Comparative Genomics

Z0712 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 02e1c998ad584ff124cae4ba29a45e50.TrEMBL.fasta
           12 sequences; 1,722 total letters



Query= Z0712

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A0H3PVN6 Cation efflux system protein CusF [Escherichia coli O1...  221     2e-80
A0A891SJ31 Cation efflux system protein CusF [Escherichia coli O1...  221     2e-80
C3TKD7 Cation efflux system protein [Escherichia coli]                221     2e-80
Q5G2W1 Cation efflux system protein CusF [Citrobacter sp. MY-5]       215     3e-78
A0A822PQ52 Cation efflux system protein cusF [Shigella flexneri 2a]   215     4e-78
A0A0E1T8Q2 Cation efflux system protein CusF [Escherichia coli 53...  215     4e-78
Q0T760 Cation efflux system protein CusF [Shigella flexneri serot...  215     4e-78
B7UKL5 Periplasmic copper-binding protein [Escherichia coli O127:...  215     4e-78
A0A403M8N6 Cu(+)/Ag(+) efflux RND transporter periplasmic metallo...  215     4e-78
Q9ZHD1 Copper ABC transporter substrate-binding protein [Salmonel...  87.0    1e-27
D0PRB8 Uncharacterized conserved protein [Azospirillum baldaniorum]   58.5    3e-16
Q58AF3 SilB,Silver efflux protein, MFP component of the three com...  40.4    8e-09


>A0A0H3PVN6 Cation efflux system protein CusF [Escherichia coli 
O157:H7 (strain EC869)]
Length=110

 Score = 221 bits (562),  Expect = 2e-80
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>A0A891SJ31 Cation efflux system protein CusF [Escherichia coli 
O157:H-]
Length=110

 Score = 221 bits (562),  Expect = 2e-80
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>C3TKD7 Cation efflux system protein [Escherichia coli]
Length=110

 Score = 221 bits (562),  Expect = 2e-80
 Identities = 110/110 (100%), Positives = 110/110 (100%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>Q5G2W1 Cation efflux system protein CusF [Citrobacter sp. MY-5]
Length=110

 Score = 215 bits (548),  Expect = 3e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGIDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>A0A822PQ52 Cation efflux system protein cusF [Shigella flexneri 
2a]
Length=110

 Score = 215 bits (547),  Expect = 4e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGVDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>A0A0E1T8Q2 Cation efflux system protein CusF [Escherichia coli 
53638]
Length=110

 Score = 215 bits (547),  Expect = 4e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGVDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>Q0T760 Cation efflux system protein CusF [Shigella flexneri serotype 
5b (strain 8401)]
Length=110

 Score = 215 bits (547),  Expect = 4e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGVDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>B7UKL5 Periplasmic copper-binding protein [Escherichia coli O127:H6 
(strain E2348/69 / EPEC)]
Length=110

 Score = 215 bits (547),  Expect = 4e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGVDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>A0A403M8N6 Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone 
[Shigella dysenteriae]
Length=110

 Score = 215 bits (547),  Expect = 4e-78
 Identities = 108/110 (98%), Positives = 108/110 (98%), Gaps = 0/110 (0%)

Query  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGFDLESKKITIHHDP  60
            MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKG DLESKKITIHHDP
Sbjct  1    MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVVKGVDLESKKITIHHDP  60

Query  61   IAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110
            IAAVNWPEMTMRFTITPQTKMS IKTGDKVAFNFVQQGNLSLLQDIKVSQ
Sbjct  61   IAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIKVSQ  110


>Q9ZHD1 Copper ABC transporter substrate-binding protein [Salmonella 
typhimurium]
Length=96

 Score = 87.0 bits (214),  Expect = 1e-27
 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query  36   QVISATGVVKGFDLESKKITIHHDPIAAVNWPEMTMRFT-ITPQTKMSGIKTGDKVAFNF  94
            QVI  TG+VK  D+ SKKITI H+ I AV WP MTMRFT +     ++ +KTG+ V F+F
Sbjct  20   QVIKGTGIVKDIDMNSKKITISHEAIPAVGWPAMTMRFTFVNADDAINALKTGNHVDFSF  79

Query  95   VQQGNLSLLQDIKVSQ  110
            +QQGN+SLL+ I V+Q
Sbjct  80   IQQGNISLLKSINVTQ  95


>D0PRB8 Uncharacterized conserved protein [Azospirillum baldaniorum]
Length=115

 Score = 58.5 bits (140),  Expect = 3e-16
 Identities = 29/96 (30%), Positives = 44/96 (46%), Gaps = 4/96 (4%)

Query  1   MKKALQVAMFSLFTVIGFNAQAN----EHHHETMSEAQPQVISATGVVKGFDLESKKITI  56
           M + +  AM +  T +     A     +H       AQP  +  TG V   +   + + +
Sbjct  1   MHRKIAAAMLASLTALAVLPAATWAQMDHRGHATPVAQPVAVGTTGTVNTVNPAKRLVNL  60

Query  57  HHDPIAAVNWPEMTMRFTITPQTKMSGIKTGDKVAF  92
            H PIAA+ WP M+M F + P   +  +K GD VAF
Sbjct  61  SHGPIAALGWPAMSMDFVVAPNVDLKAVKPGDPVAF  96


>Q58AF3 SilB,Silver efflux protein, MFP component of the three 
components proton antiporter metal efflux system [Cupriavidus 
metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 
/ CH34)]
Length=521

 Score = 40.4 bits (93),  Expect = 8e-09
 Identities = 17/43 (40%), Positives = 24/43 (56%), Gaps = 0/43 (0%)

Query  52   KKITIHHDPIAAVNWPEMTMRFTITPQTKMSGIKTGDKVAFNF  94
            + + I H+ I +  W  MTM F   P     G+K GD+VAF+F
Sbjct  455  RSLIIAHEAIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSF  497



Lambda      K        H        a         alpha
   0.324    0.133    0.386    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 112668


  Database: 02e1c998ad584ff124cae4ba29a45e50.TrEMBL.fasta
    Posted date:  Jun 1, 2024  9:47 AM
  Number of letters in database: 1,722
  Number of sequences in database:  12



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40