BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a3d8b02483ca9fb374598b8c276f7c2a.SwissProt.fasta
15 sequences; 8,769 total letters
Query= ACIAD3366
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
G3XD46 Peptidoglycan D,D-transpeptidase FtsI [Pseudomonas aerugin... 441 2e-151
P0AD69 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli O1... 418 1e-142
P0AD68 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli (s... 418 1e-142
Q9I1K1 Probable peptidoglycan D,D-transpeptidase PbpC [Pseudomona... 380 3e-128
P57317 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola... 379 2e-127
P45059 Peptidoglycan D,D-transpeptidase FtsI [Haemophilus influen... 373 7e-125
O85297 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola... 353 8e-118
P08149 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 353 2e-117
P0A0U8 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 351 9e-117
P0A0U9 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 351 9e-117
Q89AQ0 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola... 318 5e-104
P16873 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria ... 280 1e-91
A0R022 Penicillin-binding protein PbpB [Mycolicibacterium smegmat... 252 4e-78
L0T911 Penicillin-binding protein PbpB [Mycobacterium tuberculosi... 228 7e-69
Q03524 Stage V sporulation protein D [Bacillus subtilis (strain 1... 213 6e-64
>G3XD46 Peptidoglycan D,D-transpeptidase FtsI [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=579
Score = 441 bits (1133), Expect = 2e-151
Identities = 230/574 (40%), Positives = 363/574 (63%), Gaps = 30/574 (5%)
Query 36 WRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVP 95
WRF ++ G++L ++ R + VI+ DFL+ + +A +R I A RG+I+DR+G P
Sbjct 13 WRFCVIVGLLLAMVGAIVWRIVDLHVIDHDFLKGQGDARSVRHIAIPAHRGLITDRNGEP 72
Query 96 LAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGM 155
LA+STPV + +P++ K+ + +LA A+G
Sbjct 73 LAVSTPVTTLWANPKELMTAKERWP---------------------------QLAAALGQ 105
Query 156 DRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQII 215
D ++ ++ L + + P+Q + ++ GVY+ + ++R+YP + A +
Sbjct 106 DTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAV 165
Query 216 GLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIREGEPGENITLSIDS 275
G T+ + G EG+E+ ++ L+GV G+++V++D+RG +K +V + +PG+ + LSID
Sbjct 166 GFTDVDDRGREGIELAFDEWLAGVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDL 225
Query 276 RLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNR 335
RLQY+ +REL A + N A++ S + +DVKTGEILAM + P+YNPN++ L AMRNR
Sbjct 226 RLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPA-AMRNR 284
Query 336 GAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRD-THNYGALTLTG 394
ID+FEPGST+KPF++SAAL SG++ P+ IV+ PG++++G +TIRD + N L LTG
Sbjct 285 AMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTG 344
Query 395 VIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGT 454
+++KSSNVG +KIA + +++ + ++VG GQ + + FPGE G + + K ++ T
Sbjct 345 ILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETAT 404
Query 455 MAYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGEQVLNPKIADQVLSMLEQV 514
+AYGYGL+ T +QLA YA LAN G +PLS+ ++D P G QV++P++A V ML+QV
Sbjct 405 LAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQV 464
Query 515 TMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPVSDPRLAMIIVV 574
G +A +PGY GK+GTA K+ KGY +N YR+LFAG AP +DPR+AM++V+
Sbjct 465 VEAQGGVFRAQVPGYHAAGKSGTARKVSVGTKGYRENAYRSLFAGFAPATDPRIAMVVVI 524
Query 575 ENP-QGRYYGGLVAAPVFTRIMQESLRLMNVPLD 607
+ P + Y+GGLV+APVF+++M +LRLMNVP D
Sbjct 525 DEPSKAGYFGGLVSAPVFSKVMAGALRLMNVPPD 558
>P0AD69 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli
O157:H7]
Length=588
Score = 418 bits (1075), Expect = 1e-142
Identities = 240/595 (40%), Positives = 346/595 (58%), Gaps = 31/595 (5%)
Query 15 IKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANAN 74
+K K Q+ ++ F WRF LL G +LL L+ R ++QVI+ D L + +
Sbjct 1 MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR 60
Query 75 ILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRK 134
LR +++ RG+I+DR G PLA+S PV + DP++ + IS R
Sbjct 61 SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDA----GGISVGDR------- 109
Query 135 LKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQG 194
LA+A+ + +L ++ A P+ R++ L +++ P AD I K G
Sbjct 110 -----------WKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPG 158
Query 195 VYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRL 254
++ + +RYYP + A +IG TN + G+EG+E +K L+G GE+ V +D+ G +
Sbjct 159 IHLREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI 218
Query 255 K-ISEVIREGEPGENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMA 313
+ IS + + N+ LSID RLQ ++YREL A N A S SA+ VDV TGE+LAMA
Sbjct 219 EDISST--DSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA 276
Query 314 SWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGS 373
+ PSYNPN+ +G + K+AMRNR D+FEPGST+KP V AL+ G N+++NT P
Sbjct 277 NSPSYNPNNLSG-TPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIP-- 333
Query 374 MRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHF 433
R+ H I+D Y LTLTGV+ KSSNVG +K+AL++P AL Y R G G+ + +
Sbjct 334 YRINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGL 393
Query 434 PGESGGLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPP 493
GE GL + + + T ++GYGL T LQLA+ YA + ++G+ PLS+ K+D P
Sbjct 394 VGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPV 453
Query 494 KGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQY 553
GE+V I V+ M+E V +PGG +A I GYR+ KTGTA K+ PDG+ N+Y
Sbjct 454 PGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI--NKY 511
Query 554 RALFAGVAPVSDPRLAMIIVVENPQ-GRYYGGLVAAPVFTRIMQESLRLMNVPLD 607
A AGVAP S PR A+++V+ +PQ G+YYGG V+APVF IM LR MN+ D
Sbjct 512 IAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD 566
>P0AD68 Peptidoglycan D,D-transpeptidase FtsI [Escherichia coli
(strain K12)]
Length=588
Score = 418 bits (1075), Expect = 1e-142
Identities = 240/595 (40%), Positives = 346/595 (58%), Gaps = 31/595 (5%)
Query 15 IKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANAN 74
+K K Q+ ++ F WRF LL G +LL L+ R ++QVI+ D L + +
Sbjct 1 MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAWLQVISPDMLVKEGDMR 60
Query 75 ILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRK 134
LR +++ RG+I+DR G PLA+S PV + DP++ + IS R
Sbjct 61 SLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDA----GGISVGDR------- 109
Query 135 LKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQG 194
LA+A+ + +L ++ A P+ R++ L +++ P AD I K G
Sbjct 110 -----------WKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPG 158
Query 195 VYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRL 254
++ + +RYYP + A +IG TN + G+EG+E +K L+G GE+ V +D+ G +
Sbjct 159 IHLREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI 218
Query 255 K-ISEVIREGEPGENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMA 313
+ IS + + N+ LSID RLQ ++YREL A N A S SA+ VDV TGE+LAMA
Sbjct 219 EDISST--DSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA 276
Query 314 SWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGS 373
+ PSYNPN+ +G + K+AMRNR D+FEPGST+KP V AL+ G N+++NT P
Sbjct 277 NSPSYNPNNLSG-TPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIP-- 333
Query 374 MRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHF 433
R+ H I+D Y LTLTGV+ KSSNVG +K+AL++P AL Y R G G+ + +
Sbjct 334 YRINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLGL 393
Query 434 PGESGGLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPP 493
GE GL + + + T ++GYGL T LQLA+ YA + ++G+ PLS+ K+D P
Sbjct 394 VGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVDPPV 453
Query 494 KGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQY 553
GE+V I V+ M+E V +PGG +A I GYR+ KTGTA K+ PDG+ N+Y
Sbjct 454 PGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI--NKY 511
Query 554 RALFAGVAPVSDPRLAMIIVVENPQ-GRYYGGLVAAPVFTRIMQESLRLMNVPLD 607
A AGVAP S PR A+++V+ +PQ G+YYGG V+APVF IM LR MN+ D
Sbjct 512 IAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD 566
>Q9I1K1 Probable peptidoglycan D,D-transpeptidase PbpC [Pseudomonas
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116
/ JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=565
Score = 380 bits (977), Expect = 3e-128
Identities = 217/580 (37%), Positives = 340/580 (59%), Gaps = 31/580 (5%)
Query 36 WRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVP 95
+RF L+ + +L + + R Y+QV + +FL ++ + +R I RG+I+DR+G P
Sbjct 8 YRFILVVTLFVLASLAVSGRLVYLQVHDHEFLADQGDLRSIRDLPIPVTRGMITDRNGEP 67
Query 96 LAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGM 155
LA+ST V + +PR+ ++A L + P LA A+
Sbjct 68 LAVSTEVASIWCNPRE----------MAAHLDEVPR-----------------LAGALHR 100
Query 156 DRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQII 215
A L Q+ A P R+L L++ + P +A ++ GV+ K YKR+YP + AQ+I
Sbjct 101 PAAALLAQLQANPNKRFLYLERGLSPIEASEVMALGITGVHQIKEYKRFYPSSELTAQLI 160
Query 216 GLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIREGEPGENITLSIDS 275
GL N +G G EG E+ N LSG DG ++V + RG+ + +V++ + +++ LSID
Sbjct 161 GLVNIDGRGQEGTELGFNDWLSGKDGVREVAINPRGSLVNSIKVLKTPKASQDVALSIDL 220
Query 276 RLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNR 335
RLQ+I Y+ L A + A S SA+ V+ K+G+ILAMA++PSYNPN++ + MRNR
Sbjct 221 RLQFIAYKALEKAVLKFGAHSGSAVLVNPKSGQILAMANFPSYNPNNRASFAPA-FMRNR 279
Query 336 GAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGALTLTGV 395
D FEPGS +KPF++SAAL SG++ N+ V+ +PG M + HTI D LT+TGV
Sbjct 280 TLTDTFEPGSVIKPFSMSAALASGKFDENSQVSVAPGWMTIDGHTIHDVARRDVLTMTGV 339
Query 396 IVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGTM 455
++ SSN+G +K+AL + + RVGFG ++ FPGE+ G + + K + +M
Sbjct 340 LINSSNIGMSKVALQIGPKPILEQLGRVGFGAPLSLGFPGENPGYLPFHEKWSNIATASM 399
Query 456 AYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGEQVLNPKIADQVLSMLEQVT 515
++GY L +LAQ Y++ AN G +PLSL + + + Q ++P+IA ++ +ML+ V
Sbjct 400 SFGYSLAVNTAELAQAYSVFANDGKLVPLSLLRDNPQNQVRQAMDPQIARRIRAMLQTVV 459
Query 516 MPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPVSDPRLAMIIVVE 575
+A +PGY V GK+GTA K G+GYA YR+LF G+AP SDP+L + ++++
Sbjct 460 EDPKGVVRARVPGYHVAGKSGTARK--ASGRGYADKSYRSLFVGMAPASDPQLVLAVMID 517
Query 576 NP-QGRYYGGLVAAPVFTRIMQESLRLMNVPLDKPLDTPS 614
+P + Y+GGLV+AP F+ IM SLR + +P D D+P+
Sbjct 518 SPTRIGYFGGLVSAPTFSDIMAGSLRALAIPPDNLQDSPA 557
>P57317 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola
subsp. Acyrthosiphon pisum (strain APS)]
Length=579
Score = 379 bits (973), Expect = 2e-127
Identities = 209/590 (35%), Positives = 349/590 (59%), Gaps = 29/590 (5%)
Query 19 RKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRT 78
+K++ + + + WRF+LL+G + L +L R ++Q+I+ + L + + LRT
Sbjct 3 KKEKNRFLKSKQINYINWRFFLLYGFIFLSLFILTLRVIFLQIISSNRLITEGDRRTLRT 62
Query 79 EKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQ 138
+ + + RG I DR G PLA++ V + DP +TK N + KR
Sbjct 63 QSLLSTRGAIKDRRGYPLAVTVLVNAICADPSVILKTK--------------NIKNHKRW 108
Query 139 LPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTE 198
L++ + + ++ ++ + +S+++ L ++I P+ ++ I K G++
Sbjct 109 --------QALSEILSIPLKKMFLRINSHKKSKFIYLARQINPEISEYIKKLQLPGIFLL 160
Query 199 KNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISE 258
+ KRYYP + +AQ++G TN +G+G+EG+E + L+G G++K+ +D +G+ ++
Sbjct 161 EESKRYYPFKEISAQLVGFTNIDGIGIEGIEKSFDLLLTGKPGKRKIRQDNKGHVIEKIS 220
Query 259 VIREGEPGENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSY 318
++ + N+ LSID++LQ I+Y EL + + S +AI +++K+GE+LAMA+ PSY
Sbjct 221 LVHK-RASNNLNLSIDTKLQTIVYNELQEGVKKSQSDSGTAILINIKSGEVLAMANSPSY 279
Query 319 NPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGW 378
NPN+ + K+ +RN+ D+FEPGST+KP + AL+ G N+I++T P ++
Sbjct 280 NPNNIRHIIQKN-VRNKAITDLFEPGSTVKPIVIIEALKLGIIQENSIIDTKPFLIQK-- 336
Query 379 HTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESG 438
H I+D + LT+TG++ KSSNVG +KIALS+P L Y + G G+ + + GE
Sbjct 337 HQIKDVSYHEKLTITGILQKSSNVGVSKIALSMPTLKLLDSYIKFGLGKPTQLGLIGEKH 396
Query 439 GLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGEQV 498
G P + + T+++GYGL T LQLA+ Y+ +A++G+ PLS+ K D P G+Q+
Sbjct 397 GFFPPKKRWSNLDKATLSFGYGLMVTPLQLARLYSTIASYGIYRPLSIIKTDRPTGGKQI 456
Query 499 LNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFA 558
PK +V++M+E V+ PGG QA + GYRV KTGTA K+ G+ +Y A A
Sbjct 457 FPPKYVKKVINMMESVSQPGGGGLQAAVRGYRVAVKTGTAKKVGIHGRYI--KKYTAYTA 514
Query 559 GVAPVSDPRLAMIIVVENPQG-RYYGGLVAAPVFTRIMQESLRLMNVPLD 607
G+AP SDPR ++II+++NPQG +YYGG V+APVF+ IM+ L+ MN+ D
Sbjct 515 GIAPASDPRFSLIIILDNPQGKKYYGGAVSAPVFSNIMKLILKKMNIKPD 564
>P45059 Peptidoglycan D,D-transpeptidase FtsI [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=610
Score = 373 bits (958), Expect = 7e-125
Identities = 228/609 (37%), Positives = 352/609 (58%), Gaps = 41/609 (7%)
Query 2 SKNTKACCMIDKRIKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQV 61
SK T + +KQ K Q + EK F R+ L ++LL L+ARA YVQ
Sbjct 13 SKKTIRKLTAPETVKQN--KPQKVFEK---CFMRGRYMLSTVLILLGLCALVARAAYVQS 67
Query 62 INKDFLQNKANANILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDD 121
IN D L N+A+ LR +++ ++RG I DR+G L++S P+ +V DP+ +
Sbjct 68 INADTLSNEADKRSLRKDEVLSVRGSILDRNGQLLSVSVPMSAIVADPKTMLK------- 120
Query 122 ISAELRKDPNNRKLKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPP 181
+ L DK + LA+ +GM +L K++ +S YL L +++
Sbjct 121 --------------ENSLADKE-RIAALAEELGMTENDLVKKIEKNSKSGYLYLARQVEL 165
Query 182 QQADLILKRNFQGVYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDG 241
+A+ I + +G+ E ++R+YP+ + A ++G T+ +G G+EG+E N L G DG
Sbjct 166 SKANYIRRLKIKGIILETEHRRFYPRVEEAAHVVGYTDIDGNGIEGIEKSFNSLLVGKDG 225
Query 242 EQKVIRDKRGNRL-KISEVIREGEPGENITLSIDSRLQYIMYRELTAAGVANNARSASAI 300
+ V +DKRGN + IS+ + +++TLSID +LQ ++YRE+ A NNA S +A+
Sbjct 226 SRTVRKDKRGNIVAHISD--EKKYDAQDVTLSIDEKLQSMVYREIKKAVSENNAESGTAV 283
Query 301 AVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQ 360
VDV+TGE+LAMA+ PSYNPN++ G+ + + MRNR D FEPGST+KPF V AL+ G
Sbjct 284 LVDVRTGEVLAMATAPSYNPNNRVGVKS-ELMRNRAITDTFEPGSTVKPFVVLTALQRGV 342
Query 361 YTPNTIVNTSPGSMRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFY 420
+ I++T+ S +L I D TL +++ SSN G +++AL +P AL Y
Sbjct 343 VKRDEIIDTT--SFKLSGKEIVDVAPRAQQTLDEILMNSSNRGVSRLALRMPPSALMETY 400
Query 421 RRVGFGQRSAVHFPGESGGLILPNSK-LTPSQIGTMAYGYGLNATILQLAQGYAMLANHG 479
+ G + + + GE G++ N K + T+AYGYG+ AT LQ+A+ YA L + G
Sbjct 401 QNAGLSKPTDLGLIGEQVGILNANRKRWADIERATVAYGYGITATPLQIARAYATLGSFG 460
Query 480 VKMPLSLRKLDEPPKGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAH 539
V PLS+ K+D P G++V + KI ++ +LE+V + +A + GYRVG KTGTA
Sbjct 461 VYRPLSITKVDPPVIGKRVFSEKITKDIVGILEKVAIKN---KRAMVEGYRVGVKTGTAR 517
Query 540 KLRPDGKGYAQNQYRALFAGVAPVSDPRLAMIIVVENPQ-GRYYGGLVAAPVFTRIMQES 598
K+ G+ N+Y A AG+AP+SDPR A+++++ +P+ G YYGG V+APVF+ IM +
Sbjct 518 KIE---NGHYVNKYVAFTAGIAPISDPRYALVVLINDPKAGEYYGGAVSAPVFSNIMGYA 574
Query 599 LRLMNVPLD 607
LR +P D
Sbjct 575 LRANAIPQD 583
>O85297 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg)]
Length=568
Score = 353 bits (907), Expect = 8e-118
Identities = 212/573 (37%), Positives = 326/573 (57%), Gaps = 29/573 (5%)
Query 36 WRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVP 95
WRF L +V L V+L R ++Q+IN L + + LR + + RG+I+DR G P
Sbjct 17 WRFVTLCSIVFLFLVILTLRIIFLQIINSKKLAYEGDRRTLRIQSVINRRGIINDRLGYP 76
Query 96 LAISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGM 155
LA++ PV V IDP T K +DI NN + K ++ L++L +
Sbjct 77 LAVAVPVNAVFIDPT--MITNK--NDIK-------NNIRWKALSEILSIPLNKLIFFINS 125
Query 156 DRAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQII 215
D+ +++ L ++I P+ D I GV+ + KRYYP AQ+I
Sbjct 126 DK-----------NIKFIYLARQINPEIGDYIKALKLPGVFLIEESKRYYPTGAIAAQLI 174
Query 216 GLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIREGEPGENITLSIDS 275
G+ N +G G+EG+E N L+G G++K+ +D +G ++ +I + N+ LSID
Sbjct 175 GINNIDGEGIEGIEKSFNSYLTGTPGKRKIRKDNQGQIIENESLINKSN-SNNLILSIDK 233
Query 276 RLQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNR 335
+LQ I+Y++L A N A AI ++++TGEILAMA+ PSYNPN+ + NK+ +RN+
Sbjct 234 KLQTIVYQKLNNAVNENQADFGIAILINIETGEILAMANSPSYNPNNMQYMINKN-LRNK 292
Query 336 GAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGALTLTGV 395
D+FEPGST+KP + AL+ G N+I+NT P ++ H I D + L +TG+
Sbjct 293 AITDIFEPGSTVKPIVIMEALKRGIIKKNSIINTKPYFIKK--HKITDVAYHEKLNITGI 350
Query 396 IVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGTM 455
+ KSSNVG +KIALS+ L Y + G GQ + + GE G + KL+ + T
Sbjct 351 LKKSSNVGVSKIALSMNTSELINSYIKFGLGQPTNLGLIGEQKGFLPKKKKLSDLEKATF 410
Query 456 AYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGEQVLNPKIADQVLSMLEQVT 515
++GYGL T LQLA+ Y ++ ++G+ PLS+ K+D P +++ + V+ M+E V
Sbjct 411 SFGYGLMITPLQLARLYTIIGSYGIYRPLSIIKIDHPLYEKRIFPKRYVKNVIHMMETVA 470
Query 516 MPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPVSDPRLAMIIVVE 575
PG +QA I GYRV KTGTA K+ GY +Y A AG+AP S+P+ ++ I+++
Sbjct 471 HPGEGGSQAAIKGYRVAIKTGTAKKV--GIHGYYIKKYIAYTAGIAPASNPKFSLTIIID 528
Query 576 NPQG-RYYGGLVAAPVFTRIMQESLRLMNVPLD 607
NP+G +YYGG V+APVF++IM+ L+ M + D
Sbjct 529 NPKGEKYYGGAVSAPVFSKIMKLVLKEMKIKPD 561
>P08149 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
gonorrhoeae]
Length=581
Score = 353 bits (906), Expect = 2e-117
Identities = 210/604 (35%), Positives = 341/604 (56%), Gaps = 36/604 (6%)
Query 10 MIDKRIKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQN 69
+I K ++ +KP + F L+ VL F LIAR Y+Q + +FL+
Sbjct 2 LIKSEYKPRMLPKEEQVKKPMTSNGRISFVLMAMAVL--FACLIARGLYLQTVTYNFLKE 59
Query 70 KANANILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKD 129
+ + I+RT+ + A RG +SDR+G LA+S P + P+D +++
Sbjct 60 QGDNRIVRTQALPATRGTVSDRNGAVLALSAPTESLFAVPKD--------------MKEM 105
Query 130 PNNRKLKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILK 189
P+ +L+R L EL D V +D L+ ++ + +S ++ +++++ P+ A+ +
Sbjct 106 PSAAQLER--------LSELVD-VPVD--VLRNKLEQKGKS-FIWIKRQLDPKVAEEVKA 153
Query 190 RNFQGVYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDK 249
+ EK KR+YP A +IG T+ +G G EGLE+ L L G DG + V+RD+
Sbjct 154 LGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLYGEDGAEVVLRDR 213
Query 250 RGNRLKISEVIREGEP--GENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTG 307
+GN + + R P G++I LS+D R+Q + Y EL A + A++ + + +D +TG
Sbjct 214 QGNIVDSLDSPRNKAPQNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTG 273
Query 308 EILAMASWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIV 367
EILA+A+ P+Y+PN + G ++ + RNR DM EPGS +KPF ++ AL++G+ N +
Sbjct 274 EILALANTPAYDPN-RPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERL 332
Query 368 NTSPGSMRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQ 427
NT P ++G +RDTH Y +L + G++ KSSNVG++K++ + + FY +G G
Sbjct 333 NTQP--YKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 428 RSAVHFPGESGGLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLR 487
R FPGE+ GL+ + P + TM++GYGL ++LQLA+ Y L + GV +PLS
Sbjct 391 RMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPLSFE 450
Query 488 KLDEPPKGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKG 547
K P+G+++ A +V +++ VT PGGT T + G+ VG KTGTA K +G+
Sbjct 451 KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKF-VNGR- 508
Query 548 YAQNQYRALFAGVAPVSDPRLAMIIVVENPQGR-YYGGLVAAPVFTRIMQESLRLMNVPL 606
YA N++ A F G AP +PR+ + + ++ P YYGG+VA P F +IM SL ++ +
Sbjct 509 YADNKHVATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGISP 568
Query 607 DKPL 610
KPL
Sbjct 569 TKPL 572
>P0A0U8 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
meningitidis serogroup A / serotype 4A (strain DSM 15465
/ Z2491)]
Length=581
Score = 351 bits (901), Expect = 9e-117
Identities = 207/604 (34%), Positives = 341/604 (56%), Gaps = 36/604 (6%)
Query 10 MIDKRIKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQN 69
+I K ++ +KP + F L+ + + F LIAR Y+Q + +FL+
Sbjct 2 LIKSEYKPRMLPKEEQVKKPMTSNGRISFVLM--AIAVLFAGLIARGLYLQTVTYNFLKE 59
Query 70 KANANILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKD 129
+ + I+RT+ + A RG +SDR+G LA+S P + P+ E+++
Sbjct 60 QGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPK--------------EMKEM 105
Query 130 PNNRKLKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILK 189
P+ +L+R L EL D V +D L+ ++ + +S ++ +++++ P+ A+ +
Sbjct 106 PSAAQLER--------LSELVD-VPVD--VLRNKLEQKGKS-FIWIKRQLDPKVAEEVKA 153
Query 190 RNFQGVYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDK 249
+ EK KR+YP A +IG T+ +G G EGLE+ L L G DG + V+RD+
Sbjct 154 LGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDR 213
Query 250 RGNRLKISEVIREGEP--GENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTG 307
+GN + + R P G++I LS+D R+Q + Y EL A + A++ + + +D +TG
Sbjct 214 QGNIVDSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTG 273
Query 308 EILAMASWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIV 367
EILA+A+ P+Y+PN + G ++ + RNR DM EPGS +KPF ++ AL++G+ N +
Sbjct 274 EILALANTPAYDPN-RPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERL 332
Query 368 NTSPGSMRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQ 427
NT P ++G +RDTH Y +L + G++ KSSNVG++K++ + + FY +G G
Sbjct 333 NTQP--YKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 428 RSAVHFPGESGGLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLR 487
R FPGE+ GL+ + P + TM++GYGL ++LQLA+ Y L + GV +P+S
Sbjct 391 RMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE 450
Query 488 KLDEPPKGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKG 547
K P+G+++ A +V +++ VT PGGT T + G+ VG KTGTA K +G+
Sbjct 451 KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKF-VNGR- 508
Query 548 YAQNQYRALFAGVAPVSDPRLAMIIVVENPQGR-YYGGLVAAPVFTRIMQESLRLMNVPL 606
YA N++ A F G AP +PR+ + + ++ P YYGG+VA P F +IM SL ++ +
Sbjct 509 YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGISP 568
Query 607 DKPL 610
KPL
Sbjct 569 TKPL 572
>P0A0U9 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
meningitidis serogroup B (strain MC58)]
Length=581
Score = 351 bits (901), Expect = 9e-117
Identities = 207/604 (34%), Positives = 341/604 (56%), Gaps = 36/604 (6%)
Query 10 MIDKRIKQTRKKQQSISEKPSLAFDMWRFYLLWGVVLLCFVVLIARAFYVQVINKDFLQN 69
+I K ++ +KP + F L+ + + F LIAR Y+Q + +FL+
Sbjct 2 LIKSEYKPRMLPKEEQVKKPMTSNGRISFVLM--AIAVLFAGLIARGLYLQTVTYNFLKE 59
Query 70 KANANILRTEKIKAMRGVISDRHGVPLAISTPVMKVVIDPRDYFETKKEYDDISAELRKD 129
+ + I+RT+ + A RG +SDR+G LA+S P + P+ E+++
Sbjct 60 QGDNRIVRTQTLPATRGTVSDRNGAVLALSAPTESLFAVPK--------------EMKEM 105
Query 130 PNNRKLKRQLPDKNLNLDELADAVGMDRAELKKQMYARPRSRYLVLQKEIPPQQADLILK 189
P+ +L+R L EL D V +D L+ ++ + +S ++ +++++ P+ A+ +
Sbjct 106 PSAAQLER--------LSELVD-VPVD--VLRNKLEQKGKS-FIWIKRQLDPKVAEEVKA 153
Query 190 RNFQGVYTEKNYKRYYPQPQPNAQIIGLTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDK 249
+ EK KR+YP A +IG T+ +G G EGLE+ L L G DG + V+RD+
Sbjct 154 LGLENFVFEKELKRHYPMGNLFAHVIGFTDIDGKGQEGLELSLEDSLHGEDGAEVVLRDR 213
Query 250 RGNRLKISEVIREGEP--GENITLSIDSRLQYIMYRELTAAGVANNARSASAIAVDVKTG 307
+GN + + R P G++I LS+D R+Q + Y EL A + A++ + + +D +TG
Sbjct 214 QGNIVDSLDSPRNKAPKNGKDIILSLDQRIQTLAYEELNKAVEYHQAKAGTVVVLDARTG 273
Query 308 EILAMASWPSYNPNDKNGLSNKDAMRNRGAIDMFEPGSTMKPFTVSAALESGQYTPNTIV 367
EILA+A+ P+Y+PN + G ++ + RNR DM EPGS +KPF ++ AL++G+ N +
Sbjct 274 EILALANTPAYDPN-RPGRADSEQRRNRAVTDMIEPGSAIKPFVIAKALDAGKTDLNERL 332
Query 368 NTSPGSMRLGWHTIRDTHNYGALTLTGVIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQ 427
NT P ++G +RDTH Y +L + G++ KSSNVG++K++ + + FY +G G
Sbjct 333 NTQP--YKIGPSPVRDTHVYPSLDVRGIMQKSSNVGTSKLSARFGAEEMYDFYHELGIGV 390
Query 428 RSAVHFPGESGGLILPNSKLTPSQIGTMAYGYGLNATILQLAQGYAMLANHGVKMPLSLR 487
R FPGE+ GL+ + P + TM++GYGL ++LQLA+ Y L + GV +P+S
Sbjct 391 RMHSGFPGETAGLLRNWRRWRPIEQATMSFGYGLQLSLLQLARAYTALTHDGVLLPVSFE 450
Query 488 KLDEPPKGEQVLNPKIADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKG 547
K P+G+++ A +V +++ VT PGGT T + G+ VG KTGTA K +G+
Sbjct 451 KQAVAPQGKRIFKESTAREVRNLMVSVTEPGGTGTAGAVDGFDVGAKTGTARKF-VNGR- 508
Query 548 YAQNQYRALFAGVAPVSDPRLAMIIVVENPQGR-YYGGLVAAPVFTRIMQESLRLMNVPL 606
YA N++ A F G AP +PR+ + + ++ P YYGG+VA P F +IM SL ++ +
Sbjct 509 YADNKHIATFIGFAPAKNPRVIVAVTIDEPTAHGYYGGVVAGPPFKKIMGGSLNILGISP 568
Query 607 DKPL 610
KPL
Sbjct 569 TKPL 572
>Q89AQ0 Peptidoglycan D,D-transpeptidase FtsI [Buchnera aphidicola
subsp. Baizongia pistaciae (strain Bp)]
Length=576
Score = 318 bits (815), Expect = 5e-104
Identities = 194/579 (34%), Positives = 320/579 (55%), Gaps = 34/579 (6%)
Query 37 RFYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVPL 96
R +L ++++ +++++R ++Q+I L K+N LRT+ RG I+DR G PL
Sbjct 21 RITILLSLIIITIILVLSRITFLQIIVSKKLIYKSNLRSLRTQIEFNQRGNITDRLGYPL 80
Query 97 AISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGMD 156
AI+ PV + IDP+ F K+ NL L+ + +
Sbjct 81 AINIPVKNICIDPKLLFS---------------------KQTHIYPNLKWKMLSTVLSIP 119
Query 157 RAELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQIIG 216
+E+ ++ + ++ L ++ P+ ++ I + + G+Y ++KR+YP + +Q+IG
Sbjct 120 LSEIFYRIKYSKNNHFIYLAHKVNPEISEYISQLHIPGIYILDDFKRFYPFGKLTSQLIG 179
Query 217 LTNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIREGEPGENITLSIDSR 276
TN + G+EG+E NK L G G++++I D+ G ++ ++ + + +I LSID
Sbjct 180 FTNIDNEGIEGVEKSFNKLLMGKPGKKQIITDRYGRIIEQHNLVNKIQ-SHDIILSIDCS 238
Query 277 LQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGL-SNKDAMRNR 335
Q +Y L A ++N A+ AI V++ TGEIL+M + PSY+PN+ + L N +RN+
Sbjct 239 FQKFIYHILNQAVMSNKAKFGVAILVNIPTGEILSMVNTPSYDPNNSSELFKNNPLIRNK 298
Query 336 GAIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGALTLTGV 395
D+FE GST+KP + ALE TP T++NTS S+ + H I D + ALT + +
Sbjct 299 AITDIFELGSTVKPMIIMKALEKKIITPETVINTS--SLVVNKHIIHDVSYHHALTASDI 356
Query 396 IVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSK-LTPSQIGT 454
+ KSSN G +++ALS+P L Y + G+ + + GE G++ N K + T
Sbjct 357 LKKSSNTGVSRLALSIPISELIDIYSKFELGKSTNLGLIGERNGVLNTNKKHWSDLDKVT 416
Query 455 MAYGYGLNATILQLAQGYAMLANHGVKMPLSL-----RKLDEPPKGEQVLNPKIADQVLS 509
+++GYGL AT LQLA+ Y + +G+ PLS+ L +QV + KI V++
Sbjct 417 LSFGYGLMATPLQLARIYTTIGRYGLSKPLSIIVKNDTNLKNDIFSKQVFSKKIIKTVIN 476
Query 510 MLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPVSDPRLA 569
MLE+V PGG +A I GYR+ KTGTA K+ + KG N+Y + G APVS+P
Sbjct 477 MLEEVAKPGGAGFKAAIKGYRIAVKTGTAKKI--NSKGKYDNKYVSYIVGFAPVSNPTFC 534
Query 570 MIIVVENPQ-GRYYGGLVAAPVFTRIMQESLRLMNVPLD 607
++I++ P+ +YYGG +AAP+F IMQ+ L++ N+ D
Sbjct 535 LMIMINEPKSNKYYGGEIAAPIFKTIMQKILKIKNIKPD 573
>P16873 Probable peptidoglycan D,D-transpeptidase PenA [Neisseria
flavescens]
Length=400
Score = 280 bits (716), Expect = 1e-91
Identities = 153/395 (39%), Positives = 231/395 (58%), Gaps = 8/395 (2%)
Query 219 NSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIREGEP--GENITLSIDSR 276
N +G G EGLE+ L G DG + V+RD +GN + + R P G+++ LS+D R
Sbjct 1 NIDGKGQEGLELSREDSLRGEDGAKVVLRDNKGNIVDSLDSPRNSVPKNGQDMILSLDQR 60
Query 277 LQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNRG 336
+Q + Y EL A + A++ + + +D +TGEILA+ + P+Y+PN G +N + RNR
Sbjct 61 IQTLAYDELNKAVAYHKAKAGAVVVLDAQTGEILALVNSPAYDPNQP-GQANSEQRRNRA 119
Query 337 AIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGALTLTGVI 396
DM EPGS MKPFT++ AL+SG+ P NT P ++G T++DTH Y L + G++
Sbjct 120 VTDMIEPGSAMKPFTIAKALDSGKVDPTDTFNTLP--YKIGPATVQDTHVYPTLDVRGIM 177
Query 397 VKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGTMA 456
KSSNVG++K++ + FY +G G R FPGE+ GL+ + + TM+
Sbjct 178 QKSSNVGTSKLSAMFTPKEMYDFYHDLGVGVRMHSGFPGETAGLLRSWRRWQKIEQATMS 237
Query 457 YGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGEQVLNPKIADQVLSMLEQVTM 516
+GYGL ++LQLA+ Y +L + G +P+S K PKG++V+ A +V ++ VT
Sbjct 238 FGYGLQLSLLQLARAYTVLTHDGELLPVSFEKQAVAPKGKRVIKASTAKKVRELMVSVTE 297
Query 517 PGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPVSDPRLAMIIVVEN 576
GGT + G+ VG KTGTA KL +G+ Y N++ F G AP +PR+ + + ++
Sbjct 298 AGGTGIAGAVDGFDVGAKTGTARKL-VNGR-YVDNKHVGTFIGFAPAKNPRVIVAVTIDE 355
Query 577 PQGR-YYGGLVAAPVFTRIMQESLRLMNVPLDKPL 610
P YYGG+VA PVF +M SL ++ V KPL
Sbjct 356 PTANGYYGGVVAGPVFKEVMSGSLNILGVSPTKPL 390
>A0R022 Penicillin-binding protein PbpB [Mycolicibacterium smegmatis
(strain ATCC 700084 / mc(2)155)]
Length=648
Score = 252 bits (643), Expect = 4e-78
Identities = 183/585 (31%), Positives = 294/585 (50%), Gaps = 28/585 (5%)
Query 45 VLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVPLAISTPVMK 104
+L V+ + F +QV L+ +A + + T+ A+RG I DR+ LA +
Sbjct 56 ILAVLVIAAVQLFMLQVPRAAGLRAEAASQLKVTDITPAIRGSIIDRNNDKLAFTIEARA 115
Query 105 VVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGMDRAELKKQM 164
+ P +K+ D+ + ++ ++ PD+ LN A ++ K +
Sbjct 116 LTFQPT---RVRKQLDEAWRKAQEAGSSTSDDVPNPDERLNEIAKEIAARLNNTPDAKTV 172
Query 165 YARPRSR--YLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQIIGLTNSEG 222
+ +S ++ L + + P A+ I + F V +E+ R YP A I+G + +G
Sbjct 173 LKKLKSNETFVYLARAVDPAIANAITDK-FPEVGSERQDLRQYPGGSLAANIVGGIDWDG 231
Query 223 VGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIR-EGEPGENITLSIDSRLQYIM 281
G+ GLE L+ L+G DG R G + S R + G + L+ID +QY +
Sbjct 232 HGLLGLEDSLDAVLAGTDGSVTYDRGSDGVVIPGSYRNRHDAVDGSTVQLTIDDDIQYHV 291
Query 282 YRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNRGAIDMF 341
+++ A A+ A++ SA+ +D KTGE+LAM++ +++P+ G M N F
Sbjct 292 QQQVQMAKDASGAKNVSAVVLDAKTGEVLAMSNDNTFDPSQDIGRQADRQMGNPSVSSPF 351
Query 342 EPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGAL--TLTGVIVKS 399
EPGS K T +AA+E+G P+ ++ PGS+ +G T+RD N+G + T TGV KS
Sbjct 352 EPGSVNKIVTAAAAIENGLTNPDEVLQV-PGSIHMGGVTVRDAWNHGVMPYTTTGVFGKS 410
Query 400 SNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGTMAYGY 459
SNVG+ +A + + R+ G GQR+ V PGES GL+ P + + S + G
Sbjct 411 SNVGTLMLAQRVGPERFYEMLRKFGLGQRTNVGLPGESSGLLPPIDQWSGSSFSNLPIGQ 470
Query 460 GLNATILQLAQGYAMLANHGVKMPLSLRKL----------DEPPKGEQVLNPKIADQVLS 509
GL+ T+LQ+A Y +AN GV++P + K +E P+G +V++P+ A + S
Sbjct 471 GLSMTLLQMAAMYQTVANDGVRVPPRIIKSTIAPDGTVTEEERPEGIRVISPETARTLRS 530
Query 510 MLEQVT------MPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAPV 563
M V + GT QA + GY++ GKTGTA ++ P Y + Y FAG+AP
Sbjct 531 MFRSVVQRDPMGVQQGTGPQAAVEGYQIAGKTGTAQQINPACGCYYDDVYWITFAGIAPA 590
Query 564 SDPRLAMIIVVENPQGRYYG--GLVAAPVFTRIMQESLRLMNVPL 606
DPR + I+++ PQ G G AAP+F I L+ NVPL
Sbjct 591 DDPRYVIGIMMDAPQRAADGSPGSSAAPLFHEIASWLLQRHNVPL 635
>L0T911 Penicillin-binding protein PbpB [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=679
Score = 228 bits (580), Expect = 7e-69
Identities = 171/590 (29%), Positives = 282/590 (48%), Gaps = 44/590 (7%)
Query 44 VVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVPLAISTPVM 103
V+L+ +V + F++QV + L+ +A + T+ A RG I DR+ LA +
Sbjct 94 VILVLMLVAATQLFFLQVSHAAGLRAQAAGQLKVTDVQPAARGSIVDRNNDRLAFTIEAR 153
Query 104 KVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVG------MDR 157
+ P+ +++ ++ RK PD L ++A V D
Sbjct 154 ALTFQPK---RIRRQLEEA----------RKKTSAAPDPQQRLRDIAQEVAGKLNNKPDA 200
Query 158 AELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQIIGL 217
A + K++ + ++ L + + P A I + + V E+ R YP A ++G
Sbjct 201 AAVLKKLQSD--ETFVYLARAVDPAVASAICAK-YPEVGAERQDLRQYPGGSLAANVVGG 257
Query 218 TNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKISEVIR-EGEPGENITLSIDSR 276
+ +G G+ GLE L+ L+G DG R G + S R + G + L++D+
Sbjct 258 IDWDGHGLLGLEDSLDAVLAGTDGSVTYDRGSDGVVIPGSYRNRHKAVHGSTVVLTLDND 317
Query 277 LQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNRG 336
+Q+ + +++ A + A + SA+ +D KTGE+LAMA+ +++P+ G + N
Sbjct 318 IQFYVQQQVQQAKNLSGAHNVSAVVLDAKTGEVLAMANDNTFDPSQDIGRQGDKQLGNPA 377
Query 337 AIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIRDTHNYGAL--TLTG 394
FEPGS K SA +E G +P+ ++ PGS+++G T+ D +G + T TG
Sbjct 378 VSSPFEPGSVNKIVAASAVIEHGLSSPDEVLQV-PGSIQMGGVTVHDAWEHGVMPYTTTG 436
Query 395 VIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGT 454
V KSSNVG+ ++ + + R+ G GQR+ V PGES GL+ P + + S
Sbjct 437 VFGKSSNVGTLMLSQRVGPERYYDMLRKFGLGQRTGVGLPGESAGLVPPIDQWSGSTFAN 496
Query 455 MAYGYGLNATILQLAQGYAMLANHGVKMPLSLRKLDEPPKGE----------QVLNPKIA 504
+ G GL+ T+LQ+ Y +AN GV++P + K P G +V++ + A
Sbjct 497 LPIGQGLSMTLLQMTGMYQAIANDGVRVPPRIIKATVAPDGSRTEEPRPDDIRVVSAQTA 556
Query 505 DQVLSMLEQVTM------PGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFA 558
V ML V GT A +PGY++ GKTGTA ++ P Y + Y FA
Sbjct 557 QTVRQMLRAVVQRDPMGYQQGTGPTAGVPGYQMAGKTGTAQQINPGCGCYFDDVYWITFA 616
Query 559 GVAPVSDPRLAMIIVVENPQGRYYG--GLVAAPVFTRIMQESLRLMNVPL 606
G+A +PR + I+++NP G G AAP+F I ++ NVPL
Sbjct 617 GIATADNPRYVIGIMLDNPARNSDGAPGHSAAPLFHNIAGWLMQRENVPL 666
>Q03524 Stage V sporulation protein D [Bacillus subtilis (strain
168)]
Length=646
Score = 213 bits (543), Expect = 6e-64
Identities = 169/583 (29%), Positives = 275/583 (47%), Gaps = 47/583 (8%)
Query 38 FYLLWGVVLLCFVVLIARAFYVQVINKDFLQNKANANILRTEKIKAMRGVISDRHGVPLA 97
F LL+GV++ F+++ R YVQ + + L + A + R + RG I DR+GV LA
Sbjct 14 FVLLFGVIV--FLIIDTRLGYVQFVMGEKLTSLAKDSWSRNLPFEPERGEILDRNGVKLA 71
Query 98 ISTPVMKVVIDPRDYFETKKEYDDISAELRKDPNNRKLKRQLPDKNLNLDELADAVGMDR 157
+ V + PR K ++A L + K+ + + K
Sbjct 72 TNKSAPTVFVVPRQVQNPMKTSKQLAAVLNM--SEEKVYKHVTKK--------------- 114
Query 158 AELKKQMYARPRSRYLVLQKEIPPQQADLILKRNFQGVYTEKNYKRYYPQPQPNAQIIGL 217
A ++K P R +I ++A I + +GVY ++ R+YP + ++G
Sbjct 115 ASIEK---ITPEGR------KISNEKAKEIKALDLKGVYVAEDSIRHYPFGSFLSHVLGF 165
Query 218 TNSEGVGVEGLEMQLNKQLSGVDGEQKVIRDKRGNRLKI-SEVIREGEPGENITLSIDSR 276
+ G+ GLE + L G G K D +G ++ ++ + G ++ L++DS+
Sbjct 166 AGIDNQGLLGLEAYYDDDLKGEKGSVKFYTDAKGKKMPDEADDYTPPKDGLDMKLTVDSK 225
Query 277 LQYIMYRELTAAGVANNARSASAIAVDVKTGEILAMASWPSYNPNDKNGLSNKDAMRNRG 336
+Q IM REL A + A+A++ K GEIL M+S P ++P D + RN
Sbjct 226 VQTIMERELDNAEAKYHPDGMIAVAMNPKNGEILGMSSRPDFDPADYQSVDPSVYNRNLP 285
Query 337 AIDMFEPGSTMKPFTVSAALESGQYTPNTIVNTSPGSMRLGWHTIR--DTHNYGALTLTG 394
+EPGST K T++AALE + G + +R +G T
Sbjct 286 VWSTYEPGSTFKIITLAAALEEQKVNLKRDQFYDKGHAEVDGARLRCWKRGGHGLQTYLE 345
Query 395 VIVKSSNVGSAKIALSLPKDALPTFYRRVGFGQRSAVHFPGESGGLILPNSKLTPSQIGT 454
V+ S N G ++ L K+ L + + GFGQ++ + GE G++ P ++ P + T
Sbjct 346 VVQNSCNPGFVELGERLGKEKLFKYIKDFGFGQKTGIDLQGEGTGILFPLERVGPVEQAT 405
Query 455 MAYGYGLNATILQLAQGYAMLANHGVKM----------PLSLR--KLDEPPKGEQVLNPK 502
A+G G++ T +Q + N G P++ + K P +QV++ +
Sbjct 406 TAFGQGVSVTPIQQVAAVSAAVNGGTLYTPYIAKEWIDPVTKKTVKKQSPIAKKQVISEE 465
Query 503 IADQVLSMLEQVTMPGGTATQANIPGYRVGGKTGTAHKLRPDGKGYAQNQYRALFAGVAP 562
+ Q+ LE V + GT A + GYRVGGKTGTA K++ DGK Y +N + F G AP
Sbjct 466 TSKQIRYALESV-VAEGTGRNAFVEGYRVGGKTGTAQKVK-DGK-YLENNHIVSFIGFAP 522
Query 563 VSDPRLAMIIVVENPQGR-YYGGLVAAPVFTRIMQESLRLMNV 604
DP L + + V+NP+G +GG VAAP+ IM++SL + V
Sbjct 523 ADDPSLVVYVAVDNPKGTIQFGGTVAAPIVGNIMRDSLPELGV 565
Score = 19.2 bits (38), Expect = 7.6
Identities = 9/18 (50%), Positives = 12/18 (67%), Gaps = 0/18 (0%)
Query 11 IDKRIKQTRKKQQSISEK 28
ID K+T KKQ I++K
Sbjct 442 IDPVTKKTVKKQSPIAKK 459
Lambda K H a alpha
0.318 0.135 0.390 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4487814
Database: a3d8b02483ca9fb374598b8c276f7c2a.SwissProt.fasta
Posted date: May 9, 2024 12:13 AM
Number of letters in database: 8,769
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
