BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 0f7245ec1e9e1432de93357418bdb1e8.SwissProt.fasta
17 sequences; 1,209 total letters
Query= Z_L7004
Length=70
Score E
Sequences producing significant alignments: (Bits) Value
P0ACE5 Hemolysin expression-modulating protein Hha [Escherichia c... 82.0 1e-26
Q7CR17 Hemolysin expression-modulating protein Hha [Salmonella ty... 82.0 1e-26
A0A0H3N8G7 Hemolysin expression-modulating protein Hha [Salmonell... 82.0 1e-26
P0ACE3 Hemolysin expression-modulating protein Hha [Escherichia c... 82.0 1e-26
P0ACE4 Hemolysin expression-modulating protein Hha [Escherichia c... 82.0 1e-26
P0A3X0 Modulating protein YmoA [Yersinia pestis] 79.7 7e-26
P0A3X1 Modulating protein YmoA [Yersinia enterocolitica] 79.7 7e-26
Q3Z1Y0 OriC-binding nucleoid-associated protein [Shigella sonnei ... 49.7 6e-14
P64470 OriC-binding nucleoid-associated protein [Shigella flexneri] 49.7 6e-14
Q0T4F2 OriC-binding nucleoid-associated protein [Shigella flexner... 49.7 6e-14
Q32FE8 OriC-binding nucleoid-associated protein [Shigella dysente... 49.7 6e-14
P64467 OriC-binding nucleoid-associated protein [Escherichia coli... 49.7 6e-14
Q8XGJ8 Transcription modulator YdgT [Salmonella typhi] 48.1 2e-13
Q5PIC3 Transcription modulator YdgT [Salmonella paratyphi A (stra... 48.1 2e-13
Q57PH6 Transcription modulator YdgT [Salmonella choleraesuis (str... 48.1 2e-13
Q7CQK5 Transcription modulator YdgT [Salmonella typhimurium (stra... 48.1 2e-13
A0A0H3NGF1 Transcription modulator YdgT [Salmonella typhimurium (... 48.1 3e-13
>P0ACE5 Hemolysin expression-modulating protein Hha [Escherichia
coli O157:H7]
Length=72
Score = 82.0 bits (201), Expect = 1e-26
Identities = 36/66 (55%), Positives = 50/66 (76%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LRRC +++TLE++I KN+ LS +E F SAADHRLAEL KLYD+IP
Sbjct 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66
Query 64 IWKYVR 69
+WK++R
Sbjct 67 VWKFIR 72
>Q7CR17 Hemolysin expression-modulating protein Hha [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=72
Score = 82.0 bits (201), Expect = 1e-26
Identities = 36/66 (55%), Positives = 50/66 (76%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LRRC +++TLE++I KN+ LS +E F SAADHRLAEL KLYD+IP
Sbjct 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66
Query 64 IWKYVR 69
+WK++R
Sbjct 67 VWKFIR 72
>A0A0H3N8G7 Hemolysin expression-modulating protein Hha [Salmonella
typhimurium (strain SL1344)]
Length=72
Score = 82.0 bits (201), Expect = 1e-26
Identities = 36/66 (55%), Positives = 50/66 (76%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LRRC +++TLE++I KN+ LS +E F SAADHRLAEL KLYD+IP
Sbjct 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66
Query 64 IWKYVR 69
+WK++R
Sbjct 67 VWKFIR 72
>P0ACE3 Hemolysin expression-modulating protein Hha [Escherichia
coli (strain K12)]
Length=72
Score = 82.0 bits (201), Expect = 1e-26
Identities = 36/66 (55%), Positives = 50/66 (76%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LRRC +++TLE++I KN+ LS +E F SAADHRLAEL KLYD+IP
Sbjct 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66
Query 64 IWKYVR 69
+WK++R
Sbjct 67 VWKFIR 72
>P0ACE4 Hemolysin expression-modulating protein Hha [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=72
Score = 82.0 bits (201), Expect = 1e-26
Identities = 36/66 (55%), Positives = 50/66 (76%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LRRC +++TLE++I KN+ LS +E F SAADHRLAEL KLYD+IP
Sbjct 7 TKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSS 66
Query 64 IWKYVR 69
+WK++R
Sbjct 67 VWKFIR 72
>P0A3X0 Modulating protein YmoA [Yersinia pestis]
Length=67
Score = 79.7 bits (195), Expect = 7e-26
Identities = 35/66 (53%), Positives = 51/66 (77%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LR+C++++TLE++I KN+ LS E E F SAADHRLAEL KLYD+IP
Sbjct 2 TKTDYLMRLRKCTTIDTLERVIEKNKYELSDDELELFYSAADHRLAELTMNKLYDKIPPT 61
Query 64 IWKYVR 69
+W++V+
Sbjct 62 VWQHVK 67
>P0A3X1 Modulating protein YmoA [Yersinia enterocolitica]
Length=67
Score = 79.7 bits (195), Expect = 7e-26
Identities = 35/66 (53%), Positives = 51/66 (77%), Gaps = 0/66 (0%)
Query 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLSTSERESFNSAADHRLAELITGKLYDRIPKE 63
TK ++L +LR+C++++TLE++I KN+ LS E E F SAADHRLAEL KLYD+IP
Sbjct 2 TKTDYLMRLRKCTTIDTLERVIEKNKYELSDDELELFYSAADHRLAELTMNKLYDKIPPT 61
Query 64 IWKYVR 69
+W++V+
Sbjct 62 VWQHVK 67
>Q3Z1Y0 OriC-binding nucleoid-associated protein [Shigella sonnei
(strain Ss046)]
Length=71
Score = 49.7 bits (117), Expect = 6e-14
Identities = 28/70 (40%), Positives = 44/70 (63%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N E + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
Query 60 IPKEIWKYVR 69
+PK +W YV+
Sbjct 62 VPKSVWHYVQ 71
>P64470 OriC-binding nucleoid-associated protein [Shigella flexneri]
Length=71
Score = 49.7 bits (117), Expect = 6e-14
Identities = 28/70 (40%), Positives = 44/70 (63%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N E + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
Query 60 IPKEIWKYVR 69
+PK +W YV+
Sbjct 62 VPKSVWHYVQ 71
>Q0T4F2 OriC-binding nucleoid-associated protein [Shigella flexneri
serotype 5b (strain 8401)]
Length=71
Score = 49.7 bits (117), Expect = 6e-14
Identities = 28/70 (40%), Positives = 44/70 (63%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N E + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
Query 60 IPKEIWKYVR 69
+PK +W YV+
Sbjct 62 VPKSVWHYVQ 71
>Q32FE8 OriC-binding nucleoid-associated protein [Shigella dysenteriae
serotype 1 (strain Sd197)]
Length=71
Score = 49.7 bits (117), Expect = 6e-14
Identities = 28/70 (40%), Positives = 44/70 (63%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N E + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
Query 60 IPKEIWKYVR 69
+PK +W YV+
Sbjct 62 VPKSVWHYVQ 71
>P64467 OriC-binding nucleoid-associated protein [Escherichia
coli (strain K12)]
Length=71
Score = 49.7 bits (117), Expect = 6e-14
Identities = 28/70 (40%), Positives = 44/70 (63%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N E + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
Query 60 IPKEIWKYVR 69
+PK +W YV+
Sbjct 62 VPKSVWHYVQ 71
>Q8XGJ8 Transcription modulator YdgT [Salmonella typhi]
Length=71
Score = 48.1 bits (113), Expect = 2e-13
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N + + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQ 61
Query 60 IPKEIWKYVR 69
+P+ +W+YV+
Sbjct 62 VPQSVWRYVQ 71
>Q5PIC3 Transcription modulator YdgT [Salmonella paratyphi A (strain
ATCC 9150 / SARB42)]
Length=71
Score = 48.1 bits (113), Expect = 2e-13
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N + + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQ 61
Query 60 IPKEIWKYVR 69
+P+ +W+YV+
Sbjct 62 VPQSVWRYVQ 71
>Q57PH6 Transcription modulator YdgT [Salmonella choleraesuis
(strain SC-B67)]
Length=71
Score = 48.1 bits (113), Expect = 2e-13
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N + + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQ 61
Query 60 IPKEIWKYVR 69
+P+ +W+YV+
Sbjct 62 VPQSVWRYVQ 71
>Q7CQK5 Transcription modulator YdgT [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=71
Score = 48.1 bits (113), Expect = 2e-13
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N + + AADHR AEL++ G+L+D +
Sbjct 2 TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQ 61
Query 60 IPKEIWKYVR 69
+P+ +W+YV+
Sbjct 62 VPQSVWRYVQ 71
>A0A0H3NGF1 Transcription modulator YdgT [Salmonella typhimurium
(strain SL1344)]
Length=76
Score = 48.1 bits (113), Expect = 3e-13
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 4/70 (6%)
Query 4 TKQEWLYQLRRCSSVNTLEKII-HKNRDSLSTSERESFNSAADHRLAELIT-GKLYD--R 59
T Q++L + R+ SS+ +LEK+ H N + + AADHR AEL++ G+L+D +
Sbjct 7 TVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAADHRRAELVSGGRLFDVGQ 66
Query 60 IPKEIWKYVR 69
+P+ +W+YV+
Sbjct 67 VPQSVWRYVQ 76
Lambda K H a alpha
0.325 0.135 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 40080
Database: 0f7245ec1e9e1432de93357418bdb1e8.SwissProt.fasta
Posted date: May 20, 2024 12:21 PM
Number of letters in database: 1,209
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
