BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 89f72101796918d23aad1b71a600e3c9.SwissProt.fasta
15 sequences; 2,225 total letters
Query= ACIAD3472
Length=136
Score E
Sequences producing significant alignments: (Bits) Value
P96653 HTH-type transcriptional regulator LrpB [Bacillus subtilis... 75.9 4e-22
P96652 HTH-type transcriptional regulator LrpA [Bacillus subtilis... 65.9 2e-18
P96582 HTH-type transcriptional regulator LrpC [Bacillus subtilis... 56.6 8e-15
Q8U067 Uncharacterized HTH-type transcriptional regulator PF1734 ... 56.2 1e-14
Q9V1E5 Uncharacterized HTH-type transcriptional regulator PYRAB04... 52.4 3e-13
O59309 Uncharacterized HTH-type transcriptional regulator PH1692 ... 52.0 5e-13
O57880 Uncharacterized HTH-type transcriptional regulator PH0140 ... 50.1 3e-12
O05217 Uncharacterized HTH-type transcriptional regulator YwrC [B... 49.3 6e-12
Q9V2K6 Uncharacterized HTH-type transcriptional regulator PYRAB00... 48.5 1e-11
Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01... 47.4 3e-11
Q44333 Proline dehydrogenase transcriptional activator [Rhizobium... 43.9 6e-10
Q980W9 HTH-type transcriptional regulator LysM [Saccharolobus sol... 41.2 5e-09
Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcu... 37.7 8e-08
P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furios... 36.6 2e-07
P0ACJ5 DNA-binding transcriptional activator DecR [Escherichia co... 33.9 2e-06
>P96653 HTH-type transcriptional regulator LrpB [Bacillus subtilis
(strain 168)]
Length=149
Score = 75.9 bits (185), Expect = 4e-22
Identities = 41/135 (30%), Positives = 75/135 (56%), Gaps = 6/135 (4%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI-----A 61
+D ID +IL LL +++R+ K+IG +H TGQAVG RI + + G+I+ Y++ +
Sbjct 3 IDSIDFQILQLLNKNARIQWKEIGEKIHMTGQAVGNRIKKMEDNGIIKAYSIVVDELKMG 62
Query 62 YPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMV-VAHFSPQELNLFIEQI 120
+ F+ F+N ++ I ++ E ++V G+ACY++ V S + LN + +
Sbjct 63 FSFTAFVFFFMNAYMHDDLLKFIATRNEISEAHRVSGDACYLLKVTVHSQEVLNHLLNDL 122
Query 121 SKWCRYSVESVIKKI 135
K+ Y + IK++
Sbjct 123 LKYGNYQLYLSIKEV 137
>P96652 HTH-type transcriptional regulator LrpA [Bacillus subtilis
(strain 168)]
Length=136
Score = 65.9 bits (159), Expect = 2e-18
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQKQ 66
+D ID KIL L ++SRL+ K++G VH T A +R+ LI+ G+I+ ++ + +
Sbjct 2 IDEIDKKILDELSKNSRLTMKKLGEKVHLTAPATASRVVKLIDNGIIKGCSIEVNQVKLG 61
Query 67 F-IQLFLN--------EPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHFSPQE-LNLF 116
F I FLN +P + IE N+ V YKV G+ CY++ F E L+ F
Sbjct 62 FSIHAFLNIYIEKIHHQPYLAFIETQDNY---VINNYKVSGDGCYLLECKFPSNEVLDQF 118
Query 117 IEQISKWCRYSVESVIKK 134
+ ++K Y V VI K
Sbjct 119 LNDLNKHANYKVSIVIGK 136
>P96582 HTH-type transcriptional regulator LrpC [Bacillus subtilis
(strain 168)]
Length=144
Score = 56.6 bits (135), Expect = 8e-15
Identities = 35/135 (26%), Positives = 67/135 (50%), Gaps = 6/135 (4%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI-----A 61
LD IDL I+ LK+DSRLS +++G + + +V R+ L G+I++YTL +
Sbjct 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLG 62
Query 62 YPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMV-VAHFSPQELNLFIEQI 120
P ++ + + ++ I ++ Y++ G ACYM+ + S + + FI +
Sbjct 63 LPVSCIVEATVKNADYERFKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKT 122
Query 121 SKWCRYSVESVIKKI 135
S + + + +I
Sbjct 123 SPYAQTVTHVIFSEI 137
>Q8U067 Uncharacterized HTH-type transcriptional regulator PF1734
[Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM
8422 / Vc1)]
Length=148
Score = 56.2 bits (134), Expect = 1e-14
Identities = 37/121 (31%), Positives = 66/121 (55%), Gaps = 6/121 (5%)
Query 6 DLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQK 65
++D +D KIL+LL +DSRLS+++I ++ + RI L + GVI+ +T+ + Y +
Sbjct 2 EIDDLDRKILSLLIEDSRLSYREIAKKLNVAVGTIYNRIKKLEDMGVIQGFTVKLNYEKL 61
Query 66 QF-----IQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHF-SPQELNLFIEQ 119
+ I + + EIE II + V Y V G +V+A F S +++N F++
Sbjct 62 GYELTAIIGIKAQGKKIREIERIIARDKHVTCVYDVTGEYDIIVIAKFRSREDMNRFVKS 121
Query 120 I 120
+
Sbjct 122 V 122
>Q9V1E5 Uncharacterized HTH-type transcriptional regulator PYRAB04820
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=147
Score = 52.4 bits (124), Expect = 3e-13
Identities = 37/120 (31%), Positives = 62/120 (52%), Gaps = 6/120 (5%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLA-----IA 61
LD +D KI+ +L +DSR+S+++I ++ + RI L E GVI+ +TL I
Sbjct 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
Query 62 YPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHFSPQE-LNLFIEQI 120
Y + + + EIE II ++V Y V G +V+A F +E +N F++ +
Sbjct 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
>O59309 Uncharacterized HTH-type transcriptional regulator PH1692
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=148
Score = 52.0 bits (123), Expect = 5e-13
Identities = 36/121 (30%), Positives = 64/121 (53%), Gaps = 6/121 (5%)
Query 6 DLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTL-----AI 60
+LD +D KIL +L +DSR S+++I ++ + RI L + GVI+ +T+ +I
Sbjct 2 ELDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNYESI 61
Query 61 AYPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVVAHF-SPQELNLFIEQ 119
Y I + + EIE II ++V Y V G +V+A F + +++N F++
Sbjct 62 GYDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRFVKG 121
Query 120 I 120
+
Sbjct 122 V 122
>O57880 Uncharacterized HTH-type transcriptional regulator PH0140
[Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 /
JCM 9974 / NBRC 100139 / OT-3)]
Length=158
Score = 50.1 bits (118), Expect = 3e-12
Identities = 37/124 (30%), Positives = 63/124 (51%), Gaps = 7/124 (6%)
Query 6 DLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI----- 60
+LD ID IL LL++D R+S+ +I ++ V AR++ L+++GVI ++ I
Sbjct 11 ELDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPFKA 70
Query 61 AYPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMG-NACYMVVAHFSPQELNLFI-E 118
Y FI + + ++ + F +VD V G + +M V QEL FI E
Sbjct 71 GYEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFILE 130
Query 119 QISK 122
+++K
Sbjct 131 KMAK 134
>O05217 Uncharacterized HTH-type transcriptional regulator YwrC
[Bacillus subtilis (strain 168)]
Length=158
Score = 49.3 bits (116), Expect = 6e-12
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 6/78 (8%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQK- 65
LD D +IL +L ++ R+S+ +G V + AV ARI+ LIE GVIE++T A+ P K
Sbjct 12 LDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFT-AVINPAKI 70
Query 66 -QFIQLFLN---EPRFSE 79
+ +F N EP+F E
Sbjct 71 GIHVSVFFNVEVEPQFLE 88
>Q9V2K6 Uncharacterized HTH-type transcriptional regulator PYRAB00690
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=148
Score = 48.5 bits (114), Expect = 1e-11
Identities = 41/144 (28%), Positives = 80/144 (56%), Gaps = 21/144 (15%)
Query 4 MQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTL----- 58
M+ LD +D++++ +L Q+SRL+++++ L++ T Q + RI+ L + GVI+++T+
Sbjct 1 MRKLDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLD 60
Query 59 AIAYPQKQFIQLFLNEPRFSEIENI---INHFEQVDEFYKVMGNACYMVVAHFSPQEL-- 113
+ Y F+ + L P SE++ + I++ E V E K +G ++V P++L
Sbjct 61 KLGY-MYAFVLVKLRVP--SEVDAMISEISNVEYVKEIEKGVGR-YNLIVRLLLPKDLKE 116
Query 114 -----NLFIEQISKWCRYSVESVI 132
N F+++I SVE V+
Sbjct 117 AEGIINEFLQKIKN--AESVEVVL 138
>Q9V2D7 Uncharacterized HTH-type transcriptional regulator PYRAB01370
[Pyrococcus abyssi (strain GE5 / Orsay)]
Length=158
Score = 47.4 bits (111), Expect = 3e-11
Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query 2 KKMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI- 60
+K+Q LD ID IL LL++D R+S+ +I ++ V AR++ LI +GVI ++ I
Sbjct 8 RKVQ-LDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALIN 66
Query 61 ----AYPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMG-NACYMVVAHFSPQELNL 115
Y FI + + ++ + +VD V G + +M V QEL
Sbjct 67 PFKAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELER 126
Query 116 FI-EQISK 122
FI E+++K
Sbjct 127 FILEKMAK 134
>Q44333 Proline dehydrogenase transcriptional activator [Rhizobium
radiobacter]
Length=156
Score = 43.9 bits (102), Expect = 6e-10
Identities = 31/111 (28%), Positives = 53/111 (48%), Gaps = 10/111 (9%)
Query 3 KMQDLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAY 62
K DLD DLKIL L +D R+S Q+ V + R+ L+++G I + A+
Sbjct 6 KTDDLDHFDLKILEALSEDGRMSVLQLSKRVGLSKTPCQTRLKRLVDEGYILGFR-AVLN 64
Query 63 PQK------QFIQLFLNEPR---FSEIENIINHFEQVDEFYKVMGNACYMV 104
PQK F ++ L++ R E + ++V+E + + G Y++
Sbjct 65 PQKLGVDHIAFAEVKLSDTREKALEEFNTAVRKIKEVEECHMIAGAFDYLL 115
>Q980W9 HTH-type transcriptional regulator LysM [Saccharolobus
solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2)]
Length=142
Score = 41.2 bits (95), Expect = 5e-09
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 3/103 (3%)
Query 6 DLDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQK 65
++D DLKIL +LK+++R + I + + A+ RI LI QG+I+R+T+ +
Sbjct 5 NIDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELENE 64
Query 66 -QFIQLFLNEPRF--SEIENIINHFEQVDEFYKVMGNACYMVV 105
+ I + + P+ EI I V+ Y+ G+ +V+
Sbjct 65 IRAIVMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVI 107
>Q58133 HTH-type transcriptional regulator Ptr2 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440)]
Length=140
Score = 37.7 bits (86), Expect = 8e-08
Identities = 22/59 (37%), Positives = 34/59 (58%), Gaps = 1/59 (2%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAIAYPQK 65
+D DLKI+ +L +D R S+ I + + ++ R+ L E+GVI+ YT AI P K
Sbjct 1 MDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYT-AIIDPSK 58
>P42180 HTH-type transcriptional regulator LrpA [Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)]
Length=141
Score = 36.6 bits (83), Expect = 2e-07
Identities = 27/104 (26%), Positives = 46/104 (44%), Gaps = 5/104 (5%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVIERYTLAI-----A 61
+D D IL +L++D+R +I + + AV R+ L E+G+IE YT+ I
Sbjct 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query 62 YPQKQFIQLFLNEPRFSEIENIINHFEQVDEFYKVMGNACYMVV 105
Y + + E+ + ++ V E Y G+ M V
Sbjct 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAV 105
>P0ACJ5 DNA-binding transcriptional activator DecR [Escherichia
coli (strain K12)]
Length=152
Score = 33.9 bits (76), Expect = 2e-06
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 0/47 (0%)
Query 7 LDPIDLKILALLKQDSRLSHKQIGALVHRTGQAVGARISHLIEQGVI 53
LD ID K+LALL+QD LS + + V+ T R+ L + G++
Sbjct 2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGIL 48
Lambda K H a alpha
0.329 0.142 0.416 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 178190
Database: 89f72101796918d23aad1b71a600e3c9.SwissProt.fasta
Posted date: May 20, 2024 1:14 AM
Number of letters in database: 2,225
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
