BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 48607ed87e47c2b006d1e76215a8af34.SwissProt.fasta
9 sequences; 2,204 total letters
Query= ACIAD3478
Length=236
Score E
Sequences producing significant alignments: (Bits) Value
O83075 Ribosomal RNA small subunit methyltransferase E [Treponema... 70.1 5e-18
O51089 Ribosomal RNA small subunit methyltransferase E 1 [Borreli... 52.4 6e-12
O50188 Ribosomal RNA small subunit methyltransferase E [Mesomycop... 49.7 5e-11
P44627 Ribosomal RNA small subunit methyltransferase E [Haemophil... 47.0 4e-10
Q92J59 Ribosomal RNA small subunit methyltransferase E [Rickettsi... 39.7 1e-07
Q8K9E4 Ribosomal RNA small subunit methyltransferase E [Buchnera ... 39.3 2e-07
P54461 Ribosomal RNA small subunit methyltransferase E [Bacillus ... 38.9 2e-07
P57488 Ribosomal RNA small subunit methyltransferase E [Buchnera ... 38.1 4e-07
O66552 Ribosomal RNA small subunit methyltransferase E [Aquifex a... 36.6 1e-06
>O83075 Ribosomal RNA small subunit methyltransferase E [Treponema
pallidum (strain Nichols)]
Length=266
Score = 70.1 bits (170), Expect = 5e-18
Identities = 68/239 (28%), Positives = 106/239 (44%), Gaps = 21/239 (9%)
Query 1 MNIVLLEPKDTAQAEWRIHSARQLS-------HLHKQLNIQVDDTLKVGIRNGKRYLTRI 53
MNIVL E ++ +H LS H+ + L + K GI NG + RI
Sbjct 1 MNIVLFEQEEV------VHGCAVLSFRDSRFCHIKRVLKLSAGACFKAGIINGVKGSARI 54
Query 54 -VAIEEQEIRV-TPIQQEACPAKLPVTLIVAMPRPKVLRRLIMDSVTLGVERICLTHSYR 111
+A E+ + V ++ E C A P+ L++ PRP LRR++ D +LG+ I L +
Sbjct 55 SLATEKYLVAVFEKLEYEDC-ALFPLHLVIGFPRPIQLRRILRDVSSLGISSIHLVGTEL 113
Query 112 VDKSYWQT--PFLQQLDDYITLGLEQAGDTIVPDIQLYKRFKPFVEDVLPSLIAPLRPAF 169
++SY + ++++ Y+ GLEQAG T +P I + + + F L
Sbjct 114 GERSYLDSGLAHMEKMHTYLIRGLEQAGGTKLPLITVSESVRTFCSQHTHILGDSTHQKL 173
Query 170 V---AHPYAETAMPHAIEHPCSIIIGPEGGFIPYEVDLLIKNGCQAYHLGSRILRTETA 225
+ + + I IG E G+ E L G +A +G R LRTETA
Sbjct 174 ILDTKNTLTDLGSAALRGDVLWIAIGSERGWTESERLLFSAMGFRAVDMGRRTLRTETA 232
>O51089 Ribosomal RNA small subunit methyltransferase E 1 [Borreliella
burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532
/ B31)]
Length=238
Score = 52.4 bits (124), Expect = 6e-12
Identities = 48/204 (24%), Positives = 94/204 (46%), Gaps = 8/204 (4%)
Query 26 HLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEIRVTPIQQEACPAKLP-VTLIVAMP 84
HL K L ++ +D K GI G++ + + +++++ I + KL + +++ M
Sbjct 24 HLVKILKLKDNDKFKFGIL-GEKNIYHCIYKKDKKLFFKKIFKVGESNKLKKLYVLIGMI 82
Query 85 RPKVLRRLIMDSVTLGVERICLTHSYRVDKSYWQTPFLQQLD--DYITLGLEQAGDTIVP 142
RP V +R+I + ++G +I ++ +KSY + + D ++ G Q T +P
Sbjct 83 RPIVAKRIIKELASIGTYKIIFFNTELTEKSYLNSKIFKNNDCEKHLIAGAMQGKITYLP 142
Query 143 DIQLYKRFKPFVEDVLPSLIAPLRPAFVAHPYAETAMPHAIE-HPCSIIIGPEGGFIPYE 201
I++ K K ++ + + +E + + + II+GPE GF E
Sbjct 143 KIKIIKNLKESLKYIQQE---NFEIKILLEKNSEKNLIDIEQINNAVIIVGPERGFTEKE 199
Query 202 VDLLIKNGCQAYHLGSRILRTETA 225
L+ + Y + + LRTETA
Sbjct 200 KQLIAQYNFSPYSISTNTLRTETA 223
>O50188 Ribosomal RNA small subunit methyltransferase E [Mesomycoplasma
hyopneumoniae (strain 232)]
Length=227
Score = 49.7 bits (117), Expect = 5e-11
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 7/184 (4%)
Query 49 YLTRIVAIEEQEIRVTPIQQEACPAKLPVTLIVAMPRPKVLRRLIMDSVTLGVERICLTH 108
YL R+V + + I+ P K V L +A+ + K I +V +GV I +
Sbjct 43 YLVRLVPNSNKAEIIEKIKGNNEP-KNKVVLALAILKTKSFEFAIQKAVEIGVNEIWPFY 101
Query 109 SYRVDK--SYWQTPFLQQLDDYITLGLEQAGDTIVPDIQLYKRFKPFVEDVLPSLIAPLR 166
S V + S L++ + +Q+ ++P I L +K +E P++
Sbjct 102 SKNVSQKLSGDLEKKLKRWEQICLHSAQQSFRNLIPKINLPINYKDLLEQAKNF---PVK 158
Query 167 PAFVAHPYAETAMPHAIEHPCSIIIGPEGGFIPYEVDLLIKNGCQAYHLGSRILRTETAV 226
+P ++ IIIGPEGGF E+ K G Q+ LG RILR+ETA
Sbjct 159 LISFERAKNNINIPDNPQNTI-IIIGPEGGFDDVEIQQAEKLGFQSITLGKRILRSETAA 217
Query 227 SYLL 230
+LL
Sbjct 218 IFLL 221
>P44627 Ribosomal RNA small subunit methyltransferase E [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=245
Score = 47.0 bits (110), Expect = 4e-10
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 20/212 (9%)
Query 25 SHLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEIRVTPIQQEACPAK--LPVTLIVA 82
+H+ + L + + L++ + Y +I+ ++ ++V + +E + L + L
Sbjct 26 NHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILGRELADKESHLKIHLGQV 85
Query 83 MPRPKVLRRLIMDSVTLGVERICLTHSYR---------VDKSYWQTPFLQQLDDYITLGL 133
+ R + + I SV LGV I S R +DK +QQ
Sbjct 86 ISRGERMEFTIQKSVELGVNVITPLWSERCGVKLDAERMDKK------IQQWQKIAIAAC 139
Query 134 EQAGDTIVPDIQLYKRFKPFVEDVLPSLIAPLRPAFVAHPYAETAMPHAIEHPCSIIIGP 193
EQ G IVP+I+ + + + + +L L P AH Y+ +P ++IG
Sbjct 140 EQCGRNIVPEIRPLMKLQDWCAENDGALKLNLHPR--AH-YSIKTLPTIPAGGVRLLIGS 196
Query 194 EGGFIPYEVDLLIKNGCQAYHLGSRILRTETA 225
EGG E+ + G LG R+LRTETA
Sbjct 197 EGGLSAQEIAQTEQQGFTEILLGKRVLRTETA 228
>Q92J59 Ribosomal RNA small subunit methyltransferase E [Rickettsia
conorii (strain ATCC VR-613 / Malish 7)]
Length=244
Score = 39.7 bits (91), Expect = 1e-07
Identities = 52/246 (21%), Positives = 98/246 (40%), Gaps = 46/246 (19%)
Query 2 NIVLLEPKDTAQAEWRIHSARQLSHLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEI 61
N + + + ++ + S + ++ L ++V+D L++ +L +I I + +
Sbjct 4 NRIYINSRLAENSKIELASDHHVHYVKTVLRLKVNDGLRLFNGTDGEFLAQINDIGKNNL 63
Query 62 RVTPIQQEACP-AKLPVTLIVAMPRPKVLRRLIMDSVTLGVERICLTHSYRVDKSYWQTP 120
V +Q P K +TL VA+ + L I + LG+ +I P
Sbjct 64 SVRLKEQLKKPYTKSTLTLAVAIIKQDKLMLAINMATQLGITKII--------------P 109
Query 121 FLQQLDDYITLGLEQAGDTIVPDIQLYKRFKPFVEDVLPSLIAPLRPAFVAHPYAE---T 177
+ + + ++ +E+ ++ + +R P + + A Y +
Sbjct 110 LITRWCQFRSVNIERLTKCVIEATEQSERLTPPI----------IEKAITIQDYLKKNNN 159
Query 178 AMPHAIEHP-----------------CSIIIGPEGGFIPYEVDLLIK-NGCQAYHLGSRI 219
M +A EH +II+GPEGGF E++LL ++ LGS I
Sbjct 160 LMLYANEHEKEENSILRISSSLSNSDITIIVGPEGGFTNDELELLASYKNTKSISLGSNI 219
Query 220 LRTETA 225
LR ETA
Sbjct 220 LRAETA 225
>Q8K9E4 Ribosomal RNA small subunit methyltransferase E [Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)]
Length=246
Score = 39.3 bits (90), Expect = 2e-07
Identities = 20/38 (53%), Positives = 26/38 (68%), Gaps = 0/38 (0%)
Query 189 IIIGPEGGFIPYEVDLLIKNGCQAYHLGSRILRTETAV 226
++IG EGGF E++ +I+ G LG RILRTETAV
Sbjct 194 LLIGSEGGFSFLEIEKIIQYGFIPIKLGPRILRTETAV 231
>P54461 Ribosomal RNA small subunit methyltransferase E [Bacillus
subtilis (strain 168)]
Length=256
Score = 38.9 bits (89), Expect = 2e-07
Identities = 21/45 (47%), Positives = 25/45 (56%), Gaps = 0/45 (0%)
Query 189 IIIGPEGGFIPYEVDLLIKNGCQAYHLGSRILRTETAVSYLLGRL 233
I+ GPEGG EV+ L + LG RILRTETA Y L +
Sbjct 201 IVFGPEGGLTEAEVERLTEQDGVTCGLGPRILRTETAPLYALSAI 245
>P57488 Ribosomal RNA small subunit methyltransferase E [Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)]
Length=253
Score = 38.1 bits (87), Expect = 4e-07
Identities = 45/207 (22%), Positives = 88/207 (43%), Gaps = 12/207 (6%)
Query 26 HLHKQLNIQVDDTLKVGIRNGKRYLTRIVAIEEQEIRVTPIQQ--EACPAKLPVTLIVAM 83
++ K L ++++D L++ + +I+ I ++ I++ ++ + + L + L +
Sbjct 36 YVTKVLRMKIEDILEIFNNTHYIFFAKIIDISKKIIKIQTFKKILKNLESPLHIHLGQVI 95
Query 84 PRPKVLRRLIMDSVTLGVERIC---LTHSYRVDKSYWQTPFLQQLDDYITLGLEQAGDTI 140
+ + + I S+ +GV+ I + + K + +++ + Q I
Sbjct 96 SKNEKMDFTIQKSIEIGVKTITPLFFENDHFQKKRINFSNKIKRWEKIAISACRQCNRNI 155
Query 141 VPDIQLYKRFKPFVEDVLPSLIAPLRPAFVAHPYAETAMPHAIE--HPCSIIIGPEGGFI 198
+P I++ + E+ + + HP + M E IIIG E GF
Sbjct 156 IPKIKIPMNVFHWCENNQNN-----DKKIIFHPKSTLTMKCLTEPIKYIQIIIGSERGFF 210
Query 199 PYEVDLLIKNGCQAYHLGSRILRTETA 225
E +IK G LG RILRTETA
Sbjct 211 NDEFQKIIKYGFIPIRLGPRILRTETA 237
>O66552 Ribosomal RNA small subunit methyltransferase E [Aquifex
aeolicus (strain VF5)]
Length=229
Score = 36.6 bits (83), Expect = 1e-06
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 0/39 (0%)
Query 188 SIIIGPEGGFIPYEVDLLIKNGCQAYHLGSRILRTETAV 226
S+++GPEGGF E +L + G ++ L LRTETAV
Sbjct 181 SVVVGPEGGFSKRESQILREKGFKSVLLEPYTLRTETAV 219
Lambda K H a alpha
0.326 0.142 0.431 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 368676
Database: 48607ed87e47c2b006d1e76215a8af34.SwissProt.fasta
Posted date: May 9, 2024 11:51 AM
Number of letters in database: 2,204
Number of sequences in database: 9
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
