BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: a6e0a6f0e3e2edfdc26af9dcfd33e50a.SwissProt.fasta
           4 sequences; 468 total letters



Query= Z0568

Length=118
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AAQ9 Uncharacterized protein YbaA [Shigella flexneri]               239     3e-88
P0AAQ7 Uncharacterized protein YbaA [Escherichia coli O6:H1 (stra...  239     3e-88
P0AAQ8 Uncharacterized protein YbaA [Escherichia coli O157:H7]        239     3e-88
P0AAQ6 Uncharacterized protein YbaA [Escherichia coli (strain K12)]   239     3e-88


>P0AAQ9 Uncharacterized protein YbaA [Shigella flexneri]
Length=117

 Score = 239 bits (611),  Expect = 3e-88
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60
            MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA
Sbjct  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60

Query  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117
            EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
Sbjct  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117


>P0AAQ7 Uncharacterized protein YbaA [Escherichia coli O6:H1 (strain 
CFT073 / ATCC 700928 / UPEC)]
Length=117

 Score = 239 bits (611),  Expect = 3e-88
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60
            MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA
Sbjct  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60

Query  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117
            EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
Sbjct  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117


>P0AAQ8 Uncharacterized protein YbaA [Escherichia coli O157:H7]
Length=117

 Score = 239 bits (611),  Expect = 3e-88
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60
            MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA
Sbjct  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60

Query  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117
            EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
Sbjct  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117


>P0AAQ6 Uncharacterized protein YbaA [Escherichia coli (strain 
K12)]
Length=117

 Score = 239 bits (611),  Expect = 3e-88
 Identities = 117/117 (100%), Positives = 117/117 (100%), Gaps = 0/117 (0%)

Query  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60
            MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA
Sbjct  1    MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKA  60

Query  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117
            EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
Sbjct  61   EENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE  117



Lambda      K        H        a         alpha
   0.323    0.138    0.415    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 36480


  Database: a6e0a6f0e3e2edfdc26af9dcfd33e50a.SwissProt.fasta
    Posted date:  Jun 1, 2024  9:55 PM
  Number of letters in database: 468
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40