131  VRTRIKLFYRPAGLKGDVKTAPNELRFTRNGNQLRVDNPTVFNITFNQFFANDKEIEKAG  190

Query  194  MISPFDKYQFSLPKGAKN-SSVTYRTINDYGA  224
            M+        +LP G  + S + Y TIND+G+
Sbjct  191  MVPAKGALNITLPAGVGSVSKIKYNTINDFGS  222


>P43661 Chaperone protein LpfB [Salmonella typhimurium (strain 
LT2 / SGSC1412 / ATCC 700720)]
Length=232

 Score = 126 bits (317),  Expect = 2e-39
 Identities = 78/216 (36%), Positives = 124/216 (57%), Gaps = 5/216 (2%)

Query  12   VSLTAILLSCSSTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPD  71
            +S TA++L+  +  +   GGV L++TR++Y    ++ SL V N S    +LIQSW+   +
Sbjct  7    ISCTALVLALIAQNSFA-GGVALSSTRVIYDGSRKEASLTVNNKSTTDEFLIQSWIDDAN  65

Query  72   NKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEG-NT  130
              K   FIITPPLF L+P   N+LRI+     L +DRE++++ +V+A+P+ ++  E  N 
Sbjct  66   GNKKTPFIITPPLFKLSPTKNNVLRIVNTTNTLPQDRESVYWINVKAIPAKSEDAEAKNV  125

Query  131  LKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSS-ADMVTVSNPTPYFITLTDLKIGGK-  188
            L+IA ++ +KLF+RP GL     +   KL+ TS+ A+ + V NP+ + +T       G+ 
Sbjct  126  LQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAGANQIKVENPSAFNLTFNKFYANGRD  185

Query  189  LVKNQMISPFDKYQFSLPKG-AKNSSVTYRTINDYG  223
            + K  M+         LP G  K S V Y  IND+G
Sbjct  186  IEKTGMVPAKGSLNIELPAGTGKVSEVKYNIINDFG  221


>P42914 Probable fimbrial chaperone YraI [Escherichia coli (strain 
K12)]
Length=231

 Score = 120 bits (302),  Expect = 3e-37
 Identities = 74/219 (34%), Positives = 119/219 (54%), Gaps = 10/219 (5%)

Query  16   AILLSCSSTWAAGK---GGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDN  72
            A++L+   ++  G+   GG+ L  TR++Y    ++ +L V N   + PYL+QSWV   D 
Sbjct  7    AVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDG  66

Query  73   KKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREE--GNT  130
            K  A FIITPPLF L   +++ LRI+     L +++E+LF+ +VRA+P+  K ++   N 
Sbjct  67   KSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDDVNANE  126

Query  131  LKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIG--GK  188
            L +  ++ IK+F+RP  L   + +A   L    S   + + NPT Y++    L +     
Sbjct  127  LTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDL  186

Query  189  LVKNQMISPFDKYQFSLP-KGAKNSSVTYRTINDYGAET  226
              K + I+P +  Q  LP  G KN  V +  INDYG  +
Sbjct  187  TSKIEYIAPGEHKQLPLPASGGKN--VKWAAINDYGGSS  223


 Score = 16.2 bits (30),  Expect = 9.2
 Identities = 6/7 (86%), Positives = 6/7 (86%), Gaps = 0/7 (0%)

Query  223  GAETPQL  229
            GAETP L
Sbjct  50   GAETPYL  56


>P40876 Uncharacterized fimbrial chaperone YcbF [Escherichia coli 
(strain K12)]
Length=236

 Score = 110 bits (275),  Expect = 4e-33
 Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 14/221 (6%)

Query  14   LTAILLSCSSTWAAGK--GGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPD  71
            L  ++ +  S   AG+   GV +  TR ++    E IS+ + NTS +  +LI S +  P 
Sbjct  8    LALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQE-SWLINSKINRPT  66

Query  72   -------NKKSADFIITPPLFVLNPANENLLRIMYIGAP-LAKDRETLFFTSVRAVPSTT  123
                   +   A  +  PPL +L P     LR++   +  L  DRETLF  S+ +VPS  
Sbjct  67   RWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSG-  125

Query  124  KREEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDL  183
             + E  ++K+A +SV KLFWRP+GL     EA  +LR T ++  V ++NPTPY+I L  +
Sbjct  126  -KVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQV  184

Query  184  KIGGKLVKN-QMISPFDKYQFSLPKGAKNSSVTYRTINDYG  223
             + GK + N  ++ P  + Q S  +      V +R INDYG
Sbjct  185  SVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYG  225


>P53520 Chaperone protein PmfD [Proteus mirabilis (strain HI4320)]
Length=254

 Score = 103 bits (258),  Expect = 2e-30
 Identities = 75/216 (35%), Positives = 113/216 (52%), Gaps = 21/216 (10%)

Query  29   KGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKK-SADFIITPPLFVL  87
            + GV L  TR+V +  E   S+ ++NTSPD+P+L QSWV   + +K S+  +  PPL  L
Sbjct  25   QAGVSLDRTRIVLTGNENSASVNLKNTSPDIPFLAQSWVENENGQKISSPLVALPPLQRL  84

Query  88   NPANENLLRIMYIG--APLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRP  145
            + A + ++RI        L +DRE+LF+ +VR +P   K  + N L++A QS IKLF+RP
Sbjct  85   DGAQKGVVRITKTAEVGLLPQDRESLFYLNVREIPPAPK--QANVLQMAMQSRIKLFYRP  142

Query  146  KGLAYPLGEAPA-----KLRCTSSADMVTVSNPTPYFITLTDL--KIGG----KLVKNQM  194
              +   + E P      +L      +   V+NPTPY+IT+  L  K+ G    KL     
Sbjct  143  SAI---VPEKPGMVWQDQLVFKKQGNKFIVNNPTPYYITIISLSNKLNGEDSDKLTTFPG  199

Query  195  ISPFDKYQFSLPKGAKNSSVTYRT-INDYGAETPQL  229
            +    K    +P    N +  Y   +NDYG   P+L
Sbjct  200  LMVAPKASLDIPVKTSNVNQFYMMYVNDYGGH-PEL  234


>P25402 Chaperone protein FanE [Escherichia coli]
Length=228

 Score = 101 bits (252),  Expect = 8e-30
 Identities = 66/202 (33%), Positives = 108/202 (53%), Gaps = 13/202 (6%)

Query  34   LAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPD-NKKSADFIITPPLFVLNPANE  92
            L +TR +Y+EG++ +S+ + N S +  Y  Q W+   D N +   F  +P +F LNP  +
Sbjct  23   LNSTRYIYNEGQQSVSVNIHNES-EHKYGGQVWIDNIDKNGEVVFFSPSPMVFKLNPKQK  81

Query  93   NLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPL  152
             ++RI+ I   L KDRE++F+ +V+ +P   K + G +L +A  + +KL +RP  L    
Sbjct  82   QIVRIVNINDNLPKDRESIFWLNVQEIPPAPKGD-GGSLSLAINNRVKLIYRPIALKNGR  140

Query  153  GEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLV------KNQM--ISPFDKYQFS  204
             EA   ++  +S     + N TPY+  ++D+KI GK +      KN+M   SPF K    
Sbjct  141  DEAENNIKLINSGTDSCLENTTPYYFAISDVKINGKSIDLNSDAKNKMGVFSPFSK--VC  198

Query  205  LPKGAKNSSVTYRTINDYGAET  226
            L     + ++T    NDYG  T
Sbjct  199  LGNVNTSGNITVTAFNDYGVAT  220


>P33409 Chaperone protein FimB/FhaD [Bordetella pertussis (strain 
Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=244

 Score = 98.6 bits (244),  Expect = 2e-28
 Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 17/216 (8%)

Query  27   AGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSAD-----FIIT  81
            A +  + +  TR++Y+ G  + ++ + N     P L+Q+W+   + +   D     F +T
Sbjct  24   AARASLVITGTRVIYNAGSPETTVKMSNEG-QAPALMQAWIDDGNAEAKPDEVQVPFFLT  82

Query  82   PPLFVLNPANENLLRIMYIGAP----LAKDRETLFFTSVRAVPSTTKREEGN-TLKIATQ  136
            PPL  ++P     LRI + G P    L  DRE++F+ +V  VP     EEG+  L++  +
Sbjct  83   PPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIR  142

Query  137  SVIKLFWRPKGLA-YPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLVKNQ--  193
            S +KLF+RPKGL+  PL  A           ++ V NPTPY++ L  L++G         
Sbjct  143  SRLKLFYRPKGLSGNPLTAAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKT  202

Query  194  --MISPFDKYQFSLPKGAKNSSVTYRTINDYGAETP  227
              M++P    +  L KG    SV Y  I+D+G  TP
Sbjct  203  PWMLAPLSSDELRL-KGTGAKSVQYWAIDDFGGVTP  237


>P53516 Chaperone protein AfaB [Escherichia coli]
Length=247

 Score = 98.2 bits (243),  Expect = 2e-28
 Identities = 73/234 (31%), Positives = 114/234 (49%), Gaps = 32/234 (14%)

Query  3    TCITKGIVTVSLTAILLSCSSTWAAGKGGVG--------------LAATRLVYSEGEEQI  48
            T +  G+++V   A LLS  +  A G+G +               L ATR+VY+      
Sbjct  10   TGMLTGVLSV---AGLLSAGAYAAGGEGNMSASATETNARVFSLHLGATRVVYNPASSGE  66

Query  49   SLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDR  108
            +L V N   D P L+QS V++ D K  A F++TPPLF L+    + LRI+  G     DR
Sbjct  67   TLTVINDQ-DYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGGEFPPDR  125

Query  109  ETLFFTSVRAVP--STTKREEGN-----------TLKIATQSVIKLFWRPKGLAYPLGEA  155
            E+L +  V+ +P     +  EG             ++++  S IKLF RP  +     + 
Sbjct  126  ESLQWICVKGIPPKEGDRWAEGKDGEKKADKVSLNVQLSVSSCIKLFVRPPAVKGRPDDV  185

Query  156  PAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKLVK-NQMISPFDKYQFSLPKG  208
              K+    + + +   NPTP++I L+ L +GGK VK  + I+PF   ++ LP G
Sbjct  186  AGKVEWQRAGNRLKGVNPTPFYINLSTLTVGGKEVKEREYIAPFSSREYPLPAG  239



Lambda      K        H        a         alpha
   0.319    0.134    0.397    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 600230


  Database: eaed3634714359e36d87fed7b39fce08.SwissProt.fasta
    Posted date:  Jun 1, 2024  2:08 AM
  Number of letters in database: 3,766
  Number of sequences in database:  16



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40