BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 09e47e3d1d7ba1d067722d0a5245631a.SwissProt.fasta
           4 sequences; 442 total letters



Query= ACIAD3453

Length=115
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P0ACX2 Inner membrane protein YdgC [Shigella flexneri]                112     8e-38
P0ACX0 Inner membrane protein YdgC [Escherichia coli (strain K12)]    112     8e-38
P0ACX1 Inner membrane protein YdgC [Escherichia coli O157:H7]         112     8e-38
P52112 Membrane protein GlpM [Pseudomonas aeruginosa (strain ATCC...  107     7e-36


>P0ACX2 Inner membrane protein YdgC [Shigella flexneri]
Length=111

 Score = 112 bits (279),  Expect = 8e-38
 Identities = 55/106 (52%), Positives = 71/106 (67%), Gaps = 0/106 (0%)

Query  4    GLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALF  63
            GL +K  LGA VVLLI +L+K+K +YIAGL+PLFPTFALIAH IV  ++G EALR T +F
Sbjct  2    GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF  61

Query  64   GLWSLIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGW  109
             +WS+IPY VYL  ++YF   + +      +   W I A  LI  W
Sbjct  62   SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW  107


 Score = 15.4 bits (28),  Expect = 0.72
 Identities = 6/27 (22%), Positives = 14/27 (52%), Gaps = 0/27 (0%)

Query  87   IGLCLTVATLTWVIVAAGLIYGWNSYF  113
            +GL +  A    V++  G++    +Y+
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYY  27


 Score = 13.1 bits (22),  Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (44%), Gaps = 0/32 (0%)

Query  75   LGMVYYFANRLPIGLCLTVATLTWVIVAAGLI  106
            +G+V   A    + L + V   T     AGLI
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYYIAGLI  32


>P0ACX0 Inner membrane protein YdgC [Escherichia coli (strain 
K12)]
Length=111

 Score = 112 bits (279),  Expect = 8e-38
 Identities = 55/106 (52%), Positives = 71/106 (67%), Gaps = 0/106 (0%)

Query  4    GLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALF  63
            GL +K  LGA VVLLI +L+K+K +YIAGL+PLFPTFALIAH IV  ++G EALR T +F
Sbjct  2    GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF  61

Query  64   GLWSLIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGW  109
             +WS+IPY VYL  ++YF   + +      +   W I A  LI  W
Sbjct  62   SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW  107


 Score = 15.4 bits (28),  Expect = 0.72
 Identities = 6/27 (22%), Positives = 14/27 (52%), Gaps = 0/27 (0%)

Query  87   IGLCLTVATLTWVIVAAGLIYGWNSYF  113
            +GL +  A    V++  G++    +Y+
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYY  27


 Score = 13.1 bits (22),  Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (44%), Gaps = 0/32 (0%)

Query  75   LGMVYYFANRLPIGLCLTVATLTWVIVAAGLI  106
            +G+V   A    + L + V   T     AGLI
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYYIAGLI  32


>P0ACX1 Inner membrane protein YdgC [Escherichia coli O157:H7]
Length=111

 Score = 112 bits (279),  Expect = 8e-38
 Identities = 55/106 (52%), Positives = 71/106 (67%), Gaps = 0/106 (0%)

Query  4    GLFLKCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALF  63
            GL +K  LGA VVLLI +L+K+K +YIAGL+PLFPTFALIAH IV  ++G EALR T +F
Sbjct  2    GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF  61

Query  64   GLWSLIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGW  109
             +WS+IPY VYL  ++YF   + +      +   W I A  LI  W
Sbjct  62   SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW  107


 Score = 15.4 bits (28),  Expect = 0.72
 Identities = 6/27 (22%), Positives = 14/27 (52%), Gaps = 0/27 (0%)

Query  87   IGLCLTVATLTWVIVAAGLIYGWNSYF  113
            +GL +  A    V++  G++    +Y+
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYY  27


 Score = 13.1 bits (22),  Expect = 4.5
 Identities = 10/32 (31%), Positives = 14/32 (44%), Gaps = 0/32 (0%)

Query  75   LGMVYYFANRLPIGLCLTVATLTWVIVAAGLI  106
            +G+V   A    + L + V   T     AGLI
Sbjct  1    MGLVIKAALGALVVLLIGVLAKTKNYYIAGLI  32


>P52112 Membrane protein GlpM [Pseudomonas aeruginosa (strain 
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 
/ 1C / PRS 101 / PAO1)]
Length=109

 Score = 107 bits (266),  Expect = 7e-36
 Identities = 50/102 (49%), Positives = 71/102 (70%), Gaps = 0/102 (0%)

Query  8    KCTLGAAVVLLISILSKSKTFYIAGLVPLFPTFALIAHVIVFGQQGAEALRKTALFGLWS  67
            K  +GAAVV+L+++LSK++ +YIAGLVPLFPTFALIAH IV   +  + L+ T +FG+WS
Sbjct  3    KALIGAAVVVLLAVLSKTRNYYIAGLVPLFPTFALIAHYIVGKGRSLDDLKTTIVFGMWS  62

Query  68   LIPYAVYLGMVYYFANRLPIGLCLTVATLTWVIVAAGLIYGW  109
            +IPY VYL  +Y    R  +   L +A L W++ A+ L+  W
Sbjct  63   IIPYFVYLAALYLLVERFRLETSLALAALAWLVAASVLVGLW  104



Lambda      K        H        a         alpha
   0.337    0.149    0.485    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 33652


  Database: 09e47e3d1d7ba1d067722d0a5245631a.SwissProt.fasta
    Posted date:  May 20, 2024  3:00 AM
  Number of letters in database: 442
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40