BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 619a21269cd601f16bf202ba994d80c9.SwissProt.fasta
           1 sequences; 257 total letters



Query= ACIAD3451

Length=361
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

O34447 Uncharacterized membrane protein YceF [Bacillus subtilis (...  53.5    9e-13


>O34447 Uncharacterized membrane protein YceF [Bacillus subtilis 
(strain 168)]
Length=257

 Score = 53.5 bits (127),  Expect = 9e-13
 Identities = 45/160 (28%), Positives = 81/160 (51%), Gaps = 18/160 (11%)

Query  204  VYIGVQVLSHLLGGEPEIDENGNAIGHDGSGASTGVIKAGFGGF----LYLEVLDASFSF  259
            +Y+   V+ H   GE E +        DG   ++ +++  FG F    + +E++D +FS 
Sbjct  100  LYLAWLVIKHFWIGEKEEEA-------DGMKKNSWMVRT-FGIFWATVISVELMDLAFSV  151

Query  260  DGVIGAFAITSDVVIIMLGLAIGAMFVRSMT-VYLVEKGTLDAYIYLEHGAHYAIGALAF  318
            D ++ AFA++  V ++++G  +G + +R++  V+LV    +D    LE+ A   IG +A 
Sbjct  152  DSILAAFAVSEKVWVLLIGGMLGILMMRTVAKVFLV---LIDKIPELENTAFVLIGIIAL  208

Query  319  IMLASGTGVHVPEVVTGLIGVAFIVWAVLASIQYSKHQEQ  358
             M  S     +P  V  +I +A   +AV   I Y   Q+Q
Sbjct  209  KMAGSAFHYEMPHSVFFIIIIA--AFAVTLIIHYINKQKQ  246


 Score = 25.4 bits (54),  Expect = 0.001
 Identities = 52/236 (22%), Positives = 89/236 (38%), Gaps = 46/236 (19%)

Query  44   LAVMEVSLSFDNAVVNASVLRGWDHFWKMLFLTVGILIAVFGMRLIFPVAIVAVTADMGM  103
            L V+E  LS DNA+V A +++      +   LT G L   +  R IF          +GM
Sbjct  36   LVVLEGLLSADNALVLAVMVKHLPEKQRKKALTYG-LFGAYIFRFIF--------IGLGM  86

Query  104  IEVAKMALNDPKNYSERLMQHHAEIAAFGGTFLLMVFLNFFF--------DDGKDTHWF-  154
                             L+     I   G  +L  + +  F+        D  K   W  
Sbjct  87   -----------------LLIKFWWIKVLGALYLAWLVIKHFWIGEKEEEADGMKKNSWMV  129

Query  155  KWIEAKLANLANIPAMSVFVALVAMLIMAAYVSDDKRLVVTMAGIWGLVVYIGV-QVLSH  213
            +      A + ++  M   +A     I+AA+   +K  V+ + G+ G+++   V +V   
Sbjct  130  RTFGIFWATVISVELMD--LAFSVDSILAAFAVSEKVWVLLIGGMLGILMMRTVAKVFLV  187

Query  214  LLGGEPEIDENGNAIGHDGSGASTGVIKAGFGGFLYLEVLDASFSFDGVIGAFAIT  269
            L+   PE++     +         G+I     G  +   +  S  F  +I AFA+T
Sbjct  188  LIDKIPELENTAFVL--------IGIIALKMAGSAFHYEMPHSVFFIIIIAAFAVT  235



Lambda      K        H        a         alpha
   0.329    0.142    0.431    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 76820


  Database: 619a21269cd601f16bf202ba994d80c9.SwissProt.fasta
    Posted date:  May 30, 2024  5:27 PM
  Number of letters in database: 257
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40