BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 669fb605f3cc308acddc66210950581a.SwissProt.fasta
           2 sequences; 208 total letters



Query= ACIAD3464

Length=111
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0AF55 Inner membrane protein YjcH [Shigella flexneri]                82.0    2e-26
P0AF54 Inner membrane protein YjcH [Escherichia coli (strain K12)]    82.0    2e-26


>P0AF55 Inner membrane protein YjcH [Shigella flexneri]
Length=104

 Score = 82.0 bits (201),  Expect = 2e-26
 Identities = 42/102 (41%), Positives = 66/102 (65%), Gaps = 1/102 (1%)

Query  1    MDDVQVERILQNPKFKKMVSKKATLSWTLTIIMLIVYVGFMLLVGYNKEFLMSSFSGGVT  60
            M+    +RI  N  F+++V K+   +  L+IIML VY+GF+LL+ +   +L +  +   +
Sbjct  1    MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS  60

Query  61   -TWGIPLGLGIIVLSFVLCGVYSYIANNTLDQLNEEALREVE  101
             T GIP+G+G+IV+SFVL G+Y + AN   D+LN E L EV+
Sbjct  61   VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ  102


>P0AF54 Inner membrane protein YjcH [Escherichia coli (strain 
K12)]
Length=104

 Score = 82.0 bits (201),  Expect = 2e-26
 Identities = 42/102 (41%), Positives = 66/102 (65%), Gaps = 1/102 (1%)

Query  1    MDDVQVERILQNPKFKKMVSKKATLSWTLTIIMLIVYVGFMLLVGYNKEFLMSSFSGGVT  60
            M+    +RI  N  F+++V K+   +  L+IIML VY+GF+LL+ +   +L +  +   +
Sbjct  1    MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTS  60

Query  61   -TWGIPLGLGIIVLSFVLCGVYSYIANNTLDQLNEEALREVE  101
             T GIP+G+G+IV+SFVL G+Y + AN   D+LN E L EV+
Sbjct  61   VTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ  102



Lambda      K        H        a         alpha
   0.328    0.143    0.428    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 16720


  Database: 669fb605f3cc308acddc66210950581a.SwissProt.fasta
    Posted date:  May 19, 2024  4:44 AM
  Number of letters in database: 208
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40