BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 4459a451c11dbf51b414104e51ef5259.SwissProt.fasta
17 sequences; 4,865 total letters
Query= Z0019
Length=302
Score E
Sequences producing significant alignments: (Bits) Value
P0A9G3 Transcriptional activator protein NhaR [Shigella flexneri] 608 0.0
P0A9G2 Transcriptional activator protein NhaR [Escherichia coli (... 608 0.0
P52692 Transcriptional activator protein NhaR [Vibrio cholerae se... 379 2e-136
Q47005 Nitrogen assimilation regulatory protein nac [Escherichia ... 67.4 3e-16
P0A4T6 HTH-type transcriptional regulator PcaQ [Agrobacterium fab... 66.2 9e-16
P0A4T7 HTH-type transcriptional regulator PcaQ [Rhizobium radioba... 66.2 9e-16
P52659 HTH-type transcriptional regulator AbaB [Streptomyces anti... 58.5 3e-13
P27111 HTH-type transcriptional regulator CynR [Escherichia coli ... 55.5 3e-12
P77746 Uncharacterized HTH-type transcriptional regulator YbdO [E... 54.3 8e-12
Q08597 Nitrogen assimilation regulatory protein nac [Klebsiella a... 53.9 1e-11
Q5PJZ0 HTH-type transcriptional regulator HdfR [Salmonella paraty... 53.1 2e-11
B4SYF7 HTH-type transcriptional regulator HdfR [Salmonella newpor... 53.1 2e-11
B4TAZ8 HTH-type transcriptional regulator HdfR [Salmonella heidel... 53.1 2e-11
B5FN59 HTH-type transcriptional regulator HdfR [Salmonella dublin... 53.1 2e-11
B5EZ22 HTH-type transcriptional regulator HdfR [Salmonella agona ... 53.1 2e-11
P77744 HTH-type transcriptional regulator AbgR [Escherichia coli ... 52.8 3e-11
P52665 HTH-type transcriptional regulator BudR [Klebsiella aeroge... 49.7 6e-11
>P0A9G3 Transcriptional activator protein NhaR [Shigella flexneri]
Length=301
Score = 608 bits (1567), Expect = 0.0
Identities = 300/301 (99%), Positives = 300/301 (99%), Gaps = 0/301 (0%)
Query 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60
MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL
Sbjct 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60
Query 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVE 120
EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVAD LSKRLVSSVLNAAVVE
Sbjct 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVE 120
Query 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180
GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP
Sbjct 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180
Query 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240
PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI
Sbjct 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240
Query 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300
FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV
Sbjct 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300
Query 301 R 301
R
Sbjct 301 R 301
>P0A9G2 Transcriptional activator protein NhaR [Escherichia coli
(strain K12)]
Length=301
Score = 608 bits (1567), Expect = 0.0
Identities = 300/301 (99%), Positives = 300/301 (99%), Gaps = 0/301 (0%)
Query 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60
MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL
Sbjct 1 MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGL 60
Query 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVE 120
EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVAD LSKRLVSSVLNAAVVE
Sbjct 61 EPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADALSKRLVSSVLNAAVVE 120
Query 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180
GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP
Sbjct 121 GEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPP 180
Query 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240
PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI
Sbjct 181 PEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMHNAI 240
Query 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300
FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV
Sbjct 241 FVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALFSPAV 300
Query 301 R 301
R
Sbjct 301 R 301
>P52692 Transcriptional activator protein NhaR [Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=296
Score = 379 bits (973), Expect = 2e-136
Identities = 183/295 (62%), Positives = 232/295 (79%), Gaps = 1/295 (0%)
Query 3 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP 62
MSH+NYNHLYYFW V K+GSV AA+AL+LTPQT+TGQI+ALE+RL GKL KR GR +EP
Sbjct 1 MSHLNYNHLYYFWMVCKQGSVTKAADALFLTPQTVTGQIKALEDRLDGKLTKRNGRSIEP 60
Query 63 SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGE 122
+ELG+LV++YAD+MF LS EMLDIVNY + SNLLFDVGVAD LSKRLVS +L +V
Sbjct 61 TELGQLVFKYADRMFGLSYEMLDIVNYSQRSNLLFDVGVADALSKRLVSKILLTSVPGDN 120
Query 123 PIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPE 182
IHLRCFESTHEMLLEQL+QHKLDMI+SDCP+DS+Q GLFS ++GE +SF+
Sbjct 121 RIHLRCFESTHEMLLEQLAQHKLDMILSDCPVDSSQSPGLFSKKLGESRMSFFSFGDVDF 180
Query 183 KPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAMH-NAIF 241
PFPA L+ ++LL+PG R+ +GRK+ WF+ QGL ILGEFDD+ALMKAF H +A+F
Sbjct 181 APFPAVLQSKKLLVPGSRTAMGRKVRQWFDRQGLQPHILGEFDDSALMKAFAIYHSDAVF 240
Query 242 VAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERMIQHPAVQRICNTDYSALF 296
+AP+ Y + A+ ++ IG V+ + EEY+ IFAERMIQHPAV+ +C+ D++ LF
Sbjct 241 MAPSFYVSEVDAESSLKLIGHVDEIKEEYYVIFAERMIQHPAVKNVCDADFTNLF 295
>Q47005 Nitrogen assimilation regulatory protein nac [Escherichia
coli (strain K12)]
Length=305
Score = 67.4 bits (163), Expect = 3e-16
Identities = 59/248 (24%), Positives = 109/248 (44%), Gaps = 18/248 (7%)
Query 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65
+N+ L YF + GS+ AAE L++ ++ Q+ LE L +L R RG+ P++
Sbjct 1 MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELNQQLLIRTKRGVTPTDA 60
Query 66 GELVYRYADKMF-TLSQEMLDIVNYRKESNLLFDVGVA-DVLSKRLVSSVLNAAVVEGEP 123
G+++Y +A + Q L + N + + +G A + + +L A E
Sbjct 61 GKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTAASSITMPLLQAVRAEFPE 120
Query 124 IHLRCFESTHEMLLEQLSQHKLDM--IISDCPI-----DSTQQEGLFSVRIGECGVSFWC 176
I + E++ +L E+L H+LDM I P+ + +E LF V +C
Sbjct 121 IVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQALLKEDLFLVGTQDC------ 174
Query 177 TNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKAFGAM 236
P + + + L +P S + ++ F+ + L +++GE + A + A A
Sbjct 175 ---PGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGEIESIATLTAAIAS 231
Query 237 HNAIFVAP 244
+ V P
Sbjct 232 GMGVAVLP 239
>P0A4T6 HTH-type transcriptional regulator PcaQ [Agrobacterium
fabrum (strain C58 / ATCC 33970)]
Length=311
Score = 66.2 bits (160), Expect = 9e-16
Identities = 42/145 (29%), Positives = 74/145 (51%), Gaps = 1/145 (1%)
Query 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65
I + HL F V ++ SV+ AAE L+++ +T IR LE+ L L +R+GRG+ S
Sbjct 6 IKFRHLQTFVEVARQKSVIRAAEILHVSQPAVTKTIRELEDVLGVSLLEREGRGIRISRY 65
Query 66 GELVYRYADKMFTLSQEMLDIVNYR-KESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPI 124
GE+ R+A T ++ +D V+ + VG +S R++ ++ + E
Sbjct 66 GEVFLRHAGATMTALRQAVDSVSQEAARAGPPVRVGALPTVSVRIMPKAMSGFLAEKTGS 125
Query 125 HLRCFESTHEMLLEQLSQHKLDMII 149
++ + +LLEQL LD+++
Sbjct 126 PVKIVTGENAVLLEQLRVGDLDLVV 150
>P0A4T7 HTH-type transcriptional regulator PcaQ [Rhizobium radiobacter]
Length=311
Score = 66.2 bits (160), Expect = 9e-16
Identities = 42/145 (29%), Positives = 74/145 (51%), Gaps = 1/145 (1%)
Query 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65
I + HL F V ++ SV+ AAE L+++ +T IR LE+ L L +R+GRG+ S
Sbjct 6 IKFRHLQTFVEVARQKSVIRAAEILHVSQPAVTKTIRELEDVLGVSLLEREGRGIRISRY 65
Query 66 GELVYRYADKMFTLSQEMLDIVNYR-KESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPI 124
GE+ R+A T ++ +D V+ + VG +S R++ ++ + E
Sbjct 66 GEVFLRHAGATMTALRQAVDSVSQEAARAGPPVRVGALPTVSVRIMPKAMSGFLAEKTGS 125
Query 125 HLRCFESTHEMLLEQLSQHKLDMII 149
++ + +LLEQL LD+++
Sbjct 126 PVKIVTGENAVLLEQLRVGDLDLVV 150
>P52659 HTH-type transcriptional regulator AbaB [Streptomyces
antibioticus]
Length=301
Score = 58.5 bits (140), Expect = 3e-13
Identities = 43/138 (31%), Positives = 70/138 (51%), Gaps = 1/138 (1%)
Query 14 FWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELG-ELVYRY 72
F V++ GS AA L L+ +T QIR LE +L LF R+ RG+ P+ +G EL +R
Sbjct 9 FVTVHRAGSFTRAAALLGLSQPAVTSQIRTLERQLGRPLFLRQARGVTPTTIGDELAHRA 68
Query 73 ADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFEST 132
A + L + ++ S L+ G + ++R++ ++ +G+ + LR T
Sbjct 69 APHLDALVEIAESGLDDDSSSRTLYLAGPPEFTTERVLPALTGLTGDDGQGLTLRVSFGT 128
Query 133 HEMLLEQLSQHKLDMIIS 150
E LE LS + D+ IS
Sbjct 129 AEETLEGLSCGRHDLAIS 146
>P27111 HTH-type transcriptional regulator CynR [Escherichia coli
(strain K12)]
Length=299
Score = 55.5 bits (132), Expect = 3e-12
Identities = 40/157 (25%), Positives = 75/157 (48%), Gaps = 7/157 (4%)
Query 10 HLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELV 69
H+ YF V + GS AA AL+++ ++ QIR LEE L LF R GR + ++ GE+
Sbjct 5 HINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLGVPLFDRSGRTIRLTDAGEVW 64
Query 70 YRYADK----MFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIH 125
+YA + + + + D+ + + S + V + + ++ I
Sbjct 65 RQYASRALQELGAGKRAIHDVADLTRGS---LRIAVTPTFTSYFIGPLMADFYARYPSIT 121
Query 126 LRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL 162
L+ E + E + + L + +LD+ I+ P+ S + E +
Sbjct 122 LQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAI 158
>P77746 Uncharacterized HTH-type transcriptional regulator YbdO
[Escherichia coli (strain K12)]
Length=300
Score = 54.3 bits (129), Expect = 8e-12
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 4/156 (3%)
Query 3 MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEP 62
+ + N L F +Y+ S+ AAE+LY+TP ++ ++ L + LF R G+G+ P
Sbjct 7 LKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQSLQRLRAQFNDPLFIRSGKGIAP 66
Query 63 SELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGE 122
+ G ++ + +K ++ ++IVN + E F + ++S +S+L + +
Sbjct 67 TTTGLNLHHHLEKNLRGLEQTINIVN-KSELKKNFIIYGPQLISCS-NNSMLIRCLRQDS 124
Query 123 PIHLRCFE--STHEMLLEQLSQHKLDMIISDCPIDS 156
+ + C + + E E L K D++I+ P+ S
Sbjct 125 SVEIECHDILMSAENAEELLVHRKADLVITQMPVIS 160
>Q08597 Nitrogen assimilation regulatory protein nac [Klebsiella
aerogenes]
Length=305
Score = 53.9 bits (128), Expect = 1e-11
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 18/236 (8%)
Query 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65
+N L YF + GS+ AAE L++ ++ Q+ LE + +L R RG+ P+E
Sbjct 1 MNLRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGEMDQQLLIRTKRGVTPTEA 60
Query 66 GELVYRYADKMF-TLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEP- 123
G+++Y +A + Q L + N + +G+A + ++ L V P
Sbjct 61 GKILYTHARTILRQCEQAQLAVNNVGQTLRGQVSIGLAPGTAASAITMPLLQTVRNELPE 120
Query 124 IHLRCFESTHEMLLEQLSQHKLDMII--SDCPI-----DSTQQEGLFSVRIGECGVSFWC 176
+ + ES+ L ++L +LDM + P+ +E L+ V +C
Sbjct 121 VMVYLQESSGTALNDKLLAGQLDMAVLYERSPVAGIVSQPLLKEDLYLVGTRDC------ 174
Query 177 TNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEILGEFDDAALMKA 232
P + + E L +P S + ++ F + L+ +I+GE + + A
Sbjct 175 ---PGQSVDLTAVAEMNLFLPRDYSAVRARVTEAFTLRRLSAKIIGEIESITTLTA 227
>Q5PJZ0 HTH-type transcriptional regulator HdfR [Salmonella paratyphi
A (strain ATCC 9150 / SARB42)]
Length=278
Score = 53.1 bits (126), Expect = 2e-11
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query 26 AAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLD 85
AAEALYLT ++ +IR LE +L LF R + + GE + YA+ + Q
Sbjct 21 AAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARK 80
Query 86 IVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFE---STHEMLLEQLSQ 142
V + N F +G + L + ++++ L EP FE + + L++QL +
Sbjct 81 EVAHTSRHN-EFSIGASASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHE 139
Query 143 HKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEK 183
+LD++I+ ++ + + S +G ++ +C++P +K
Sbjct 140 RQLDLLIT---TEAPKMDEFSSQLLGHFTLALYCSSPARKK 177
Score = 17.3 bits (33), Expect = 6.9
Identities = 6/34 (18%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 216 LNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAY 249
++ E+L F + + + FG A+++ + ++
Sbjct 1 MDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSF 34
>B4SYF7 HTH-type transcriptional regulator HdfR [Salmonella newport
(strain SL254)]
Length=278
Score = 53.1 bits (126), Expect = 2e-11
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query 26 AAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLD 85
AAEALYLT ++ +IR LE +L LF R + + GE + YA+ + Q
Sbjct 21 AAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARK 80
Query 86 IVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFE---STHEMLLEQLSQ 142
V + N F +G + L + ++++ L EP FE + + L++QL +
Sbjct 81 EVAHTSRHN-EFSIGASASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHE 139
Query 143 HKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEK 183
+LD++I+ ++ + + S +G ++ +C++P +K
Sbjct 140 RQLDLLIT---TEAPKMDEFSSQLLGHFTLALYCSSPARKK 177
Score = 17.3 bits (33), Expect = 6.9
Identities = 6/34 (18%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 216 LNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAY 249
++ E+L F + + + FG A+++ + ++
Sbjct 1 MDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSF 34
>B4TAZ8 HTH-type transcriptional regulator HdfR [Salmonella heidelberg
(strain SL476)]
Length=278
Score = 53.1 bits (126), Expect = 2e-11
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query 26 AAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLD 85
AAEALYLT ++ +IR LE +L LF R + + GE + YA+ + Q
Sbjct 21 AAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARK 80
Query 86 IVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFE---STHEMLLEQLSQ 142
V + N F +G + L + ++++ L EP FE + + L++QL +
Sbjct 81 EVAHTSRHN-EFSIGASASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHE 139
Query 143 HKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEK 183
+LD++I+ ++ + + S +G ++ +C++P +K
Sbjct 140 RQLDLLIT---TEAPKMDEFSSQLLGHFTLALYCSSPARKK 177
Score = 17.3 bits (33), Expect = 6.9
Identities = 6/34 (18%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 216 LNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAY 249
++ E+L F + + + FG A+++ + ++
Sbjct 1 MDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSF 34
>B5FN59 HTH-type transcriptional regulator HdfR [Salmonella dublin
(strain CT_02021853)]
Length=278
Score = 53.1 bits (126), Expect = 2e-11
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query 26 AAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLD 85
AAEALYLT ++ +IR LE +L LF R + + GE + YA+ + Q
Sbjct 21 AAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARK 80
Query 86 IVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFE---STHEMLLEQLSQ 142
V + N F +G + L + ++++ L EP FE + + L++QL +
Sbjct 81 EVAHTSRHN-EFSIGASASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHE 139
Query 143 HKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEK 183
+LD++I+ ++ + + S +G ++ +C++P +K
Sbjct 140 RQLDLLIT---TEAPKMDEFSSQLLGHFTLALYCSSPARKK 177
Score = 17.3 bits (33), Expect = 6.9
Identities = 6/34 (18%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 216 LNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAY 249
++ E+L F + + + FG A+++ + ++
Sbjct 1 MDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSF 34
>B5EZ22 HTH-type transcriptional regulator HdfR [Salmonella agona
(strain SL483)]
Length=278
Score = 53.1 bits (126), Expect = 2e-11
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 7/161 (4%)
Query 26 AAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLD 85
AAEALYLT ++ +IR LE +L LF R + + GE + YA+ + Q
Sbjct 21 AAEALYLTQSAVSFRIRQLENQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARK 80
Query 86 IVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHLRCFE---STHEMLLEQLSQ 142
V + N F +G + L + ++++ L EP FE + + L++QL +
Sbjct 81 EVAHTSRHN-EFSIGASASLWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHE 139
Query 143 HKLDMIISDCPIDSTQQEGLFSVRIGECGVSFWCTNPPPEK 183
+LD++I+ ++ + + S +G ++ +C++P +K
Sbjct 140 RQLDLLIT---TEAPKMDEFSSQLLGHFTLALYCSSPARKK 177
Score = 17.3 bits (33), Expect = 6.9
Identities = 6/34 (18%), Positives = 18/34 (53%), Gaps = 0/34 (0%)
Query 216 LNVEILGEFDDAALMKAFGAMHNAIFVAPTLYAY 249
++ E+L F + + + FG A+++ + ++
Sbjct 1 MDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSF 34
>P77744 HTH-type transcriptional regulator AbgR [Escherichia coli
(strain K12)]
Length=302
Score = 52.8 bits (125), Expect = 3e-11
Identities = 34/146 (23%), Positives = 74/146 (51%), Gaps = 1/146 (1%)
Query 6 INYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSEL 65
+ + + F V ++GS+ GA+ L ++ ++ I+ LEE L +LF R+ +G+ ++
Sbjct 5 VKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELEEGLAAQLFFRRSKGVTLTDA 64
Query 66 GELVYRYADKMF-TLSQEMLDIVNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPI 124
GE Y++A + L DI + + ++G+ +S+ L+ +V++ + +
Sbjct 65 GESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMGASISRSLMPAVISRFHQQHPQV 124
Query 125 HLRCFESTHEMLLEQLSQHKLDMIIS 150
+R E ++ +L Q +LD I+
Sbjct 125 KVRIMEGQLVSMINELRQGELDFTIN 150
>P52665 HTH-type transcriptional regulator BudR [Klebsiella aerogenes]
Length=143
Score = 49.7 bits (117), Expect = 6e-11
Identities = 38/140 (27%), Positives = 67/140 (48%), Gaps = 4/140 (3%)
Query 10 HLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEERLQGKLFKRKGRGLEPSELGELV 69
+L YF V +E AA+AL ++ ++ QI+ LEE + LF+R RG+E +E GE
Sbjct 5 YLRYFVAVARERHFTRAAKALGISQPPLSQQIKRLEEEVGTPLFRRLTRGVELTEAGEAF 64
Query 70 YRYADKMFTLSQEMLDI---VNYRKESNLLFDVGVADVLSKRLVSSVLNAAVVEGEPIHL 126
Y A K+ LS L+ + NL + +D + + +++ V+ + +
Sbjct 65 YEDACKILALSDAALEKARGIARGLNGNLSIGITSSDAFHPK-IFALIRQFQVQNMAVQV 123
Query 127 RCFESTHEMLLEQLSQHKLD 146
E+ L L++ +LD
Sbjct 124 HQVEANMSSLTAMLAEGELD 143
Lambda K H a alpha
0.324 0.139 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1053700
Database: 4459a451c11dbf51b414104e51ef5259.SwissProt.fasta
Posted date: May 31, 2024 10:19 PM
Number of letters in database: 4,865
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
