BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 58cefab0ae54a14b7eaed9038c5b1102.SwissProt.fasta
5 sequences; 2,264 total letters
Query= ACIAD3392
Length=421
Score E
Sequences producing significant alignments: (Bits) Value
Q9K1M2 Putative outer membrane protein NMB0088 [Neisseria meningi... 88.2 1e-22
P10641 Outer membrane protein P1 [Haemophilus influenzae] 75.5 2e-18
P43838 Outer membrane protein P1 [Haemophilus influenzae (strain ... 70.5 8e-17
P80603 47 kDa outer membrane protein [Pasteurella multocida (stra... 47.8 1e-09
H8WEC1 Alkane uptake protein A [Marinobacter nauticus (strain ATC... 40.0 4e-07
>Q9K1M2 Putative outer membrane protein NMB0088 [Neisseria meningitidis
serogroup B (strain MC58)]
Length=466
Score = 88.2 bits (217), Expect = 1e-22
Identities = 116/471 (25%), Positives = 179/471 (38%), Gaps = 81/471 (17%)
Query 13 LGGLSVLSSAHATTGYFMHGYGVKVQGQAGTAIAQFNDALTIANNPSGLVWLD-SRIDLG 71
LG +S HA+ GY V Q A A A+ DA TI NP+GL LD S+I +
Sbjct 13 LGTAFAAASVHAS-GYHFGTQSVNAQSTANAAAAEAADASTIFYNPAGLTKLDSSQISVN 71
Query 72 ATVFKP----ERRATIQDNQFGANGDYDGNGREYFVLPELAINKKVNDQVALGLAIYGNG 127
A + P E + G G + V P + KVND + +GL +Y
Sbjct 72 ANIVLPSIHYEADSATDFTGLPVQGSKSGKITKTTVAPHIYGAYKVNDNLTVGLGVYVPF 131
Query 128 GMNTSYKQNPFAAFGNTGTAGVNLSQIFISPAVAWRYTDSQSIGVAANFLYQRFEAKGIQ 187
G T Y+++ N G L+ I + P AW+ D S G A + Q A+ ++
Sbjct 132 GSATEYEKDSVLRH-NINKLG--LTSIAVEPVAAWKLNDRHSFG--AGIIAQHTSAE-LR 185
Query 188 GFAPFSIDPQ------------------------HLSDQGGDSSKGVGFRVGWSGHLNDQ 223
+A + I + H +G D G G+++ W +ND+
Sbjct 186 KYADWGIKSKAEILTAKPPKPNGVAEAAKIQADGHADVKGSD--WGFGYQLAWMWDINDR 243
Query 224 ITLGLNYSSKIN-------------ADRFDKYRGLFAQGG---------DFDVPESYGLG 261
+G+NY SK++ A + + A G PES +
Sbjct 244 ARVGVNYRSKVSHTLKGDAEWAADGAAAKAMWSTMLAANGYTANEKARVKIVTPESLSVH 303
Query 262 VNIQATPKLNIAADVQRINYSDVDAIGHDF-SVAALQAGHLFGSELGPGFGWDDINIYKI 320
+ + K ++ DV +S D F + G + + P + N YK+
Sbjct 304 GMYKVSDKADLFGDVTWTRHSRFDKAELVFEKEKTVVKGKSDRTTITPNWR----NTYKV 359
Query 321 --GASYQLAPQLTVRAGYSYNDQPISKDQTFLNILAPGVIQHHVSVGATWQIDPKQELSF 378
G SYQ++ L +RAG +++ P+ +N L G + S G + I +
Sbjct 360 GFGGSYQISEPLQLRAGIAFDKSPVRNADYRMNSLPDG-NRIWFSAGMKYHIGKNHVVDA 418
Query 379 AYTYGVKHKLKGDQSIPAAFGGGN-------TNLEMDQH--ILGFSYGLKF 420
AYT H D S A GN ++ H I+G Y KF
Sbjct 419 AYT----HIHINDTSYRTAKASGNDVDSKGASSARFKNHADIIGLQYTYKF 465
>P10641 Outer membrane protein P1 [Haemophilus influenzae]
Length=459
Score = 75.5 bits (184), Expect = 2e-18
Identities = 102/428 (24%), Positives = 168/428 (39%), Gaps = 76/428 (18%)
Query 7 TVISLGLGGLSVLSSAHATTGYFMHGYGVKVQGQAGTAIAQFNDALTIANNPS------- 59
T + L GG + ++A G G G+A A ++A +A NP+
Sbjct 11 TAMLLAAGGAN--AAAFQLAEVSTSGLGRAYAGEAAIA----DNASVVATNPALMSLFKT 64
Query 60 -----GLVWLDSRIDLGATVFKPERRATIQDNQFGANGDYDGNGREYFVLP-----ELAI 109
G V++DSRI++ V A I NQ G DG+ + V+P L
Sbjct 65 AQFSTGGVYIDSRINMNGDVTS---YAQIITNQIGMKAIKDGSASQRNVVPGAFVPNLYF 121
Query 110 NKKVNDQVALGLAIYGNGGMNTSYKQNPFAA-FGNTGTAGVNLSQIFISPAVAWRYTDSQ 168
VND+ ALG + N G+ + Y + A FG +LS I ++ + A+R T+
Sbjct 122 VAPVNDKFALGAGMNVNFGLKSEYDDSYDAGVFGGK----TDLSAINLNLSGAYRVTEGL 177
Query 169 SIGVAANFLYQRFEAKGIQGFAPFSIDPQHLSDQGGDSSK-------------------- 208
S+G+ N +Y + + + G S+ ++ +
Sbjct 178 SLGLGVNAVYAKAQVERNAGLIADSVKDNQITSALSTQQEPFRDLKKYLPSKDKSVVSLQ 237
Query 209 -----GVGFRVGWSGHLNDQITLGLNYSSKINADRFDK-----YRGLFAQGG----DFDV 254
G G+ G N+ +GL Y SK++ D D+ + +G F +
Sbjct 238 DRAAWGFGWNAGVMYQFNEANRIGLAYHSKVDIDFADRTATSLEANVIKEGKKGNLTFTL 297
Query 255 PESYGLGVNIQATPKLNIAADVQRINYSDVDAIGHDFSVAALQAGHLFGSELGPGFGWDD 314
P+ L Q T KL + + ++S + + F F EL + +
Sbjct 298 PDYLELSGFHQLTDKLAVHYSYKYTHWSRLTKLHASFE----DGKKAFDKEL----QYSN 349
Query 315 INIYKIGASYQLAPQLTVRAGYSYNDQPISKDQTFLNILAPGVIQHHVSVGATWQIDPKQ 374
+ +GASY L +LT+RAG +Y DQ S+ I P + S+GAT++ P
Sbjct 350 NSRVALGASYNLYEKLTLRAGIAY-DQAASRHHRSAAI--PDTDRTWYSLGATYKFTPNL 406
Query 375 ELSFAYTY 382
+ Y Y
Sbjct 407 SVDLGYAY 414
>P43838 Outer membrane protein P1 [Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=459
Score = 70.5 bits (171), Expect = 8e-17
Identities = 104/427 (24%), Positives = 169/427 (40%), Gaps = 74/427 (17%)
Query 7 TVISLGLGGLSVLSSAHATTGYFMHGYGVKVQGQAGTAIAQFNDALTIANNPS------- 59
T + L GG + ++A G G G+A A ++A +A NP+
Sbjct 11 TAMLLAAGGAN--AAAFQLAEVSTSGLGRAYAGEAAIA----DNASVVATNPALMSLFKT 64
Query 60 -----GLVWLDSRIDLGATVFKPERRATIQDNQFGANGDYDGNGREYFVLP-----ELAI 109
G V++DSRI++ V ATI + G G+ V+P L
Sbjct 65 AQFSTGGVYVDSRINMNGDVTS---HATIITSSSGIKAIEGGSASARNVVPGAFVPNLYF 121
Query 110 NKKVNDQVALGLAIYGNGGMNTSYKQNPFAAFGNTGTAGVNLSQIFISPAVAWRYTDSQS 169
VND+ ALG + N G+ + Y + A T +LS I ++ + A+R T+ S
Sbjct 122 VAPVNDKFALGAGMNVNFGLKSEYDDSYDAGIFGGKT---DLSAINLNLSGAYRVTEGLS 178
Query 170 IGVAANFLYQRFEAKGIQGFAPFSI-------------DPQHLSDQ---GGDSSK----- 208
+G+ N +Y + + + G S+ +P D+ D+S
Sbjct 179 LGLGVNAVYAKAQVERNAGIIADSVKDNQVKTALTVQQEPLKFLDKYLPSKDTSVVSLQD 238
Query 209 ----GVGFRVGWSGHLNDQITLGLNYSSKINADRFDKYRGLF-------AQGGDFDV--P 255
G G+ G N+ +GL Y SK++ D D+ + GD + P
Sbjct 239 RAAWGFGWNAGVMYQFNEANRIGLAYHSKVDIDFTDRTATSVEANVIKAGKKGDLTLTLP 298
Query 256 ESYGLGVNIQATPKLNIAADVQRINYSDVDAIGHDFSVAALQAGHLFGSELGPGFGWDDI 315
+ L Q T KL + + ++S + + F F EL + +
Sbjct 299 DYLELSGFHQLTDKLAVHYSYKYTHWSRLTKLNASFE----DGKKAFDKELQ----YSNN 350
Query 316 NIYKIGASYQLAPQLTVRAGYSYNDQPISKDQTFLNILAPGVIQHHVSVGATWQIDPKQE 375
+ +GASY L +LT+RAG +Y DQ S+ Q I P + S+GAT++ P
Sbjct 351 SRVALGASYNLDEKLTLRAGIAY-DQAASRHQRSAAI--PDTDRTWYSLGATYKFTPNLS 407
Query 376 LSFAYTY 382
+ Y Y
Sbjct 408 VDLGYAY 414
>P80603 47 kDa outer membrane protein [Pasteurella multocida (strain
Pm70)]
Length=428
Score = 47.8 bits (112), Expect = 1e-09
Identities = 88/394 (22%), Positives = 158/394 (40%), Gaps = 50/394 (13%)
Query 32 GYGVKVQGQAGTAIAQFNDALTIANNPSGLVWLDS-RIDLGATVFKPERRATIQDNQFGA 90
G G G+A A ++A +A NP+ + L I +GA P T F
Sbjct 37 GLGRAYAGEAAIA----DNAAVVATNPALMSLLKQPEISVGAIYVDPNINLTSPMPGFAY 92
Query 91 NGDYDGNGREYFVLPELAINKKVNDQVALGLAIYGNGGMNTSYKQNPFAAF--GNTGTAG 148
N ++P + +N++ A+G + N G+ T + F G T
Sbjct 93 K-----NIAPNALVPTVYGVYPINEKFAVGGGLNVNYGLATEFDDKYAGGFLGGKTDLTA 147
Query 149 VNLSQIFISPAVAWRYTDSQSIGVAANFLYQRFEAKGIQGFA---------PFSIDPQH- 198
+N + + A+R T+ S+G+ N ++ + + + G A + P +
Sbjct 148 INFNL-----SGAYRVTEKFSVGLGLNAVHAKAKLERYAGVALKLKVPNVAQLAALPANT 202
Query 199 -LSDQGGDSSKGVGFRVGWSGHLNDQITLGLNYSSKINADRFDKYRGLFAQGGDFDVPES 257
+S GD G G+ G N++ +G+ Y S+++ + +Y F + ++
Sbjct 203 VISKLQGDKW-GFGWNAGLVYEFNERNRIGIAYHSQVDINFKGQYSNHFPLAAAA-LLQT 260
Query 258 YGL----GVNIQATPKLNIAADVQRINY---SDVDAIGHDFSVAA------LQAGHLFGS 304
G+ G I T L + A + Y +D A+ + + L+A G
Sbjct 261 KGITATGGKEIPGTLHLPLPAYWEISGYHKMTDRFAMHYSYKYTQWSKFKELRAKGTDGK 320
Query 305 EL-GPGFGWDDINIYKIGASYQLAPQLTVRAGYSYNDQPISKDQTFLNILAPGVIQHHVS 363
L + D + +GASY + LTVR G +Y++ + T I P + S
Sbjct 321 TLFSKTEEFRDSSRIALGASYDVTDALTVRTGIAYDESAADEHNT---ISIPDTDRTWFS 377
Query 364 VGATWQIDPKQEL--SFAYTYGVKHKLKGDQSIP 395
VGAT++ P + FA+ G K+ K ++ +P
Sbjct 378 VGATYRFTPNVSIDAGFAHLKGKKNTFK-EEGVP 410
>H8WEC1 Alkane uptake protein A [Marinobacter nauticus (strain
ATCC 49840 / DSM 8798 / CIP 103578 / SP17)]
Length=452
Score = 40.0 bits (92), Expect = 4e-07
Identities = 42/173 (24%), Positives = 74/173 (43%), Gaps = 16/173 (9%)
Query 255 PESYGLGVNIQATPKLNIAADVQRINYSDVDAIGHDFSVAALQAGHLFGSELGPGFGWDD 314
PE+ +G I +++ N+S+++ +FS +++ S G G+DD
Sbjct 289 PETIAIGTQYSGDG-WRIGGSIEQQNWSELE---DEFSGDSIKDQGSVAS--GNRIGFDD 342
Query 315 INIYKIGASYQLAPQLTVRAGYSYNDQPISKDQT-FLNILAPGVIQHHVSVGATWQ---- 369
I I ++GA YQL VR G +Y + P+ + LN L + + + AT+
Sbjct 343 ILIPRLGAEYQLNKNFAVRGGVAYEESPLKTTRNPELNYLDTDKLVVGLGISATYDRTRL 402
Query 370 IDPKQELSFAYTYGVKHKLKGDQSIPAAFGGGNTNL--EMDQHILGFSYGLKF 420
+ L Y Y +L+ + G T++ + D H+ S LKF
Sbjct 403 LAYPVRLDLGYQY---QQLQERDFTVVDYDGDETSVTADGDIHVFSGSITLKF 452
Score = 19.6 bits (39), Expect = 0.94
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query 50 DALTIANNPSGLVWLDSRIDLGATVFKPE 78
+ L + PS L + IDLG+T F PE
Sbjct 211 ERLAVNAEPSLKTILGTNIDLGST-FCPE 238
Score = 18.1 bits (35), Expect = 2.8
Identities = 9/26 (35%), Positives = 14/26 (54%), Gaps = 0/26 (0%)
Query 345 KDQTFLNILAPGVIQHHVSVGATWQI 370
K+ FLNI I +S GA+ ++
Sbjct 165 KEPLFLNIGGATPIWRGISAGASVRV 190
Lambda K H a alpha
0.320 0.138 0.419 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 774522
Database: 58cefab0ae54a14b7eaed9038c5b1102.SwissProt.fasta
Posted date: May 30, 2024 8:55 PM
Number of letters in database: 2,264
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
