BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 49dd99a4ace3d9b7e3ac2438a37a5ff5.SwissProt.fasta
           1 sequences; 643 total letters



Query= ACIAD3568

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9CA54 Pentatricopeptide repeat-containing protein At1g74630 [Ara...  36.2    2e-06


>Q9CA54 Pentatricopeptide repeat-containing protein At1g74630 
[Arabidopsis thaliana]
Length=643

 Score = 36.2 bits (82),  Expect = 2e-06
 Identities = 26/85 (31%), Positives = 40/85 (47%), Gaps = 3/85 (4%)

Query  37   ASQGQLMTSQLVTDSLTELDPANTVSLALIANRYATN---PSVASIRILDANKQVLATSG  93
            +S G +  ++ V   L ELDP N+  L L++N YAT      VASIR     +++  T+ 
Sbjct  450  SSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTA  509

Query  94   MEKTRQGEVFVRDAMQNEKKVGTIE  118
                  G+   +     +KK   IE
Sbjct  510  WSLVEVGKTMYKFTAGEKKKGIDIE  534



Lambda      K        H        a         alpha
   0.320    0.130    0.359    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 241376


  Database: 49dd99a4ace3d9b7e3ac2438a37a5ff5.SwissProt.fasta
    Posted date:  May 29, 2024  5:17 PM
  Number of letters in database: 643
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40