Comparative Genomics

ACIAD3589 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: b3a30c8d97ca969776d53d36d3ef2c5a.SwissProt.fasta
           20 sequences; 4,437 total letters



Query= ACIAD3589

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AEQ7 Glutamine transport system permease protein GlnP [Escheric...  135     5e-43
P0AEQ8 Glutamine transport system permease protein GlnP [Escheric...  135     5e-43
P0AEQ9 Glutamine transport system permease protein GlnP [Shigella...  135     5e-43
P0AEQ6 Glutamine transport system permease protein GlnP [Escheric...  135     5e-43
P42200 L-cystine transport system permease protein TcyB [Bacillus...  128     5e-40
P0AFT4 L-cystine transport system permease protein TcyL [Shigella...  125     5e-39
P0AFT3 L-cystine transport system permease protein TcyL [Escheric...  125     5e-39
P0AFT2 L-cystine transport system permease protein TcyL [Escheric...  125     5e-39
O34671 Probable glutamine ABC transporter permease protein GlnM [...  117     4e-36
P54536 Arginine transport system permease protein ArtQ [Bacillus ...  117     7e-36
Q1RHC0 Putative glutamine transport system permease protein GlnP ...  115     3e-35
Q92J96 Putative glutamine transport system permease protein GlnP ...  115     4e-35
P41083 Putative glutamine transport system permease protein GlnP ...  114     5e-35
Q4UKC4 Putative glutamine transport system permease protein GlnP ...  114     5e-35
P45023 Probable amino-acid ABC transporter permease protein HI_01...  114     8e-35
P42399 Probable amino-acid ABC transporter permease protein YckA ...  112     7e-34
P35113 Nopaline transport system permease protein NocM [Agrobacte...  110     5e-33
O34606 Probable glutamine ABC transporter permease protein GlnP [...  109     6e-33
P54953 Probable amino-acid permease protein YxeN [Bacillus subtil...  103     8e-31
O34931 L-cystine transport system permease protein TcyM [Bacillus...  103     1e-30


>P0AEQ7 Glutamine transport system permease protein GlnP [Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=219

 Score = 135 bits (340),  Expect = 5e-43
 Identities = 73/213 (34%), Positives = 130/213 (61%), Gaps = 2/213 (1%)

Query  4    QFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEM  63
            QFD+S++ P   ++ EG   T+ ++++G   GL +G++ G  R +     + +  +++E+
Sbjct  2    QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV  61

Query  64   IRNTPFLVQLFFIFFGLPAI--GVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQI  121
            IR TP +VQ+ FI+F LP     + ++ +TA+++ ++IN GAY  EI R  + +  KG  
Sbjct  62   IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR  121

Query  122  EAAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQ  181
            EA  +L ++R++ +R+V+LP +L R+ P L +Q II +  +S+   I + ELT     I 
Sbjct  122  EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII  181

Query  182  SRNFRGFEIYIVIAVLYLILAIVIRALLMRIGR  214
            + NFR  EI+  +AV YLI+ +V+  +L R+ R
Sbjct  182  AGNFRALEIWSAVAVFYLIITLVLSFILRRLER  214


>P0AEQ8 Glutamine transport system permease protein GlnP [Escherichia 
coli O157:H7]
Length=219

 Score = 135 bits (340),  Expect = 5e-43
 Identities = 73/213 (34%), Positives = 130/213 (61%), Gaps = 2/213 (1%)

Query  4    QFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEM  63
            QFD+S++ P   ++ EG   T+ ++++G   GL +G++ G  R +     + +  +++E+
Sbjct  2    QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV  61

Query  64   IRNTPFLVQLFFIFFGLPAI--GVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQI  121
            IR TP +VQ+ FI+F LP     + ++ +TA+++ ++IN GAY  EI R  + +  KG  
Sbjct  62   IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR  121

Query  122  EAAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQ  181
            EA  +L ++R++ +R+V+LP +L R+ P L +Q II +  +S+   I + ELT     I 
Sbjct  122  EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII  181

Query  182  SRNFRGFEIYIVIAVLYLILAIVIRALLMRIGR  214
            + NFR  EI+  +AV YLI+ +V+  +L R+ R
Sbjct  182  AGNFRALEIWSAVAVFYLIITLVLSFILRRLER  214


>P0AEQ9 Glutamine transport system permease protein GlnP [Shigella 
flexneri]
Length=219

 Score = 135 bits (340),  Expect = 5e-43
 Identities = 73/213 (34%), Positives = 130/213 (61%), Gaps = 2/213 (1%)

Query  4    QFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEM  63
            QFD+S++ P   ++ EG   T+ ++++G   GL +G++ G  R +     + +  +++E+
Sbjct  2    QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV  61

Query  64   IRNTPFLVQLFFIFFGLPAI--GVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQI  121
            IR TP +VQ+ FI+F LP     + ++ +TA+++ ++IN GAY  EI R  + +  KG  
Sbjct  62   IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR  121

Query  122  EAAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQ  181
            EA  +L ++R++ +R+V+LP +L R+ P L +Q II +  +S+   I + ELT     I 
Sbjct  122  EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII  181

Query  182  SRNFRGFEIYIVIAVLYLILAIVIRALLMRIGR  214
            + NFR  EI+  +AV YLI+ +V+  +L R+ R
Sbjct  182  AGNFRALEIWSAVAVFYLIITLVLSFILRRLER  214


>P0AEQ6 Glutamine transport system permease protein GlnP [Escherichia 
coli (strain K12)]
Length=219

 Score = 135 bits (340),  Expect = 5e-43
 Identities = 73/213 (34%), Positives = 130/213 (61%), Gaps = 2/213 (1%)

Query  4    QFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEM  63
            QFD+S++ P   ++ EG   T+ ++++G   GL +G++ G  R +     + +  +++E+
Sbjct  2    QFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFARTFGGWIANHVALVFIEV  61

Query  64   IRNTPFLVQLFFIFFGLPAI--GVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQI  121
            IR TP +VQ+ FI+F LP     + ++ +TA+++ ++IN GAY  EI R  + +  KG  
Sbjct  62   IRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFR  121

Query  122  EAAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQ  181
            EA  +L ++R++ +R+V+LP +L R+ P L +Q II +  +S+   I + ELT     I 
Sbjct  122  EAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIKDTSLFIVIGVAELTRQGQEII  181

Query  182  SRNFRGFEIYIVIAVLYLILAIVIRALLMRIGR  214
            + NFR  EI+  +AV YLI+ +V+  +L R+ R
Sbjct  182  AGNFRALEIWSAVAVFYLIITLVLSFILRRLER  214


>P42200 L-cystine transport system permease protein TcyB [Bacillus 
subtilis (strain 168)]
Length=234

 Score = 128 bits (321),  Expect = 5e-40
 Identities = 72/191 (38%), Positives = 116/191 (61%), Gaps = 1/191 (1%)

Query  16   MIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFF  75
            +++ G+  TI LT++  +FG+ L +I    R  +V+PL  +F +YV  IR TP LVQLF 
Sbjct  27   ILSGGIYYTIPLTILSFIFGMILALITALARMSKVRPLRWVFSVYVSAIRGTPLLVQLFI  86

Query  76   IFFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQIL  135
            IF+  PA  VT++ + ++++A  +N+GAY++EI+RA I + PKGQ EA  ++ MT  + L
Sbjct  87   IFYLFPAFNVTLDPFPSAVIAFSLNVGAYASEIIRASILSVPKGQWEAGYTIGMTHQKTL  146

Query  136  RHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNF-RGFEIYIVI  194
              V+LP +     P L +  I ++  +S+ SQI + EL   A  I +RN  +   IYI  
Sbjct  147  FRVILPQAFRVSIPPLSNTFISLIKDTSLASQILVAELFRKAQEIGARNLDQILVIYIEA  206

Query  195  AVLYLILAIVI  205
            A +Y I+  ++
Sbjct  207  AFIYWIICFLL  217


>P0AFT4 L-cystine transport system permease protein TcyL [Shigella 
flexneri]
Length=222

 Score = 125 bits (313),  Expect = 5e-39
 Identities = 65/192 (34%), Positives = 109/192 (57%), Gaps = 0/192 (0%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            + +G G T+ L++ G  FGL LG I    R   + P+  + R Y+ + R TP + QLF I
Sbjct  15   LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMI  74

Query  77   FFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQILR  136
            ++GLP  G+ ++   ++++ + +N  AY+ E +RA I +  KGQ EAAAS+ MT +Q +R
Sbjct  75   YYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMR  134

Query  137  HVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIAV  196
              +LP +     P L +  I ++  +S+ + I + EL   A  I SR    F +Y+  ++
Sbjct  135  RAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASL  194

Query  197  LYLILAIVIRAL  208
            +Y I+A V+  L
Sbjct  195  IYWIMATVLSTL  206


>P0AFT3 L-cystine transport system permease protein TcyL [Escherichia 
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=222

 Score = 125 bits (313),  Expect = 5e-39
 Identities = 65/192 (34%), Positives = 109/192 (57%), Gaps = 0/192 (0%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            + +G G T+ L++ G  FGL LG I    R   + P+  + R Y+ + R TP + QLF I
Sbjct  15   LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMI  74

Query  77   FFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQILR  136
            ++GLP  G+ ++   ++++ + +N  AY+ E +RA I +  KGQ EAAAS+ MT +Q +R
Sbjct  75   YYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMR  134

Query  137  HVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIAV  196
              +LP +     P L +  I ++  +S+ + I + EL   A  I SR    F +Y+  ++
Sbjct  135  RAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASL  194

Query  197  LYLILAIVIRAL  208
            +Y I+A V+  L
Sbjct  195  IYWIMATVLSTL  206


>P0AFT2 L-cystine transport system permease protein TcyL [Escherichia 
coli (strain K12)]
Length=222

 Score = 125 bits (313),  Expect = 5e-39
 Identities = 65/192 (34%), Positives = 109/192 (57%), Gaps = 0/192 (0%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            + +G G T+ L++ G  FGL LG I    R   + P+  + R Y+ + R TP + QLF I
Sbjct  15   LLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYISIFRGTPLIAQLFMI  74

Query  77   FFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQILR  136
            ++GLP  G+ ++   ++++ + +N  AY+ E +RA I +  KGQ EAAAS+ MT +Q +R
Sbjct  75   YYGLPQFGIELDPIPSAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTPWQTMR  134

Query  137  HVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIAV  196
              +LP +     P L +  I ++  +S+ + I + EL   A  I SR    F +Y+  ++
Sbjct  135  RAILPQAARVALPPLSNSFISLVKDTSLAATIQVPELFRQAQLITSRTLEVFTMYLAASL  194

Query  197  LYLILAIVIRAL  208
            +Y I+A V+  L
Sbjct  195  IYWIMATVLSTL  206


>O34671 Probable glutamine ABC transporter permease protein GlnM 
[Bacillus subtilis (strain 168)]
Length=216

 Score = 117 bits (293),  Expect = 4e-36
 Identities = 62/188 (33%), Positives = 103/188 (55%), Gaps = 0/188 (0%)

Query  16   MIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFF  75
            M  +G   T+L ++I       LG+     R    +PL  +   YVE IRN P L+  F 
Sbjct  12   MYMDGFYHTLLASVIALAGSFVLGVAVAVMRITVFKPLQWLGTAYVEFIRNIPLLLITFV  71

Query  76   IFFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQIL  135
             +FGLP  G+ ++ + A  +A+ I   A+  E +RAGIQ+  KGQ+EAA S   T  Q +
Sbjct  72   FYFGLPNAGLRLDGFQAGTVALTIYTSAFIAEAIRAGIQSVSKGQMEAARSSGFTYSQAM  131

Query  136  RHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIA  195
             H++LP ++  + P L +Q + ++  SS+   ++  +L + A+ + S     F++YI +A
Sbjct  132  LHIILPQAIKIVIPPLGNQFLNLVKNSSILGVVAGLDLMYQADLVSSSTLVVFDVYIFVA  191

Query  196  VLYLILAI  203
            + YL+L I
Sbjct  192  LFYLVLTI  199


>P54536 Arginine transport system permease protein ArtQ [Bacillus 
subtilis (strain 168)]
Length=219

 Score = 117 bits (292),  Expect = 7e-36
 Identities = 60/201 (30%), Positives = 115/201 (57%), Gaps = 1/201 (0%)

Query  6    DFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIR  65
            DFS+ +P    I EGL  T+ + ++  + GL LGI+   C+    +P   I   Y  + R
Sbjct  4    DFSATIPQIPFILEGLAITLKIVVVSAIIGLILGIVLSLCKISTFRPFIWIADFYTSVFR  63

Query  66   NTPFLVQLFFIFFGLPAI-GVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAA  124
             TP ++QL  ++FGLP + G  ++ + A+++A+ +N  AY +EI+RAGI A  KGQ EAA
Sbjct  64   GTPLVLQLMIVYFGLPQLLGFQIDQFWAAVVALSLNSAAYVSEIIRAGINAIDKGQKEAA  123

Query  125  ASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRN  184
             +L +   ++++ ++LP +   I PA+ +++I +   S++ + I + ++   A    +  
Sbjct  124  VALGVPYGKMMKDLLLPQAFKNISPAIVNELITLTKESAIVTVIGLGDVMRRAYQAGAAT  183

Query  185  FRGFEIYIVIAVLYLILAIVI  205
            +   E  I+  ++Y +L +++
Sbjct  184  YNYLEPLIIAGLIYYVLVLIL  204


>Q1RHC0 Putative glutamine transport system permease protein GlnP 
[Rickettsia bellii (strain RML369-C)]
Length=218

 Score = 115 bits (288),  Expect = 3e-35
 Identities = 62/190 (33%), Positives = 106/190 (56%), Gaps = 1/190 (1%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            I EG   T+  ++I  +FGL +G++   C+  + + L      Y  + R TP L+QL  I
Sbjct  15   IVEGTLITLKYSVIAVIFGLVIGVLLALCKVNKNRALRLFADFYTSIFRGTPLLIQLSII  74

Query  77   FFGLP-AIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQIL  135
            +F  P  IG+    + A  ++  +N GAY +E++RAGI A  KGQ EAA +LA+ +F I+
Sbjct  75   YFASPYLIGIKFTVFMAGAISFSLNSGAYVSEVIRAGINAVDKGQFEAAEALAIPKFLIM  134

Query  136  RHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIA  195
            + ++LP ++  I+P+L +++I ++  S++ S     +L   A  +    +  F   IV A
Sbjct  135  KDIILPQAIKNIFPSLTNELINLIKESAIISMFGEMDLMKRAQIVSLETYNYFFPMIVAA  194

Query  196  VLYLILAIVI  205
              Y IL ++I
Sbjct  195  CCYYILVMLI  204


>Q92J96 Putative glutamine transport system permease protein GlnP 
[Rickettsia conorii (strain ATCC VR-613 / Malish 7)]
Length=218

 Score = 115 bits (287),  Expect = 4e-35
 Identities = 61/195 (31%), Positives = 108/195 (55%), Gaps = 1/195 (1%)

Query  12   PYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLV  71
            P    I EG   T+  ++I  +FGL +G++   C+  + + L      Y  + R TP L+
Sbjct  10   PKIFFIVEGTLVTLKYSVIAVIFGLVIGMLLAICKVNKNRALRLFANFYTSIFRGTPLLI  69

Query  72   QLFFIFFGLP-AIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMT  130
            QL  I+F  P  IG+  + + A  +A  +N GAY +E++RAGI A  KGQ EAA +LA+ 
Sbjct  70   QLSIIYFASPYIIGIKFSVFMAGAIAFSLNSGAYVSEVIRAGINAVDKGQFEAAEALAIP  129

Query  131  RFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEI  190
            +F I + ++LP ++  I+P+L ++++ ++  S++ S +   +L   A  +    +  F  
Sbjct  130  KFLITKDIILPQAVKNIFPSLVNELVNLIKESAIISMLGEMDLMRRAQIVSIETYNYFFP  189

Query  191  YIVIAVLYLILAIVI  205
             ++ A  Y IL ++I
Sbjct  190  MLIAACCYYILVMLI  204


>P41083 Putative glutamine transport system permease protein GlnP 
[Rickettsia prowazekii (strain Madrid E)]
Length=218

 Score = 114 bits (286),  Expect = 5e-35
 Identities = 59/190 (31%), Positives = 106/190 (56%), Gaps = 1/190 (1%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            I EG   T+  ++I  + GL +G++   C+  + + L      Y  + R TP LVQL  I
Sbjct  15   IIEGTLVTLKYSVIAVILGLVIGMLLAICKVNKNRVLRLFANFYTSIFRGTPLLVQLSII  74

Query  77   FFGLP-AIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQIL  135
            +F  P  I +  N + A +++  +N GAY +E++RAGI    KGQ EAA +LA+ +F I+
Sbjct  75   YFAAPYIINIKFNVFMAGVISFALNSGAYVSEVIRAGINTVDKGQFEAAEALAIPKFLIM  134

Query  136  RHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIA  195
            + ++LP ++  I+P+L ++++ ++  S++ S +   +L   A  +    +  F   ++ A
Sbjct  135  KDIILPQAINNIFPSLVNELVNLIKESAIISMLGEMDLMRRAQIVSIETYNYFFPMLIAA  194

Query  196  VLYLILAIVI  205
              Y IL I+I
Sbjct  195  CCYYILVILI  204


>Q4UKC4 Putative glutamine transport system permease protein GlnP 
[Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)]
Length=218

 Score = 114 bits (286),  Expect = 5e-35
 Identities = 60/190 (32%), Positives = 107/190 (56%), Gaps = 1/190 (1%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            I EG   T+  ++I  +FGL +G++   C+  + + L      Y  + R TP L+QL  I
Sbjct  15   IVEGTLVTLKYSVIAVIFGLVIGMLLAICKVNKNRALRLFANFYTSIFRGTPLLIQLSII  74

Query  77   FFGLP-AIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQIL  135
            +F  P  IGV  + + A  ++  +N GAY +E++RAGI A  KGQ EAA +LA+ +F I+
Sbjct  75   YFASPYIIGVKFSVFMAGAISFSLNSGAYVSEVIRAGINAVDKGQFEAAVALAIPKFLIM  134

Query  136  RHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIA  195
            + ++LP ++  I+P+L ++++ ++  S++ S +   +L   A  +    +  F    + A
Sbjct  135  KDIILPQAVKNIFPSLVNELVNLVKESAIISMLGEMDLMRRAQIVSIETYNYFFPMFIAA  194

Query  196  VLYLILAIVI  205
              Y IL ++I
Sbjct  195  CCYYILVMLI  204


>P45023 Probable amino-acid ABC transporter permease protein HI_0179 
[Haemophilus influenzae (strain ATCC 51907 / DSM 11121 
/ KW20 / Rd)]
Length=210

 Score = 114 bits (284),  Expect = 8e-35
 Identities = 68/202 (34%), Positives = 109/202 (54%), Gaps = 5/202 (2%)

Query  16   MIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQ-----VQPLSTIFRIYVEMIRNTPFL  70
            M+   +  T+ L +I    GL + +I    R        ++ L  + R+Y+ +IR TP L
Sbjct  1    MLEAAILYTLPLAVISFFCGLLIAVIVAVIRTLPSPNLPLKLLQALCRVYISIIRGTPML  60

Query  71   VQLFFIFFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMT  130
            VQ+F IF+GLP +G+T+  +  +I+A  IN+GAY+ E VRA I A PKGQ EA+ ++ M 
Sbjct  61   VQIFIIFYGLPEVGITLEPFPTAIIAFSINIGAYAAETVRASIIAIPKGQWEASYAIGMN  120

Query  131  RFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEI  190
              Q     ++P +L    P+L +  I  +  +S+ S + + EL  VA  I + N+    I
Sbjct  121  YRQAFIRTIMPQALRISVPSLSNTFISTVKDTSLASLVLVTELFRVAQNITAANYEFILI  180

Query  191  YIVIAVLYLILAIVIRALLMRI  212
            Y   A++Y I   V+  L  R+
Sbjct  181  YSEAALIYWIFCFVLSFLQDRL  202


>P42399 Probable amino-acid ABC transporter permease protein YckA 
[Bacillus subtilis (strain 168)]
Length=226

 Score = 112 bits (279),  Expect = 7e-34
 Identities = 60/196 (31%), Positives = 108/196 (55%), Gaps = 0/196 (0%)

Query  3    YQFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVE  62
            Y F+    +     + +G+G T+L++ +    G  +G+     R  ++  L    ++Y+ 
Sbjct  9    YIFNTKLAIESFPYVIKGIGYTLLISFVSMFAGTVIGLFISLARMSKLALLRWPAKLYIS  68

Query  63   MIRNTPFLVQLFFIFFGLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIE  122
             +R  P LV LF ++FG P IG+  +A TA+++   +N  AY  EI R+ I +  KGQ E
Sbjct  69   FMRGVPILVILFILYFGFPYIGIEFSAVTAALIGFSLNSAAYIAEINRSAISSVEKGQWE  128

Query  123  AAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQS  182
            AA+SL ++ +Q +R ++LP S+    P L + ++ ++  SS+ + I++ EL   A  I  
Sbjct  129  AASSLGLSYWQTMRGIILPQSIRIALPPLANVLLDLIKASSLAAMITVPELLQHAKIIGG  188

Query  183  RNFRGFEIYIVIAVLY  198
            R F    +YI+ A++Y
Sbjct  189  REFDYMTMYILTALIY  204


>P35113 Nopaline transport system permease protein NocM [Agrobacterium 
fabrum (strain C58 / ATCC 33970)]
Length=241

 Score = 110 bits (274),  Expect = 5e-33
 Identities = 62/197 (31%), Positives = 113/197 (57%), Gaps = 10/197 (5%)

Query  24   TILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFIFFG----  79
            T+ L  I  + G  + +     R  + + +S++   YV +IR+TP LVQ+F I++G    
Sbjct  20   TLTLAFISLLIGFVVSVPVALMRLSKNRIVSSLAYGYVYIIRSTPLLVQMFLIYYGSAQF  79

Query  80   ---LPAIGVTMN---AWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQ  133
               L  +G+  +    W  +ILA+ +N  AY++EI+R GIQ+   GQIEAA ++ M+ F 
Sbjct  80   RGVLSEVGLWSSFREPWFCAILALALNTAAYTSEIIRGGIQSVSLGQIEAARAVGMSTFL  139

Query  134  ILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIV  193
              R +V P ++ +  PA  +++++++  +S+ S I++ E+T +A  I S  +   E++IV
Sbjct  140  QFRRIVFPIAIRQALPAYGNEVMLIIKSTSLASTITIVEVTGLAKQIISATYSPVEVFIV  199

Query  194  IAVLYLILAIVIRALLM  210
               +YL +  V+  L+M
Sbjct  200  AGAIYLFITFVVSRLVM  216


 Score = 17.3 bits (33),  Expect = 4.4
 Identities = 18/79 (23%), Positives = 36/79 (46%), Gaps = 8/79 (10%)

Query  141  PPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIVIAVLYLI  200
            P  L  +   L    I +++G  V   +++  L+   N I S    G+ +YI+ +     
Sbjct  11   PKLLAAVPTTLTLAFISLLIGFVVSVPVALMRLS--KNRIVSSLAYGY-VYIIRST----  63

Query  201  LAIVIRALLMRIGRACFKG  219
              ++++  L+  G A F+G
Sbjct  64   -PLLVQMFLIYYGSAQFRG  81


>O34606 Probable glutamine ABC transporter permease protein GlnP 
[Bacillus subtilis (strain 168)]
Length=218

 Score = 109 bits (272),  Expect = 6e-33
 Identities = 67/200 (34%), Positives = 110/200 (55%), Gaps = 7/200 (4%)

Query  19   EGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFIFF  78
            +G   T+ +  I  +     G+I G  R  +V  LS +  + VE IRN P L+ +FF FF
Sbjct  17   DGFLVTLYVAFISIILSFFFGLIAGTLRYAKVPVLSQLIAVLVETIRNLPLLLIIFFTFF  76

Query  79   GLPAIGVTMNAWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQILRHV  138
             LP IG+ +    A+I A+ I   A  +EI+R+G+++  KGQIEAA S  ++  Q L  +
Sbjct  77   ALPEIGIKLEITAAAITALTIFESAMLSEIIRSGLKSIDKGQIEAARSSGLSYTQTLFFI  136

Query  139  VLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRG---FEIYIVIA  195
            V+P +L R+ P + SQ I ++  +S+   I++ EL   A  I  ++  G   F I+++ A
Sbjct  137  VMPQALRRMVPPIVSQFISLLKDTSLAVVIALPELIHNAQIINGQSADGSYFFPIFLLAA  196

Query  196  VLYLI----LAIVIRALLMR  211
            ++Y      L++  R L +R
Sbjct  197  LMYFAVNYSLSLAARRLEVR  216


>P54953 Probable amino-acid permease protein YxeN [Bacillus subtilis 
(strain 168)]
Length=224

 Score = 103 bits (258),  Expect = 8e-31
 Identities = 59/205 (29%), Positives = 105/205 (51%), Gaps = 3/205 (1%)

Query  17   IAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEMIRNTPFLVQLFFI  76
            + + L  T+ + +   +F +  G+I       ++  L  + ++Y+   R  P LVQLF I
Sbjct  16   LIQALPITLFMAIAAMIFAIIGGLILALITKNKIPVLHQLSKLYISFFRGVPTLVQLFLI  75

Query  77   FFGLPAIGVTMN---AWTASILAMIINLGAYSTEIVRAGIQATPKGQIEAAASLAMTRFQ  133
            ++GLP +   M+   A TA+I+ + +   AY  EI RA + +   GQ+EA  S+ MT+FQ
Sbjct  76   YYGLPQLFPEMSKMTALTAAIIGLSLKNAAYLAEIFRAALNSVDDGQLEACLSVGMTKFQ  135

Query  134  ILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISMEELTFVANFIQSRNFRGFEIYIV  193
              R ++LP ++    PA  +  I ++  +S+   + + E+        S N + FE Y+ 
Sbjct  136  AYRRIILPQAIRNAIPATGNTFIGLLKETSLAFTLGVMEMFAQGKMYASGNLKYFETYLA  195

Query  194  IAVLYLILAIVIRALLMRIGRACFK  218
            +A++Y +L I+   L     RA  K
Sbjct  196  VAIVYWVLTIIYSILQDLFERAMSK  220


>O34931 L-cystine transport system permease protein TcyM [Bacillus 
subtilis (strain 168)]
Length=235

 Score = 103 bits (258),  Expect = 1e-30
 Identities = 59/217 (27%), Positives = 116/217 (53%), Gaps = 13/217 (6%)

Query  4    QFDFSSVLPYTGMIAEGLGRTILLTLIGTVFGLALGIIGGACRAWQVQPLSTIFRIYVEM  63
            QFDF  ++     + + +  T+++ ++  VFG  + +     R ++++ L    R YV  
Sbjct  2    QFDFPFIVSAMKEMVKTIPLTLMMAVLPIVFGFLVALGNIIVRIFRIKGLVACSRFYVSF  61

Query  64   IRNTPFLVQLFFIFFGLPAIGVTMNA-----WTAS--------ILAMIINLGAYSTEIVR  110
             R+TP ++ +  I+ G+P +   +++     W+A+        I+A+ +  GAY TEI+R
Sbjct  62   FRSTPAILHIMLIYLGIPPVADQVSSFFHLGWSANEIPVSMFVIMALSLTAGAYLTEIIR  121

Query  111  AGIQATPKGQIEAAASLAMTRFQILRHVVLPPSLGRIWPALCSQIIIVMLGSSVCSQISM  170
            +GI A   GQ+EAA S+ +T  Q  R V+LP +L    P   +  I  +  +S+ + +++
Sbjct  122  SGILAMDTGQVEAAYSIGLTYSQTFRRVILPQALKVSIPNFTNLGIGFLHTTSIAAIVAV  181

Query  171  EELTFVANFIQSRNFRGFEIYIVIAVLYLILAIVIRA  207
             E+T  A  + S N+   E +I  A++Y +L +++ +
Sbjct  182  PEITGTATIVASDNYAFLEAFIGAAIIYWVLTLILES  218



Lambda      K        H        a         alpha
   0.335    0.146    0.441    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 651057


  Database: b3a30c8d97ca969776d53d36d3ef2c5a.SwissProt.fasta
    Posted date:  May 29, 2024  10:40 PM
  Number of letters in database: 4,437
  Number of sequences in database:  20



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40