BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c1acad56b2771d237a4e96dd333c2d8f.SwissProt.fasta
15 sequences; 5,212 total letters
Query= ACIAD3526
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
O26314 DNA uridine endonuclease [Methanothermobacter thermautotro... 198 4e-66
P37454 Exodeoxyribonuclease [Bacillus subtilis (strain 168)] 155 2e-49
A0MTA1 DNA-(apurinic or apyrimidinic site) endonuclease [Danio re... 139 2e-42
P51173 DNA-(apurinic or apyrimidinic site) endonuclease [Dictyost... 139 5e-42
A2T7I6 DNA-(apurinic or apyrimidinic site) endonuclease [Pongo py... 136 2e-41
P43138 DNA-(apurinic or apyrimidinic site) endonuclease [Rattus n... 135 3e-41
P28352 DNA-(apurinic or apyrimidinic site) endonuclease [Mus musc... 135 3e-41
P23196 DNA-(apurinic or apyrimidinic site) endonuclease [Bos taurus] 134 8e-41
A2T6Y4 DNA-(apurinic or apyrimidinic site) endonuclease [Pan trog... 134 2e-40
A1YFZ3 DNA-(apurinic or apyrimidinic site) endonuclease [Pan pani... 134 2e-40
P27695 DNA-(apurinic or apyrimidinic site) endonuclease [Homo sap... 134 2e-40
P27864 Recombination repair protein 1 [Drosophila melanogaster] 137 9e-40
A1YES6 DNA-(apurinic or apyrimidinic site) endonuclease [Gorilla ... 129 6e-39
P45951 DNA-(apurinic or apyrimidinic site) endonuclease, chloropl... 127 1e-36
P0A2X4 Exodeoxyribonuclease [Streptococcus pneumoniae (strain ATC... 110 5e-32
>O26314 DNA uridine endonuclease [Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC
100330 / Delta H)]
Length=257
Score = 198 bits (503), Expect = 4e-66
Identities = 96/261 (37%), Positives = 157/261 (60%), Gaps = 7/261 (3%)
Query 25 ILRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKP-EGWYTHLFP 83
+L+++S NVNGLR+ KG L+W + + D++C+QE + Q K + EG+ + P
Sbjct 3 VLKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTP 62
Query 84 AERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGSS 143
AER GY+G A+Y+++P S+++G G E D++GR A+FD L + ++Y P+G
Sbjct 63 AERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFL-----LYNIYFPNGKM 117
Query 144 GDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPHE 203
+E K F + + + + + RD +++I+CGD+N H+ ID+ N SG LP E
Sbjct 118 SEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVE 177
Query 204 RAWLDHIYDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGWRIDYHACSPDWKTRTVN 263
RAW+D + E GYVDTFR + Y+WWS R +AR +NVGWR+DY + ++K +
Sbjct 178 RAWIDK-FIENGYVDTFRMFNSDPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKR 236
Query 264 AWVYRDEWYSDHAPVIIDYKI 284
+W+ D SDH P+ ++ ++
Sbjct 237 SWILSDVMGSDHCPIGLEIEL 257
>P37454 Exodeoxyribonuclease [Bacillus subtilis (strain 168)]
Length=252
Score = 155 bits (392), Expect = 2e-49
Identities = 91/255 (36%), Positives = 143/255 (56%), Gaps = 11/255 (4%)
Query 26 LRVVSINVNGLRSSVTK-GLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLFPA 84
++++S NVNGLR+ + K L +L++ +AD+IC+QE++I Q +PE ++ + A
Sbjct 1 MKLISWNVNGLRAVMRKMDFLSYLKEEDADIICLQETKIQDGQVD--LQPEDYHVYWNYA 58
Query 85 ERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGSSG 144
+ GY+GTA++S+ V G+G E D +GR I EF+ ++ ++Y P+ G
Sbjct 59 VKKGYSGTAVFSKQEPLQVIYGIGVEEHDQEGRVITLEFE-----NVFVMTVYTPNSRRG 113
Query 145 DEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPHER 204
E + + E + + D+ K +I+CGD N+ H+ ID+KN N+ ++G ER
Sbjct 114 LERIDYRMQWEEALLSYILEL-DQKKPVILCGDLNVAHQEIDLKNPKANRNNAGFSDQER 172
Query 205 AWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRTVN 263
E G+VD+FR V P+ E YSWWS R AR +N+GWRIDY S K + +
Sbjct 173 EAFTRFL-EAGFVDSFRHVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIED 231
Query 264 AWVYRDEWYSDHAPV 278
A + D SDH PV
Sbjct 232 ASISADVMGSDHCPV 246
>A0MTA1 DNA-(apurinic or apyrimidinic site) endonuclease [Danio
rerio]
Length=310
Score = 139 bits (349), Expect = 2e-42
Identities = 90/276 (33%), Positives = 143/276 (52%), Gaps = 20/276 (7%)
Query 12 RMIPKDSYPSDVKILRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDK 71
++ KD +++KI S NV+GLR+ V K L+W+ K + D++C+QE++
Sbjct 44 KLTSKDGRAANMKI---TSWNVDGLRAWVKKNGLDWVRKEDPDILCLQETKCAEKALPAD 100
Query 72 FKPEGWYTHLFPA---ERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLN 128
Y H + A ++ GY+G A+ + +V G+G E D +GR I AEF
Sbjct 101 ITGMPEYPHKYWAGSEDKEGYSGVAMLCKTEPLNVTYGIGKEEHDKEGRVITAEFP---- 156
Query 129 QPAYICSLYLPSGSSG-DEAQARK--DVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRI 185
++ + Y+P+ S G RK DV Y L D K +++CGD N+ H+ I
Sbjct 157 -DFFLVTAYVPNASRGLVRLDYRKTWDVDFRAYLCGL----DARKPLVLCGDLNVAHQEI 211
Query 186 DIKNWSGNQKSSGCLPHERAWLDHIYDELGYVDTFREVRP-EAELYSWWSNRGQARAKNV 244
D+KN GN+K++G P ER + E G+ D+FRE+ P +A Y++W+ AR+KNV
Sbjct 212 DLKNPKGNRKNAGFTPEEREGFTQLL-EAGFTDSFRELYPDQAYAYTFWTYMMNARSKNV 270
Query 245 GWRIDYHACSPDWKTRTVNAWVYRDEWYSDHAPVII 280
GWR+DY S ++ + SDH P+ +
Sbjct 271 GWRLDYFVLSSALLPGLCDSKIRNTAMGSDHCPITL 306
>P51173 DNA-(apurinic or apyrimidinic site) endonuclease [Dictyostelium
discoideum]
Length=361
Score = 139 bits (349), Expect = 5e-42
Identities = 79/233 (34%), Positives = 129/233 (55%), Gaps = 12/233 (5%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLFPAE 85
++++S NV G +S ++KG E++EK DV+C+QE++I + P+G+ H A+
Sbjct 105 MKIISWNVAGFKSVLSKGFTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYEYHFIEAD 164
Query 86 RAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGSSGD 145
+ G+ GT + ++ ++ G+G D++GR I E+D YI + Y+P ++G
Sbjct 165 QKGHHGTGVLTKKKPNAITFGIGIAKHDNEGRVITLEYD-----QFYIVNTYIP--NAGT 217
Query 146 EAQARKDVFLEKY---AQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
R D ++++ Q + + K II CGD N+ H ID+KN N+KS+G
Sbjct 218 RGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNVAHTEIDLKNPKTNKKSAGFTIE 277
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACS 254
ER + + E GYVD++R P E Y++WS G R+KNVGWR+DY S
Sbjct 278 ERTSFSN-FLEKGYVDSYRHFNPGKEGSYTFWSYLGGGRSKNVGWRLDYFVVS 329
>A2T7I6 DNA-(apurinic or apyrimidinic site) endonuclease [Pongo
pygmaeus]
Length=318
Score = 136 bits (342), Expect = 2e-41
Identities = 77/259 (30%), Positives = 137/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + +H +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEFD + + + Y+P+
Sbjct 122 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRRFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P Y++W+ AR+KNVGWR+DY S T
Sbjct 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLTAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>P43138 DNA-(apurinic or apyrimidinic site) endonuclease [Rattus
norvegicus]
Length=317
Score = 135 bits (341), Expect = 3e-41
Identities = 77/259 (30%), Positives = 137/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + TH +
Sbjct 61 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSA 120
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEF+ + + + Y+P+
Sbjct 121 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFI-----LVTAYVPNAG 175
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 176 RGLVRLEYRQRWDEAFRKFLKDLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 234
Query 203 ERAWLDHIYDELGYVDTFREVRPE-AELYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P A Y++W+ AR+KNVGWR+DY S
Sbjct 235 ERQGFGEMLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 294
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 295 CDSKIRSKALGSDHCPITL 313
>P28352 DNA-(apurinic or apyrimidinic site) endonuclease [Mus
musculus]
Length=317
Score = 135 bits (341), Expect = 3e-41
Identities = 77/259 (30%), Positives = 137/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + TH +
Sbjct 61 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLTHQYWSA 120
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEF+ + + + Y+P+
Sbjct 121 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFESFV-----LVTAYVPNAG 175
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 176 RGLVRLEYRQRWDEAFRKFLKDLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 234
Query 203 ERAWLDHIYDELGYVDTFREVRPE-AELYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P A Y++W+ AR+KNVGWR+DY S
Sbjct 235 ERQGFGELLQAVPLADSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 294
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 295 CDSKIRSKALGSDHCPITL 313
>P23196 DNA-(apurinic or apyrimidinic site) endonuclease [Bos
taurus]
Length=318
Score = 134 bits (338), Expect = 8e-41
Identities = 76/259 (29%), Positives = 137/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + +H +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPVELQELSGLSHQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AE+D + + + Y+P+
Sbjct 122 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEYDAFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPE-AELYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P A Y++W+ AR+KNVGWR+DY S
Sbjct 236 ERQGFGELLQAVPLTDSFRHLYPNTAYAYTFWTYMMNARSKNVGWRLDYFLLSQSVLPAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>A2T6Y4 DNA-(apurinic or apyrimidinic site) endonuclease [Pan
troglodytes]
Length=318
Score = 134 bits (336), Expect = 2e-40
Identities = 76/259 (29%), Positives = 136/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + +H +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEFD + + + Y+P+
Sbjct 122 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P Y++W+ AR+KNVGWR+DY S
Sbjct 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>A1YFZ3 DNA-(apurinic or apyrimidinic site) endonuclease [Pan
paniscus]
Length=318
Score = 134 bits (336), Expect = 2e-40
Identities = 76/259 (29%), Positives = 136/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + +H +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEFD + + + Y+P+
Sbjct 122 PSDKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P Y++W+ AR+KNVGWR+DY S
Sbjct 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>P27695 DNA-(apurinic or apyrimidinic site) endonuclease [Homo
sapiens]
Length=318
Score = 134 bits (336), Expect = 2e-40
Identities = 76/259 (29%), Positives = 136/259 (53%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + +H +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P+++ GY+G + SR V G+G E D +GR I AEFD + + + Y+P+
Sbjct 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRKFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P Y++W+ AR+KNVGWR+DY S
Sbjct 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>P27864 Recombination repair protein 1 [Drosophila melanogaster]
Length=679
Score = 137 bits (344), Expect = 9e-40
Identities = 89/275 (32%), Positives = 145/275 (53%), Gaps = 11/275 (4%)
Query 14 IPKDSY--PSDVKI-LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTD 70
+ KD++ P+D + L++ S NV GLR+ + K L+ ++ E D+ C+QE++ + Q +
Sbjct 412 LDKDAFALPADKEFNLKICSWNVAGLRAWLKKDGLQLIDLEEPDIFCLQETKCANDQLPE 471
Query 71 KFKPEGWYTHLFPAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQP 130
+ Y + GYAG AIYS+I V+ G+G E D GR I AE+ +
Sbjct 472 EVTRLPGYHPYWLCMPGGYAGVAIYSKIMPIHVEYGIGNEEFDDVGRMITAEY-----EK 526
Query 131 AYICSLYLPSGSSGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNW 190
Y+ ++Y+P+ S + EK Q + D K +++CGD N+ H ID++N
Sbjct 527 FYLINVYVPN-SGRKLVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMNVSHMPIDLENP 585
Query 191 SGNQKSSGCLPHERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRID 249
N K++G ER + + LG+VDTFR + P+ + Y++W+ ARA+NVGWR+D
Sbjct 586 KNNTKNAGFTQEERDKMTELLG-LGFVDTFRHLYPDRKGAYTFWTYMANARARNVGWRLD 644
Query 250 YHACSPDWKTRTVNAWVYRDEWYSDHAPVIIDYKI 284
Y S + + V + SDH P+ I + I
Sbjct 645 YCLVSERFVPKVVEHEIRSQCLGSDHCPITIFFNI 679
>A1YES6 DNA-(apurinic or apyrimidinic site) endonuclease [Gorilla
gorilla gorilla]
Length=318
Score = 129 bits (325), Expect = 6e-39
Identities = 75/259 (29%), Positives = 134/259 (52%), Gaps = 10/259 (4%)
Query 26 LRVVSINVNGLRSSVTKGLLEWLEKSEADVICMQESRITHAQWTDKFKPEGWYTHLF--- 82
L++ S NV+GLR+ + K L+W+++ D++C+QE++ + + + + ++ +
Sbjct 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSYQYWSA 121
Query 83 PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPAYICSLYLPSGS 142
P + GY+G + SR V G+G E D +GR I AEFD + + + Y+P+
Sbjct 122 PXXKEGYSGVGLLSRQCPLKVSYGIGEEEHDQEGRVIVAEFDSFV-----LVTAYVPNAG 176
Query 143 SGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHKRIDIKNWSGNQKSSGCLPH 202
G + + E + + LK K +++CGD N+ H+ ID++N GN+K++G P
Sbjct 177 RGLVRLEYRQRWDEAFRRFLKGLASR-KPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235
Query 203 ERAWLDHIYDELGYVDTFREVRPEAE-LYSWWSNRGQARAKNVGWRIDYHACSPDWKTRT 261
ER + + D+FR + P Y++W+ AR+KNVGWR+DY S
Sbjct 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 295
Query 262 VNAWVYRDEWYSDHAPVII 280
++ + SDH P+ +
Sbjct 296 CDSKIRSKALGSDHCPITL 314
>P45951 DNA-(apurinic or apyrimidinic site) endonuclease, chloroplastic
[Arabidopsis thaliana]
Length=536
Score = 127 bits (319), Expect = 1e-36
Identities = 86/276 (31%), Positives = 140/276 (51%), Gaps = 20/276 (7%)
Query 20 PSDVKILRVVSINVNGLRSSV---TKGLLEWLEKSEADVICMQESR--ITHAQWTDKFKP 74
P K ++V++ NVNGLR + + L+ ++ D++C+QE++ + + K
Sbjct 270 PEGTKCVKVMTWNVNGLRGLLKFESFSALQLAQRENFDILCLQETKLQVKDVEEIKKTLI 329
Query 75 EGWYTHLF---PAERAGYAGTAIYSRIPFKSVQDGLGFELADSQGRFIAAEFDLGLNQPA 131
+G Y H F + GY+GTAI SRI SV+ G G D++GR + AEFD
Sbjct 330 DG-YDHSFWSCSVSKLGYSGTAIISRIKPLSVRYGTGLSGHDTEGRIVTAEFD-----SF 383
Query 132 YICSLYLPSGSSGDEAQARKDVFLEKYAQILKQWRDE---NKSIIVCGDYNIVHKRIDIK 188
Y+ + Y+P+ G + R +E++ + L E +K +++ GD N H+ IDI
Sbjct 384 YLINTYVPNSGDGLK---RLSYRIEEWDRTLSNHIKELEKSKPVVLTGDLNCAHEEIDIF 440
Query 189 NWSGNQKSSGCLPHERAWLDHIYDELGYVDTFREVRPEAELYSWWSNRGQARAKNVGWRI 248
N +GN++S+G ER + G+VDTFR+ P Y++W R R N GWR+
Sbjct 441 NPAGNKRSAGFTIEERQSFGANLLDKGFVDTFRKQHPGVVGYTYWGYRHGGRKTNKGWRL 500
Query 249 DYHACSPDWKTRTVNAWVYRDEWYSDHAPVIIDYKI 284
DY S ++++ D SDH P+ + K+
Sbjct 501 DYFLVSQSIAANVHDSYILPDINGSDHCPIGLILKL 536
>P0A2X4 Exodeoxyribonuclease [Streptococcus pneumoniae (strain
ATCC BAA-255 / R6)]
Length=275
Score = 110 bits (275), Expect = 5e-32
Identities = 78/280 (28%), Positives = 136/280 (49%), Gaps = 32/280 (11%)
Query 26 LRVVSINVNGLRSSVTKG---------LLEWLEKSEADVICMQESRIT-------HAQWT 69
++++S N++ L +++T +L+ L AD+I +QE++++ H +
Sbjct 1 MKLISWNIDSLNAALTSDSARAKLSQEVLQTLVAENADIIAIQETKLSAKGPTKKHVEIL 60
Query 70 DKFKP---EGWYTHLFPAERAGYAGTA-IYSR--IPFKSVQDGLGFELADSQGRFIAAEF 123
++ P W + PA R GYAGT +Y + P S + D +GR I EF
Sbjct 61 EELFPGYENTWRSSQEPA-RKGYAGTMFLYKKELTPTISFPEIGAPSTMDLEGRIITLEF 119
Query 124 DLGLNQPAYICSLYLPSGSSGDEAQARKDVFLEKYAQILKQWRDENKSIIVCGDYNIVHK 183
D ++ +Y P+ G + + V+ KYA+ L + D+ K ++ GDYN+ H
Sbjct 120 DA-----FFVTQVYTPNAGDGLKRLEERQVWDAKYAEYLAEL-DKEKPVLATGDYNVAHN 173
Query 184 RIDIKNWSGNQKSSGCLPHERAWLDHIYDELGYVDTFREVRPEA-ELYSWWSNRGQ-ARA 241
ID+ N + N++S G ERA ++ G+ DTFR V + E Y+WW+ R + ++
Sbjct 174 EIDLANPASNRRSPGFTDEERAGFTNLL-ATGFTDTFRHVHGDVPERYTWWAQRSKTSKI 232
Query 242 KNVGWRIDYHACSPDWKTRTVNAWVYRDEWYSDHAPVIID 281
N GWRIDY S + + + DH P++++
Sbjct 233 NNTGWRIDYWLTSNRIADKVTKSDMIDSGARQDHTPIVLE 272
Lambda K H a alpha
0.321 0.137 0.444 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1085280
Database: c1acad56b2771d237a4e96dd333c2d8f.SwissProt.fasta
Posted date: May 9, 2024 2:25 AM
Number of letters in database: 5,212
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
