BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: f638c8053974fa8ae3807091746e7705.SwissProt.fasta
           1 sequences; 174 total letters



Query= ACIAD3356

Length=175
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

G3XCX7 Type IV pilus inner membrane component PilP [Pseudomonas a...  104     1e-33


>G3XCX7 Type IV pilus inner membrane component PilP [Pseudomonas 
aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / 
JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)]
Length=174

 Score = 104 bits (260),  Expect = 1e-33
 Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 5/172 (3%)

Query  1    MNNKILWLGLVILGLSGCDSRIDA--IHQEMATIRNQPPLPIEPAPVFMPVPSFQYSASQ  58
            M  +++   L++  L+GC    D   +   M  +R +P   IEP P F P  +F YSA+ 
Sbjct  1    MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAAS  60

Query  59   LRNPFLPS-SLAAELKIMSGKRVYPNLARPKQPLESYALESLTMKGSMRKINAQIMALIQ  117
            LR+PF P   +   ++    K + P+  R KQ LE + +E+  M G++   NAQ    + 
Sbjct  61   LRSPFQPPVKIDLTVRQKGNKVIKPDETRVKQFLEGFNIETFEMVGTLS--NAQGTFALV  118

Query  118  TPDNEIERVQVGNYIGLNYGRIIRITPTQIDLMEIVPDGHDGYIERPRSLVL  169
                 + RV+VG+Y+G N G+++ I+  +ID++EIVPDG   ++ERPRSL L
Sbjct  119  KGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGNWLERPRSLTL  170



Lambda      K        H        a         alpha
   0.323    0.141    0.419    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 24180


  Database: f638c8053974fa8ae3807091746e7705.SwissProt.fasta
    Posted date:  May 30, 2024  8:51 PM
  Number of letters in database: 174
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40