Comparative Genomics

ACIAD3556 / SwissProt Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 225db40ba53bdc7d833f078ddcbed198.SwissProt.fasta
           20 sequences; 4,250 total letters



Query= ACIAD3556

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrh...  38.9    3e-07
O31560 Uncharacterized HTH-type transcriptional regulator YfiR [B...  33.9    2e-05
Q5PK70 HTH-type transcriptional repressor FabR [Salmonella paraty...  21.6    0.18 
Q57H90 HTH-type transcriptional repressor FabR [Salmonella choler...  21.6    0.18 
A9MHG9 HTH-type transcriptional repressor FabR [Salmonella arizon...  21.6    0.18 
A6TGE7 HTH-type transcriptional repressor FabR [Klebsiella pneumo...  21.6    0.18 
A8AKV8 HTH-type transcriptional repressor FabR [Citrobacter koser...  21.6    0.18 
A7ML90 HTH-type transcriptional repressor FabR [Cronobacter sakaz...  21.6    0.18 
A8A771 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.18 
B1XBX4 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.18 
C5A0R2 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.18 
Q7A964 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.18 
A7ZUI3 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.18 
P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli ...  21.6    0.19 
A1JI38 HTH-type transcriptional repressor FabR [Yersinia enteroco...  21.2    0.24 
Q66G60 HTH-type transcriptional repressor FabR [Yersinia pseudotu...  21.2    0.24 
A4TRG3 HTH-type transcriptional repressor FabR [Yersinia pestis (...  21.2    0.24 
Q1CNP3 HTH-type transcriptional repressor FabR [Yersinia pestis b...  21.2    0.24 
A9R6N6 HTH-type transcriptional repressor FabR [Yersinia pestis b...  21.2    0.24 
Q7CL09 HTH-type transcriptional repressor FabR [Yersinia pestis]      21.2    0.24 


>P39897 HTH-type transcriptional regulator MtrR [Neisseria gonorrhoeae]
Length=210

 Score = 38.9 bits (89),  Expect = 3e-07
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 0/64 (0%)

Query  36  REKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKKSEDLFQTIFLKQIEILQN  95
           +E L+ A +ET+  +G    ++ ++   A +T    Y  FK  EDLF  +F +  + ++N
Sbjct  12  KEHLMLAALETFYRKGIARTSLNEIAQAAGVTRGALYWHFKNKEDLFDALFQRICDDIEN  71

Query  96  NVMQ  99
            + Q
Sbjct  72  CIAQ  75


>O31560 Uncharacterized HTH-type transcriptional regulator YfiR 
[Bacillus subtilis (strain 168)]
Length=205

 Score = 33.9 bits (76),  Expect = 2e-05
 Identities = 17/56 (30%), Positives = 30/56 (54%), Gaps = 0/56 (0%)

Query  30  ERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKKSEDLFQTI  85
           E K  R+ +++EA    +  +GF   T+KDV  E+  +    Y  F  +E++F+ I
Sbjct  8   EHKDKRQAEILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRI  63


>Q5PK70 HTH-type transcriptional repressor FabR [Salmonella paratyphi 
A (strain ATCC 9150 / SARB42)]
Length=210

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>Q57H90 HTH-type transcriptional repressor FabR [Salmonella choleraesuis 
(strain SC-B67)]
Length=210

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A9MHG9 HTH-type transcriptional repressor FabR [Salmonella arizonae 
(strain ATCC BAA-731 / CDC346-86 / RSK2980)]
Length=210

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A6TGE7 HTH-type transcriptional repressor FabR [Klebsiella pneumoniae 
subsp. pneumoniae (strain ATCC 700721 / MGH 78578)]
Length=210

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A8AKV8 HTH-type transcriptional repressor FabR [Citrobacter koseri 
(strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)]
Length=210

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A7ML90 HTH-type transcriptional repressor FabR [Cronobacter sakazakii 
(strain ATCC BAA-894)]
Length=211

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A8A771 HTH-type transcriptional repressor FabR [Escherichia coli 
O9:H4 (strain HS)]
Length=215

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>B1XBX4 HTH-type transcriptional repressor FabR [Escherichia coli 
(strain K12 / DH10B)]
Length=215

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>C5A0R2 HTH-type transcriptional repressor FabR [Escherichia coli 
(strain K12 / MC4100 / BW2952)]
Length=215

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAVIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>Q7A964 HTH-type transcriptional repressor FabR [Escherichia coli 
O157:H7]
Length=215

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A7ZUI3 HTH-type transcriptional repressor FabR [Escherichia coli 
O139:H28 (strain E24377A / ETEC)]
Length=215

 Score = 21.6 bits (44),  Expect = 0.18
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>P0ACU5 HTH-type transcriptional repressor FabR [Escherichia coli 
(strain K12)]
Length=234

 Score = 21.6 bits (44),  Expect = 0.19
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  43   SAERSFASLSL-----------------------------REVAREAGIAPTSFYRHFRD  73

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  74   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  128


>A1JI38 HTH-type transcriptional repressor FabR [Yersinia enterocolitica 
serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)]
Length=210

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>Q66G60 HTH-type transcriptional repressor FabR [Yersinia pseudotuberculosis 
serotype I (strain IP32953)]
Length=211

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A4TRG3 HTH-type transcriptional repressor FabR [Yersinia pestis 
(strain Pestoides F)]
Length=211

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>Q1CNP3 HTH-type transcriptional repressor FabR [Yersinia pestis 
bv. Antiqua (strain Nepal516)]
Length=211

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>A9R6N6 HTH-type transcriptional repressor FabR [Yersinia pestis 
bv. Antiqua (strain Angola)]
Length=211

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109


>Q7CL09 HTH-type transcriptional repressor FabR [Yersinia pestis]
Length=211

 Score = 21.2 bits (43),  Expect = 0.24
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 30/116 (26%)

Query  18   SNERQFKGLSLSERKYARREKLIEAGIETYGTQGFFSVTVKDVCNEAKLTERYFYESFKK  77
            S ER F  LSL                             ++V  EA +    FY  F+ 
Sbjct  24   SAERSFASLSL-----------------------------REVSREAGIAPTSFYRHFRD  54

Query  78   SEDLFQTIFLKQIEILQNNVMQAVMQHTPSPEKMIKAGLTALLHTLKDDPRLARII  133
             ++L  T+ + +  ++   +M+   Q       +I+  ++  +  + ++P   R++
Sbjct  55   VDELGLTM-VDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGNNPNAFRLL  109



Lambda      K        H        a         alpha
   0.322    0.134    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 641080


  Database: 225db40ba53bdc7d833f078ddcbed198.SwissProt.fasta
    Posted date:  May 30, 2024  12:54 PM
  Number of letters in database: 4,250
  Number of sequences in database:  20



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40