Comparative Genomics

ACIAD3643 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 79e3453f43d9111e588edb3c9c6acba3.TrEMBL.fasta
           14 sequences; 3,204 total letters



Query= ACIAD3643

Length=43
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A3A8EA25 TIGR04219 family outer membrane beta-barrel protein [A...  55.1    6e-15
A0A5K1MS04 Outer membrane protein [Acinetobacter baumannii NIPH 615]  50.4    3e-13
A0A1V1ALJ3 Membrane protein [Acinetobacter baumannii]                 47.8    3e-12
A0A809JFV4 TIGR04219 family outer membrane beta-barrel protein [A...  47.8    3e-12
A0A372BP86 TIGR04219 family outer membrane beta-barrel protein [A...  47.4    4e-12
A0A013TYU1 Outer membrane family protein [Acinetobacter sp. 826659]   47.4    4e-12
A0A010JEL8 Outer membrane family protein [Acinetobacter sp. 1542444]  47.4    4e-12
D0S581 Outer membrane protein [Acinetobacter calcoaceticus RUH2202]   47.4    4e-12
N9QNA4 TIGR04219 family outer membrane beta-barrel protein [Acine...  47.4    4e-12
F0KIL8 Outer membrane protein [Acinetobacter calcoaceticus (strai...  47.4    4e-12
A0A3G6YHM5 TIGR04219 family outer membrane beta-barrel protein [A...  47.4    4e-12
A0A4Q7CE72 TIGR04219 family outer membrane beta-barrel protein [A...  47.4    4e-12
A0A3G6XVI5 TIGR04219 family outer membrane beta-barrel protein [A...  47.4    4e-12
A0A3R9ZLY1 TIGR04219 family outer membrane beta-barrel protein [A...  46.6    4e-12


>A0A3A8EA25 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter guerrae]
Length=250

 Score = 55.1 bits (131),  Expect = 6e-15
 Identities = 23/41 (56%), Positives = 29/41 (71%), Gaps = 0/41 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHVLV  41
           MK+L+   C +   +S MAQADFIG+KGS DYW Y GH+ V
Sbjct  1   MKILQTTLCIMGLAISGMAQADFIGVKGSADYWFYDGHIQV  41


>A0A5K1MS04 Outer membrane protein [Acinetobacter baumannii NIPH 
615]
Length=231

 Score = 50.4 bits (119),  Expect = 3e-13
 Identities = 22/37 (59%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS  AQADFIG+KG V YW YHG
Sbjct  1   MKILKLSFLALGMGLSGFAQADFIGVKGDVGYWFYHG  37


>A0A1V1ALJ3 Membrane protein [Acinetobacter baumannii]
Length=230

 Score = 47.8 bits (112),  Expect = 3e-12
 Identities = 21/37 (57%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS  AQADFIG+KG V YW Y G
Sbjct  1   MKILKLFFLALGMGLSGFAQADFIGVKGDVGYWFYDG  37


>A0A809JFV4 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter baumannii]
Length=241

 Score = 47.8 bits (112),  Expect = 3e-12
 Identities = 21/37 (57%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS  AQADFIG+KG V YW Y G
Sbjct  12  MKILKLFFLALGMGLSGFAQADFIGVKGDVGYWFYDG  48


>A0A372BP86 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter sp. JW]
Length=230

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 20/38 (53%), Positives = 26/38 (68%), Gaps = 0/38 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGH  38
           MK+LK     +  GLS +AQADF+G+KG V YW Y G+
Sbjct  1   MKILKISLLTLGMGLSGLAQADFVGVKGDVGYWFYDGN  38


>A0A013TYU1 Outer membrane family protein [Acinetobacter sp. 826659]
Length=230

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  1   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  39


>A0A010JEL8 Outer membrane family protein [Acinetobacter sp. 1542444]
Length=230

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  1   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  39


>D0S581 Outer membrane protein [Acinetobacter calcoaceticus RUH2202]
Length=230

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 20/37 (54%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS +AQADF+G+KG V YW Y G
Sbjct  1   MKILKMSLLALGMGLSGLAQADFVGVKGEVGYWFYDG  37


>N9QNA4 TIGR04219 family outer membrane beta-barrel protein [Acinetobacter 
sp. NIPH 542]
Length=230

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/37 (57%), Positives = 25/37 (68%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS +AQADF+GIKG V YW Y G
Sbjct  1   MKILKISLLTLGMGLSGLAQADFVGIKGDVGYWFYDG  37


>F0KIL8 Outer membrane protein [Acinetobacter calcoaceticus (strain 
PHEA-2)]
Length=234

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  5   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  43


>A0A3G6YHM5 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter pittii]
Length=234

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  5   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  43


>A0A4Q7CE72 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter pittii]
Length=234

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  5   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  43


>A0A3G6XVI5 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter pittii]
Length=234

 Score = 47.4 bits (111),  Expect = 4e-12
 Identities = 21/39 (54%), Positives = 25/39 (64%), Gaps = 0/39 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHGHV  39
           MK+LK     +  GLS  AQADF+G+KG V YW Y G V
Sbjct  5   MKILKISLLTLGMGLSGFAQADFVGVKGDVGYWFYDGKV  43


>A0A3R9ZLY1 TIGR04219 family outer membrane beta-barrel protein 
[Acinetobacter baumannii]
Length=166

 Score = 46.6 bits (109),  Expect = 4e-12
 Identities = 21/37 (57%), Positives = 24/37 (65%), Gaps = 0/37 (0%)

Query  1   MKMLKYLSCCITFGLSNMAQADFIGIKGSVDYWLYHG  37
           MK+LK     +  GLS  AQADFIG+KG V YW Y G
Sbjct  2   MKILKLSFLVLGMGLSGFAQADFIGVKGDVGYWFYDG  38



Lambda      K        H        a         alpha
   0.343    0.151    0.538    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 80460


  Database: 79e3453f43d9111e588edb3c9c6acba3.TrEMBL.fasta
    Posted date:  May 9, 2024  6:27 AM
  Number of letters in database: 3,204
  Number of sequences in database:  14



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40