BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 51f0bd543afb0b7aa99424790ab27698.SwissProt.fasta
23 sequences; 12,250 total letters
Query= ACIAD3508
Length=242
Score E
Sequences producing significant alignments: (Bits) Value
P0AFT1 Murein DD-endopeptidase MepM [Shigella flexneri] 102 3e-28
P0AFT0 Murein DD-endopeptidase MepM [Escherichia coli O6:H1 (stra... 102 3e-28
P0AFS9 Murein DD-endopeptidase MepM [Escherichia coli (strain K12)] 102 3e-28
P44693 Uncharacterized metalloprotease HI_0409 [Haemophilus influ... 99.0 8e-27
Q8K9M4 Uncharacterized metalloprotease BUsg_310 [Buchnera aphidic... 94.4 2e-25
Q89AI9 Uncharacterized metalloprotease bbp_296 [Buchnera aphidico... 92.8 6e-25
Q46798 Uncharacterized lipoprotein YgeR [Escherichia coli (strain... 73.9 1e-18
O31976 SPbeta prophage-derived uncharacterized transglycosylase Y... 75.9 1e-18
O64046 Probable tape measure protein [Bacillus phage SPbeta] 75.9 1e-18
Q5HJ99 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 74.3 1e-18
Q6GK35 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 74.3 1e-18
Q7A7T0 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 74.3 1e-18
A0A0H3K6J4 Glycyl-glycine endopeptidase LytM [Staphylococcus aure... 74.3 1e-18
O33599 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 74.3 1e-18
Q8NYG1 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 73.2 4e-18
Q6GCJ6 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus (... 73.2 4e-18
A0A0H3C9Q9 Cell division protein DipM [Caulobacter vibrioides (st... 72.4 1e-17
P47764 Lipoprotein NlpD [Yersinia enterocolitica] 65.5 6e-17
P37690 Murein hydrolase activator EnvC [Escherichia coli (strain ... 70.1 7e-17
P0ADA3 Murein hydrolase activator NlpD [Escherichia coli (strain ... 68.9 2e-16
Q56131 Murein hydrolase activator NlpD [Salmonella typhi] 68.6 2e-16
P40827 Murein hydrolase activator NlpD [Salmonella typhimurium (s... 68.6 2e-16
P39700 Murein hydrolase activator NlpD [Salmonella dublin] 68.6 2e-16
>P0AFT1 Murein DD-endopeptidase MepM [Shigella flexneri]
Length=440
Score = 102 bits (255), Expect = 3e-28
Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 3/120 (3%)
Query 117 PLPDMVRVSSEFG---TRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQY 173
P R+SS F T + G PH G+D + P GTP+ + G G V A G Y
Sbjct 288 PTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYY 347
Query 174 VEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNP 233
V I HG Y TRY H +I+V+ G +V G+RIA G TGR TGPHLH+EV + Q NP
Sbjct 348 VAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNP 407
>P0AFT0 Murein DD-endopeptidase MepM [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=440
Score = 102 bits (255), Expect = 3e-28
Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 3/120 (3%)
Query 117 PLPDMVRVSSEFG---TRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQY 173
P R+SS F T + G PH G+D + P GTP+ + G G V A G Y
Sbjct 288 PTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYY 347
Query 174 VEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNP 233
V I HG Y TRY H +I+V+ G +V G+RIA G TGR TGPHLH+EV + Q NP
Sbjct 348 VAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNP 407
>P0AFS9 Murein DD-endopeptidase MepM [Escherichia coli (strain
K12)]
Length=440
Score = 102 bits (255), Expect = 3e-28
Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 3/120 (3%)
Query 117 PLPDMVRVSSEFG---TRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQY 173
P R+SS F T + G PH G+D + P GTP+ + G G V A G Y
Sbjct 288 PTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYY 347
Query 174 VEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNP 233
V I HG Y TRY H +I+V+ G +V G+RIA G TGR TGPHLH+EV + Q NP
Sbjct 348 VAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNP 407
>P44693 Uncharacterized metalloprotease HI_0409 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=475
Score = 99.0 bits (245), Expect = 8e-27
Identities = 55/141 (39%), Positives = 72/141 (51%), Gaps = 4/141 (3%)
Query 97 SSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRT---LLGTTRPHEGIDLSAPSGTPI 153
++ RY + +PL RVSS F + G RPH+G+D S GTP+
Sbjct 302 ANGRYYNQQGETLGKGFARYPLQRQARVSSPFNPNRRHPVTGRIRPHKGVDFSVSQGTPV 361
Query 154 YASGPGIVTKAGWGTG-YGQYVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCT 212
A G V K + G G+YV + HG Y T Y H S+ +V+ G V GERIA G T
Sbjct 362 IAPADGTVEKVAYQAGGAGRYVMLRHGREYQTVYMHLSKSLVKAGQTVKKGERIALSGNT 421
Query 213 GRCTGPHLHFEVVKDGQRKNP 233
G TGPHLH+E +G+ NP
Sbjct 422 GISTGPHLHYEFHINGRAVNP 442
>Q8K9M4 Uncharacterized metalloprotease BUsg_310 [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=415
Score = 94.4 bits (233), Expect = 2e-25
Identities = 55/157 (35%), Positives = 86/157 (55%), Gaps = 8/157 (5%)
Query 83 IELNNQTLEKKY---PGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRP 139
++L+N L++KY + ++ S+ + L+ R+SS F R + T
Sbjct 230 VKLDN--LDRKYFSIRAFNGKFYDSDGFNKSEELINFSFLKKYRISSPFNLRRVNPVTHR 287
Query 140 ---HEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQYVEINHGNGYLTRYAHASRIMVQV 196
H GIDL+ P GTP+ A+ G + KA + G Y+ + + N Y TRY H +I+V+V
Sbjct 288 ISRHLGIDLAMPQGTPVIATSSGKIIKAQFNKIAGFYISLKNKNYYTTRYMHLKKILVKV 347
Query 197 GDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNP 233
G ++ GE+IA G TGR TGPHLH+E+ + + NP
Sbjct 348 GQKIKKGEKIALSGNTGRTTGPHLHYEIWINHRAINP 384
>Q89AI9 Uncharacterized metalloprotease bbp_296 [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=376
Score = 92.8 bits (229), Expect = 6e-25
Identities = 44/111 (40%), Positives = 64/111 (58%), Gaps = 3/111 (3%)
Query 117 PLPDMVRVSSEFGTRTLLGTTR---PHEGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQY 173
P R+SS+F T+ PH+GID + P GTPI + G G++ A + G Y
Sbjct 225 PFLKKYRISSKFNPNRFNPITKKNSPHQGIDFAMPIGTPILSIGDGVILNAKFSIQAGNY 284
Query 174 VEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEV 224
+ I H Y+T+Y H +I+V++GD+V ++I G TG TGPHLH+EV
Sbjct 285 ITIQHNCSYITKYMHLKKILVKIGDKVKMRDKIGLSGNTGYSTGPHLHYEV 335
>Q46798 Uncharacterized lipoprotein YgeR [Escherichia coli (strain
K12)]
Length=251
Score = 73.9 bits (180), Expect = 1e-18
Identities = 41/99 (41%), Positives = 55/99 (56%), Gaps = 2/99 (2%)
Query 140 HEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQYVEINHGNGYLTRYAHASRIMVQVGD 198
++GID+SAP GTPIYA+G G V G GYG + I H Y+T YAH ++V G
Sbjct 145 NKGIDISAPRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQ 204
Query 199 RVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYL 237
V AG++IA +G T LHF++ +P YL
Sbjct 205 SVKAGQKIATMGSTD-AASVRLHFQIRYRATAIDPLRYL 242
>O31976 SPbeta prophage-derived uncharacterized transglycosylase
YomI [Bacillus subtilis (strain 168)]
Length=2285
Score = 75.9 bits (185), Expect = 1e-18
Identities = 48/151 (32%), Positives = 77/151 (51%), Gaps = 4/151 (3%)
Query 88 QTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSA 147
Q KK + S+ +S +S S+ + RVSS++G + + PH+G D +A
Sbjct 1531 QNYVKKIMANYSKSLSSATSSIASYYTNN---SAFRVSSKYGQQESGLRSSPHKGTDFAA 1587
Query 148 PSGTPIYASGPGIVTKAGWGTGYGQYVEINHGNGYLTRYAH-ASRIMVQVGDRVSAGERI 206
+GT I + G V AG+ G +V I +G + +Y H + V+ G V AG+ I
Sbjct 1588 KAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTI 1647
Query 207 ANVGCTGRCTGPHLHFEVVKDGQRKNPGSYL 237
VG TG TG HLH ++ ++G+ +P Y+
Sbjct 1648 GKVGSTGNSTGNHLHLQIEQNGKTIDPEKYM 1678
Score = 20.0 bits (40), Expect = 2.2
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 6 FKRFFMHPRRILLAFSLAASAASVAFADYQT 36
FK + ++I+ +S + S+A+ + A Y T
Sbjct 1527 FKETQNYVKKIMANYSKSLSSATSSIASYYT 1557
Score = 19.2 bits (38), Expect = 3.8
Identities = 13/56 (23%), Positives = 24/56 (43%), Gaps = 12/56 (21%)
Query 174 VEINHGNGYLTRYAHASR------------IMVQVGDRVSAGERIANVGCTGRCTG 217
VE+N GY T A +R I ++G+ S+ + + +G + + G
Sbjct 498 VELNDLIGYTTAIASTTRESGNIVGNSLKTIFARIGNNQSSIKALEQIGISVKTAG 553
Score = 18.1 bits (35), Expect = 8.7
Identities = 8/29 (28%), Positives = 16/29 (55%), Gaps = 0/29 (0%)
Query 80 EKSIELNNQTLEKKYPGSSSRYNTSNNNS 108
+K+IEL + + ++RY +S +S
Sbjct 248 KKTIELYQRQAQVNVQNLNTRYGSSMGSS 276
>O64046 Probable tape measure protein [Bacillus phage SPbeta]
Length=2285
Score = 75.9 bits (185), Expect = 1e-18
Identities = 48/151 (32%), Positives = 77/151 (51%), Gaps = 4/151 (3%)
Query 88 QTLEKKYPGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSA 147
Q KK + S+ +S +S S+ + RVSS++G + + PH+G D +A
Sbjct 1531 QNYVKKIMANYSKSLSSATSSIASYYTNN---SAFRVSSKYGQQESGLRSSPHKGTDFAA 1587
Query 148 PSGTPIYASGPGIVTKAGWGTGYGQYVEINHGNGYLTRYAH-ASRIMVQVGDRVSAGERI 206
+GT I + G V AG+ G +V I +G + +Y H + V+ G V AG+ I
Sbjct 1588 KAGTAIKSLQSGKVQIAGYSKTAGNWVVIKQDDGTVAKYMHMLNTPSVKAGQSVKAGQTI 1647
Query 207 ANVGCTGRCTGPHLHFEVVKDGQRKNPGSYL 237
VG TG TG HLH ++ ++G+ +P Y+
Sbjct 1648 GKVGSTGNSTGNHLHLQIEQNGKTIDPEKYM 1678
Score = 20.0 bits (40), Expect = 2.2
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 6 FKRFFMHPRRILLAFSLAASAASVAFADYQT 36
FK + ++I+ +S + S+A+ + A Y T
Sbjct 1527 FKETQNYVKKIMANYSKSLSSATSSIASYYT 1557
Score = 19.2 bits (38), Expect = 3.8
Identities = 13/56 (23%), Positives = 24/56 (43%), Gaps = 12/56 (21%)
Query 174 VEINHGNGYLTRYAHASR------------IMVQVGDRVSAGERIANVGCTGRCTG 217
VE+N GY T A +R I ++G+ S+ + + +G + + G
Sbjct 498 VELNDLIGYTTAIASTTRESGNIVGNSLKTIFARIGNNQSSIKALEQIGISVKTAG 553
Score = 18.1 bits (35), Expect = 8.7
Identities = 8/29 (28%), Positives = 16/29 (55%), Gaps = 0/29 (0%)
Query 80 EKSIELNNQTLEKKYPGSSSRYNTSNNNS 108
+K+IEL + + ++RY +S +S
Sbjct 248 KKTIELYQRQAQVNVQNLNTRYGSSMGSS 276
>Q5HJ99 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain COL)]
Length=316
Score = 74.3 bits (181), Expect = 1e-18
Identities = 49/148 (33%), Positives = 71/148 (48%), Gaps = 15/148 (10%)
Query 96 GSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYA 155
GS+S+ S + SWL + + +G G H G+D + P +P+Y+
Sbjct 175 GSASKATASGHAKDASWLTSR------KQLQPYGQYHGGGA---HYGVDYAMPENSPVYS 225
Query 156 SGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVGDRVSAGERIANVGCTG 213
G V +AGW G G V I N + Y H +R+ V GD+V AG++IA G TG
Sbjct 226 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTG 285
Query 214 RCTGPHLHFEVVKDG----QRKNPGSYL 237
T PH+HF+ + G +P SYL
Sbjct 286 NSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>Q6GK35 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain MRSA252)]
Length=316
Score = 74.3 bits (181), Expect = 1e-18
Identities = 49/148 (33%), Positives = 71/148 (48%), Gaps = 15/148 (10%)
Query 96 GSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYA 155
GS+S+ S + SWL + + +G G H G+D + P +P+Y+
Sbjct 175 GSASKATASGHAKDASWLTSR------KQLQPYGQYHGGGA---HYGVDYAMPENSPVYS 225
Query 156 SGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVGDRVSAGERIANVGCTG 213
G V +AGW G G V I N + Y H +R+ V GD+V AG++IA G TG
Sbjct 226 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTG 285
Query 214 RCTGPHLHFEVVKDG----QRKNPGSYL 237
T PH+HF+ + G +P SYL
Sbjct 286 NSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>Q7A7T0 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain N315)]
Length=316
Score = 74.3 bits (181), Expect = 1e-18
Identities = 49/148 (33%), Positives = 71/148 (48%), Gaps = 15/148 (10%)
Query 96 GSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYA 155
GS+S+ S + SWL + + +G G H G+D + P +P+Y+
Sbjct 175 GSASKATASGHAKDASWLTSR------KQLQPYGQYHGGGA---HYGVDYAMPENSPVYS 225
Query 156 SGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVGDRVSAGERIANVGCTG 213
G V +AGW G G V I N + Y H +R+ V GD+V AG++IA G TG
Sbjct 226 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTG 285
Query 214 RCTGPHLHFEVVKDG----QRKNPGSYL 237
T PH+HF+ + G +P SYL
Sbjct 286 NSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>A0A0H3K6J4 Glycyl-glycine endopeptidase LytM [Staphylococcus
aureus (strain Newman)]
Length=316
Score = 74.3 bits (181), Expect = 1e-18
Identities = 49/148 (33%), Positives = 71/148 (48%), Gaps = 15/148 (10%)
Query 96 GSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYA 155
GS+S+ S + SWL + + +G G H G+D + P +P+Y+
Sbjct 175 GSASKATASGHAKDASWLTSR------KQLQPYGQYHGGGA---HYGVDYAMPENSPVYS 225
Query 156 SGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVGDRVSAGERIANVGCTG 213
G V +AGW G G V I N + Y H +R+ V GD+V AG++IA G TG
Sbjct 226 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTG 285
Query 214 RCTGPHLHFEVVKDG----QRKNPGSYL 237
T PH+HF+ + G +P SYL
Sbjct 286 NSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>O33599 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=316
Score = 74.3 bits (181), Expect = 1e-18
Identities = 49/148 (33%), Positives = 71/148 (48%), Gaps = 15/148 (10%)
Query 96 GSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYA 155
GS+S+ S + SWL + + +G G H G+D + P +P+Y+
Sbjct 175 GSASKATASGHAKDASWLTSR------KQLQPYGQYHGGGA---HYGVDYAMPENSPVYS 225
Query 156 SGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVGDRVSAGERIANVGCTG 213
G V +AGW G G V I N + Y H +R+ V GD+V AG++IA G TG
Sbjct 226 LTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTG 285
Query 214 RCTGPHLHFEVVKDG----QRKNPGSYL 237
T PH+HF+ + G +P SYL
Sbjct 286 NSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>Q8NYG1 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain MW2)]
Length=316
Score = 73.2 bits (178), Expect = 4e-18
Identities = 40/104 (38%), Positives = 56/104 (54%), Gaps = 6/104 (6%)
Query 140 HEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVG 197
H G+D + P +P+Y+ G V +AGW G G V I N + Y H +R+ V G
Sbjct 210 HYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAG 269
Query 198 DRVSAGERIANVGCTGRCTGPHLHFEVVKDG----QRKNPGSYL 237
D+V AG++IA G TG T PH+HF+ + G +P SYL
Sbjct 270 DKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>Q6GCJ6 Glycyl-glycine endopeptidase LytM [Staphylococcus aureus
(strain MSSA476)]
Length=316
Score = 73.2 bits (178), Expect = 4e-18
Identities = 40/104 (38%), Positives = 56/104 (54%), Gaps = 6/104 (6%)
Query 140 HEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQYVEINHGNGYLTR-YAHASRIMVQVG 197
H G+D + P +P+Y+ G V +AGW G G V I N + Y H +R+ V G
Sbjct 210 HYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAG 269
Query 198 DRVSAGERIANVGCTGRCTGPHLHFEVVKDG----QRKNPGSYL 237
D+V AG++IA G TG T PH+HF+ + G +P SYL
Sbjct 270 DKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYL 313
>A0A0H3C9Q9 Cell division protein DipM [Caulobacter vibrioides
(strain NA1000 / CB15N)]
Length=609
Score = 72.4 bits (176), Expect = 1e-17
Identities = 37/102 (36%), Positives = 59/102 (58%), Gaps = 4/102 (4%)
Query 124 VSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGTG-YGQYVEINHGNGY 182
+ S FG + GT + ++G+++ AP GTP+ +S G + AG +G V + H +G+
Sbjct 490 IISSFGVK---GTGQRNDGLNIRAPQGTPVLSSADGEIAYAGNQVPTFGNLVLVKHADGW 546
Query 183 LTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEV 224
+T YAH S V++ +V GE++ VG TG P LHFE+
Sbjct 547 VTAYAHLSSTNVKMRQQVKQGEQLGTVGATGGVNEPQLHFEM 588
>P47764 Lipoprotein NlpD [Yersinia enterocolitica]
Length=97
Score = 65.5 bits (158), Expect = 6e-17
Identities = 36/95 (38%), Positives = 53/95 (56%), Gaps = 2/95 (2%)
Query 144 DLSAPSGTPIYASGPGIVTKAGWGTG-YGQYVEINHGNGYLTRYAHASRIMVQVGDRVSA 202
D++ G PI+A+ G V AG G YG + I H + YL+ Y H ++V+ + V A
Sbjct 1 DIAGSRGQPIFATANGRVVYAGNALGGYGNLIIIKHNDDYLSAYVHNDTMLVREQEEVKA 60
Query 203 GERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYL 237
G++IA +G TG + LHFE+ G+ NP YL
Sbjct 61 GQKIATMGSTG-TSSVRLHFEIRYKGKSVNPLRYL 94
>P37690 Murein hydrolase activator EnvC [Escherichia coli (strain
K12)]
Length=419
Score = 70.1 bits (170), Expect = 7e-17
Identities = 37/97 (38%), Positives = 53/97 (55%), Gaps = 0/97 (0%)
Query 141 EGIDLSAPSGTPIYASGPGIVTKAGWGTGYGQYVEINHGNGYLTRYAHASRIMVQVGDRV 200
+G+ + A GT + A G V A W GYG V + HG G ++ Y + +V VG +V
Sbjct 321 KGMVIGASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQV 380
Query 201 SAGERIANVGCTGRCTGPHLHFEVVKDGQRKNPGSYL 237
AG+ IA VG +G P L+FE+ + GQ NP +L
Sbjct 381 RAGQPIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWL 417
>P0ADA3 Murein hydrolase activator NlpD [Escherichia coli (strain
K12)]
Length=379
Score = 68.9 bits (167), Expect = 2e-16
Identities = 47/144 (33%), Positives = 72/144 (50%), Gaps = 7/144 (5%)
Query 95 PGSSSRYNTSNNNSPYSWLVTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIY 154
P +S+ T ++ S + + T P +V FG + ++GID++ G I
Sbjct 239 PTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGA-----SEGGNKGIDIAGSKGQAII 293
Query 155 ASGPGIVTKAGWGT-GYGQYVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTG 213
A+ G V AG GYG + I H + YL+ YAH ++V+ V AG++IA +G TG
Sbjct 294 ATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG 353
Query 214 RCTGPHLHFEVVKDGQRKNPGSYL 237
+ LHFE+ G+ NP YL
Sbjct 354 -TSSTRLHFEIRYKGKSVNPLRYL 376
>Q56131 Murein hydrolase activator NlpD [Salmonella typhi]
Length=373
Score = 68.6 bits (166), Expect = 2e-16
Identities = 56/185 (30%), Positives = 85/185 (46%), Gaps = 17/185 (9%)
Query 54 TLSQGSYSHPDDLDLPASARVSVTLREKSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWL 113
T S+GS + LP + + + + T+ P +SS +TS S + W
Sbjct 202 TYSEGSGEQSANKMLPNNKPAGTVV---TAPVTAPTVSTTEPNASST-STSAPISAWRW- 256
Query 114 VTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQ 172
P +V FG + ++GID++ G I A+ G V AG GYG
Sbjct 257 -----PTDGKVIENFGA-----SEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGN 306
Query 173 YVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKN 232
+ I H + YL+ YAH ++V+ V AG++IA +G TG + LHFE+ G+ N
Sbjct 307 LIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG-TSSTRLHFEIRYKGKSVN 365
Query 233 PGSYL 237
P YL
Sbjct 366 PLRYL 370
>P40827 Murein hydrolase activator NlpD [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=377
Score = 68.6 bits (166), Expect = 2e-16
Identities = 56/185 (30%), Positives = 85/185 (46%), Gaps = 17/185 (9%)
Query 54 TLSQGSYSHPDDLDLPASARVSVTLREKSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWL 113
T S+GS + LP + + + + T+ P +SS +TS S + W
Sbjct 206 TYSEGSGEQSANKMLPNNKPAGTVV---TAPVTAPTVSTTEPNASST-STSAPISAWRW- 260
Query 114 VTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQ 172
P +V FG + ++GID++ G I A+ G V AG GYG
Sbjct 261 -----PTDGKVIENFGA-----SEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGN 310
Query 173 YVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKN 232
+ I H + YL+ YAH ++V+ V AG++IA +G TG + LHFE+ G+ N
Sbjct 311 LIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG-TSSTRLHFEIRYKGKSVN 369
Query 233 PGSYL 237
P YL
Sbjct 370 PLRYL 374
>P39700 Murein hydrolase activator NlpD [Salmonella dublin]
Length=377
Score = 68.6 bits (166), Expect = 2e-16
Identities = 56/185 (30%), Positives = 85/185 (46%), Gaps = 17/185 (9%)
Query 54 TLSQGSYSHPDDLDLPASARVSVTLREKSIELNNQTLEKKYPGSSSRYNTSNNNSPYSWL 113
T S+GS + LP + + + + T+ P +SS +TS S + W
Sbjct 206 TYSEGSGEQSANKMLPNNKPAGTVV---TAPVTAPTVSTTEPNASST-STSAPISAWRW- 260
Query 114 VTHPLPDMVRVSSEFGTRTLLGTTRPHEGIDLSAPSGTPIYASGPGIVTKAGWGT-GYGQ 172
P +V FG + ++GID++ G I A+ G V AG GYG
Sbjct 261 -----PTDGKVIENFGA-----SEGGNKGIDIAGSKGQAIVATADGRVVYAGNALRGYGN 310
Query 173 YVEINHGNGYLTRYAHASRIMVQVGDRVSAGERIANVGCTGRCTGPHLHFEVVKDGQRKN 232
+ I H + YL+ YAH ++V+ V AG++IA +G TG + LHFE+ G+ N
Sbjct 311 LIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGSTG-TSSTRLHFEIRYKGKSVN 369
Query 233 PGSYL 237
P YL
Sbjct 370 PLRYL 374
Lambda K H a alpha
0.317 0.133 0.397 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2131200
Database: 51f0bd543afb0b7aa99424790ab27698.SwissProt.fasta
Posted date: May 20, 2024 9:58 AM
Number of letters in database: 12,250
Number of sequences in database: 23
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
