BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 19798a36aa27388db58846f39f182944.SwissProt.fasta
11 sequences; 7,089 total letters
Query= ACIAD3355
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
P34750 Fimbrial assembly protein PilQ [Pseudomonas aeruginosa (st... 504 5e-173
Q5FAD2 Type IV pilus biogenesis and competence protein PilQ [Neis... 404 5e-134
Q9JVW4 Type IV pilus biogenesis and competence protein PilQ [Neis... 358 4e-116
Q70M91 Type IV pilus biogenesis and competence protein PilQ [Neis... 358 4e-116
Q9ZHF3 Type IV pilus biogenesis and competence protein PilQ [Neis... 358 5e-116
P35819 Type IV pilus biogenesis and competence protein PilQ [Neis... 340 1e-109
P31772 Competence protein E [Haemophilus influenzae (strain ATCC ... 242 8e-76
P34749 DNA utilization protein HofQ [Escherichia coli (strain K12)] 221 4e-68
P03668 Putative assembly protein ORF430 [Pseudomonas phage Pf3] 194 4e-58
P31780 Secretin ExeD [Aeromonas hydrophila] 145 2e-39
P15644 Secretin PulD [Klebsiella pneumoniae] 143 8e-39
>P34750 Fimbrial assembly protein PilQ [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG
12228 / 1C / PRS 101 / PAO1)]
Length=714
Score = 504 bits (1298), Expect = 5e-173
Identities = 289/707 (41%), Positives = 418/707 (59%), Gaps = 65/707 (9%)
Query 49 IPGQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAGQKLAKSLIPVTTNEASSIDVSS 108
+PG E+++ F+ P+ Y +EQPAR+ LD KL ++ S+ V
Sbjct 34 LPGDRVELKLQFDEPVAAPRGYTIEQPARIALDLPGVQNKLGTKNRELSVGNTRSVTVVE 93
Query 109 DDKRARVVVNLKDAGAFTTRVEGNVFILKINN------IQSTATPVATSAPAPQ------ 156
R R+++NL ++TTRVEGN + + N + S A A+ APA
Sbjct 94 AKDRTRLIINLTALSSYTTRVEGNNLFVVVGNSPAGASVASAAPVKASPAPASYAQPIKP 153
Query 157 -------QGIGNIGFQRGAQGEGLVVIDLQGTNTPVDVQQQGSKVVVRFPGIKIPTHLAR 209
+ I NI FQRG +GEG VVIDL D+Q+QG K+ + F ++P L
Sbjct 154 KPYVPAGRAIRNIDFQRGEKGEGNVVIDLSDPTLSPDIQEQGGKIRLDFAKTQLPDALRV 213
Query 210 RLNTTDFATPVASIDSYNDGSNGVISIQSTGSYEYMAYQAENKLTISLK-RPQDNVRLNS 268
RL+ DFATPV +++ I+I+ +G Y+Y+ YQ +N+LT+S+K ++
Sbjct 214 RLDVKDFATPVQFVNASAQSDRTSITIEPSGLYDYLVYQTDNRLTVSIKPMTTEDAERRK 273
Query 269 KNNQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDI 328
K+N YTG+K+SL+FQDI+VR VLQL+ADFT++N+V +D+VQGNITL L++VPWDQALD+
Sbjct 274 KDNFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNVPWDQALDL 333
Query 329 ILKTKNLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIE 388
+LKTK LDKR+ GNV+ +AP E+ E E +A Q +LAPL+ E I + YAKAADI
Sbjct 334 VLKTKGLDKRKLGNVLLVAPADEIAARERQELEAQKQIAELAPLRRELIQVNYAKAADIA 393
Query 389 KLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQI 448
KL + G G RG+I++D RTN++I +++D++
Sbjct 394 KLFQSVTSDGGQEGKEGG-----------------RGSITVDDRTNSIIAYQPQERLDEL 436
Query 449 RKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNL 508
R+++ LDIPV+QVMIEARIV A + K +GV+WG G N G + N+
Sbjct 437 RRIVSQLDIPVRQVMIEARIVEANVGYDKSLGVRWG----GAYHKGNWSGYGKD---GNI 489
Query 509 RNPDSNG--------------TYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLE 554
D +G T T + P VDLG S I G I+ + +LDL+
Sbjct 490 GIKDEDGMNCGPIAGSCTFPTTGTSKSPSPF-VDLG-AKDATSGIGIGFIT-DNIILDLQ 546
Query 555 LSALQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLE 614
LSA++ G GE++S PKV+++DK+ AK+ G EVPYQ ++S A S TSFKEA LSLE
Sbjct 547 LSAMEKTGNGEIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATS---TSFKEAALSLE 603
Query 615 VTPNITPDGKILMELNIANDSIN-SYAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQT 673
VTP ITPD +I++E+ + D+ + NG +NKN +N +LVN+GET+V+GGVF
Sbjct 604 VTPQITPDNRIIVEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNE 663
Query 674 TNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIVNDTIV 720
+ +V KVPFLG+LPY+GRLF++ ++ KNELL+F+TPRI+N+ +
Sbjct 664 QSKSVEKVPFLGELPYLGRLFRRDTVTDRKNELLVFLTPRIMNNQAI 710
Score = 18.9 bits (37), Expect = 9.5
Identities = 6/22 (27%), Positives = 12/22 (55%), Gaps = 0/22 (0%)
Query 44 VVPMNIPGQGTEIRVMFNGLPP 65
+V + + + + M NG+PP
Sbjct 615 IVEVKVTKDAPDYQNMLNGVPP 636
>Q5FAD2 Type IV pilus biogenesis and competence protein PilQ [Neisseria
gonorrhoeae (strain ATCC 700825 / FA 1090)]
Length=723
Score = 404 bits (1037), Expect = 5e-134
Identities = 244/729 (33%), Positives = 382/729 (52%), Gaps = 66/729 (9%)
Query 27 VAYAIMQVASAQVAITNVVPMNIPGQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAG 86
VA A Q ASA IT++ ++P + ++V F+ P + PAR+ LDF++ G
Sbjct 14 VATAAFQTASAG-NITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTG 72
Query 87 QKLAKSLIPVTTNEASSIDVSSDDKRARVVVNLKDAGAFTTRVEGNVFILKINNIQST-- 144
+ + ++ S I + + RAR+V+NL G + T V GN + IN T
Sbjct 73 ISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVS 132
Query 145 -----ATPVATSAPAPQQGIG---------------------------NIGFQRGAQGEG 172
A A +APA QQ NI F++ + G
Sbjct 133 APARPAVKAAPAAPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQTNIDFRKDGKNAG 192
Query 173 LVVIDLQGTNTPVDVQQQGSKVVVRFPGIKIPTHLARRLNTTDFATPVASIDSYNDGSNG 232
++ + G D+ QQ ++V +PT L R L+ DF TPV + ++
Sbjct 193 IIELAALGFAGQPDISQQHDHIIVTLKNHTLPTALQRSLDVADFKTPVQKVTLKRLNNDT 252
Query 233 VISIQSTGSYEYMAYQAE-NKLTISLKRPQDNVRLNSKNN--QNYTGKKISLDFQDIEVR 289
+ I +TG++E + A T + + N+ NN + +TG+KISLDFQD+E+R
Sbjct 253 QLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISLDFQDVEIR 312
Query 290 RVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIILKTKNLDKRRNGNVIWIAPV 349
+LQ+LA + +N+V +DSV G +TL LKDVPWDQALD++++ +NLD R+ GN++ IAP
Sbjct 313 TILQILAKESGMNIVASDSVSGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPR 372
Query 350 SELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIEKLITQGRNSGTSNSNTNGSAT 409
EL+ ++ +A L L ++ LKY + ++ T N N
Sbjct 373 DELLAKDKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRN------ 426
Query 410 VEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIRKMIDLLDIPVKQVMIEARIV 469
TL+S RG++ +DP TNTLI+ DT I++ RK+ID LD+P +QVMIEARIV
Sbjct 427 ---------TLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQVMIEARIV 477
Query 470 RATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYTIERPDNLNVDL 529
A FS+++GVK+G + +N G W + N G E +N+ +
Sbjct 478 EAADGFSRDLGVKFGATGRKKLKNETSAFG------WGV-NSGFGGGDKWEAQTKINLPV 530
Query 530 GVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATGVEVP 589
S + ++S L+LELSA ++ + ++ P+V++ ++++AK+ +G E+P
Sbjct 531 AAAANSISLVR----AISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIP 586
Query 590 YQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSYAQNGEAIL-- 647
+ TT S G++ T K+A+L L VTPNITPDG+I+M + I DS A IL
Sbjct 587 FTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQCASGNNTILCI 646
Query 648 NKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELL 707
+ ++NT +V NG T+++GG++E+ N +TKVP LGD+P +G LFK K + ELL
Sbjct 647 STKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTRGKKTDRRELL 706
Query 708 IFVTPRIVN 716
IF+TPRI++
Sbjct 707 IFITPRIID 715
>Q9JVW4 Type IV pilus biogenesis and competence protein PilQ [Neisseria
meningitidis serogroup A / serotype 4A (strain DSM
15465 / Z2491)]
Length=761
Score = 358 bits (919), Expect = 4e-116
Identities = 207/580 (36%), Positives = 326/580 (56%), Gaps = 34/580 (6%)
Query 142 QSTATPVATSAPAPQQGIGNIGFQRGAQGEGLVVIDLQGTNTPVDVQQQGSKVVVRFPGI 201
Q TA P A P + NI F++ + G++ + G D+ QQ ++V
Sbjct 201 QQTAAPAKQQAATPAKQT-NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNH 259
Query 202 KIPTHLARRLNTTDFATPVASIDSYNDGSNGVISIQSTGSYEYMAYQAE-NKLTISLKRP 260
+PT L R L+ DF TPV + ++ + I + G++E + A T +
Sbjct 260 TLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPK 319
Query 261 QDNVRLNSKNN--QNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLK 318
+ N+ NN + +TG+KISLDFQD+E+R +LQ+LA + +N+V +DSV G +TL LK
Sbjct 320 KQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLK 379
Query 319 DVPWDQALDIILKTKNLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYIL 378
DVPWDQALD++++ +NLD R+ GN++ IAP EL+ ++ +A L L ++
Sbjct 380 DVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKAFLQAEKDIADLGALYSQNFQ 439
Query 379 LKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLII 438
LKY + ++ T N N TL+S RG++ +DP TNTLI+
Sbjct 440 LKYKNVEEFRSILRLDNADTTGNRN---------------TLVSGRGSVLIDPATNTLIV 484
Query 439 NDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLV 498
DT I++ RK+ID LD+P +QVMIEARIV A FS+++GVK+G + +N
Sbjct 485 TDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAF 544
Query 499 GGSETTLWNLRNP-DSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSA 557
G W + + + + E NL + T A+SI+ + ++S L+LELSA
Sbjct 545 G------WGVNSGFGGDDKWGAETKINLPI-----TAAANSISL-VRAISSGALNLELSA 592
Query 558 LQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTP 617
++ + ++ P+V++ ++++AK+ +G E+P+ T+ + GS+ T K+A+L L VTP
Sbjct 593 SESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTP 652
Query 618 NITPDGKILMELNIANDSINSYAQNGEAIL--NKNTINTNVLVNNGETVVLGGVFEQTTN 675
NITPDG+I+M + I DS A + IL + +NT +V NG T+++GG++E+
Sbjct 653 NITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNG 712
Query 676 NAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIV 715
N +TKVP LGD+P +G LFK K + ELLIF+TPRI+
Sbjct 713 NTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIM 752
Score = 20.0 bits (40), Expect = 4.2
Identities = 7/31 (23%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 91 KSLIPVTTNEASSIDVSSDDKRARVVVNLKD 121
++++ + E+ V+SD ++ ++LKD
Sbjct 350 RTILQILAKESGMNIVASDSVNGKMTLSLKD 380
>Q70M91 Type IV pilus biogenesis and competence protein PilQ [Neisseria
meningitidis serogroup B (strain MC58)]
Length=769
Score = 358 bits (919), Expect = 4e-116
Identities = 207/580 (36%), Positives = 326/580 (56%), Gaps = 34/580 (6%)
Query 142 QSTATPVATSAPAPQQGIGNIGFQRGAQGEGLVVIDLQGTNTPVDVQQQGSKVVVRFPGI 201
Q A P A AP + NI F++ + G++ + G D+ QQ ++V
Sbjct 209 QQAAAPAKQQAAAPAKQT-NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNH 267
Query 202 KIPTHLARRLNTTDFATPVASIDSYNDGSNGVISIQSTGSYEYMAYQAE-NKLTISLKRP 260
+PT L R L+ DF TPV + ++ + I + G++E + A T +
Sbjct 268 TLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPK 327
Query 261 QDNVRLNSKNN--QNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLK 318
+ N+ NN + +TG+KISLDFQD+E+R +LQ+LA + +N+V +DSV G +TL LK
Sbjct 328 KQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLK 387
Query 319 DVPWDQALDIILKTKNLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYIL 378
DVPWDQALD++++ +NLD R+ GN++ IAP EL+ ++ +A L L ++
Sbjct 388 DVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKALLQAEKDIADLGALYSQNFQ 447
Query 379 LKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLII 438
LKY + ++ T N N TL+S RG++ +DP TNTLI+
Sbjct 448 LKYKNVEEFRSILRLDNADTTGNRN---------------TLISGRGSVLIDPATNTLIV 492
Query 439 NDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLV 498
DT I++ RK+ID LD+P +QVMIEARIV A FS+++GVK+G + +N
Sbjct 493 TDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAF 552
Query 499 GGSETTLWNLRNP-DSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSA 557
G W + + + + E NL + T A+SI+ + ++S L+LELSA
Sbjct 553 G------WGVNSGFGGDDKWGAETKINLPI-----TAAANSISL-VRAISSGALNLELSA 600
Query 558 LQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTP 617
++ + ++ P+V++ ++++AK+ +G E+P+ T+ + GS+ T K+A+L L VTP
Sbjct 601 SESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTP 660
Query 618 NITPDGKILMELNIANDSINSYAQNGEAIL--NKNTINTNVLVNNGETVVLGGVFEQTTN 675
NITPDG+I+M + I DS A + IL + +NT +V NG T+++GG++E+
Sbjct 661 NITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNG 720
Query 676 NAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIV 715
N +TKVP LGD+P +G LFK K + ELLIF+TPRI+
Sbjct 721 NTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIM 760
Score = 20.0 bits (40), Expect = 4.2
Identities = 7/31 (23%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 91 KSLIPVTTNEASSIDVSSDDKRARVVVNLKD 121
++++ + E+ V+SD ++ ++LKD
Sbjct 358 RTILQILAKESGMNIVASDSVNGKMTLSLKD 388
>Q9ZHF3 Type IV pilus biogenesis and competence protein PilQ [Neisseria
meningitidis serogroup B / serotype 15 (strain H44/76)]
Length=777
Score = 358 bits (919), Expect = 5e-116
Identities = 207/580 (36%), Positives = 326/580 (56%), Gaps = 34/580 (6%)
Query 142 QSTATPVATSAPAPQQGIGNIGFQRGAQGEGLVVIDLQGTNTPVDVQQQGSKVVVRFPGI 201
Q A P A AP + NI F++ + G++ + G D+ QQ ++V
Sbjct 217 QQAAAPAKQQAAAPAKQT-NIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNH 275
Query 202 KIPTHLARRLNTTDFATPVASIDSYNDGSNGVISIQSTGSYEYMAYQAE-NKLTISLKRP 260
+PT L R L+ DF TPV + ++ + I + G++E + A T +
Sbjct 276 TLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPK 335
Query 261 QDNVRLNSKNN--QNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLK 318
+ N+ NN + +TG+KISLDFQD+E+R +LQ+LA + +N+V +DSV G +TL LK
Sbjct 336 KQNLESGGVNNAPKTFTGRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLK 395
Query 319 DVPWDQALDIILKTKNLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYIL 378
DVPWDQALD++++ +NLD R+ GN++ IAP EL+ ++ +A L L ++
Sbjct 396 DVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAKDKALLQAEKDIADLGALYSQNFQ 455
Query 379 LKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLII 438
LKY + ++ T N N TL+S RG++ +DP TNTLI+
Sbjct 456 LKYKNVEEFRSILRLDNADTTGNRN---------------TLISGRGSVLIDPATNTLIV 500
Query 439 NDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLV 498
DT I++ RK+ID LD+P +QVMIEARIV A FS+++GVK+G + +N
Sbjct 501 TDTRSVIEKFRKLIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAF 560
Query 499 GGSETTLWNLRNP-DSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSA 557
G W + + + + E NL + T A+SI+ + ++S L+LELSA
Sbjct 561 G------WGVNSGFGGDDKWGAETKINLPI-----TAAANSISL-VRAISSGALNLELSA 608
Query 558 LQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTP 617
++ + ++ P+V++ ++++AK+ +G E+P+ T+ + GS+ T K+A+L L VTP
Sbjct 609 SESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTP 668
Query 618 NITPDGKILMELNIANDSINSYAQNGEAIL--NKNTINTNVLVNNGETVVLGGVFEQTTN 675
NITPDG+I+M + I DS A + IL + +NT +V NG T+++GG++E+
Sbjct 669 NITPDGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNG 728
Query 676 NAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIV 715
N +TKVP LGD+P +G LFK K + ELLIF+TPRI+
Sbjct 729 NTLTKVPLLGDIPVIGNLFKTRGKKTDRRELLIFITPRIM 768
Score = 20.0 bits (40), Expect = 4.2
Identities = 7/31 (23%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 91 KSLIPVTTNEASSIDVSSDDKRARVVVNLKD 121
++++ + E+ V+SD ++ ++LKD
Sbjct 366 RTILQILAKESGMNIVASDSVNGKMTLSLKD 396
>P35819 Type IV pilus biogenesis and competence protein PilQ [Neisseria
gonorrhoeae]
Length=720
Score = 340 bits (872), Expect = 1e-109
Identities = 226/736 (31%), Positives = 363/736 (49%), Gaps = 80/736 (11%)
Query 27 VAYAIMQVASAQVAITNVVPMNIPGQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAG 86
VA A Q ASA IT++ ++P + ++V F+ P + PAR+ LDF++ G
Sbjct 14 VATAAFQTASAG-NITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTG 72
Query 87 QKLAKSLIPVTTNEASSIDVSSDDKRARVVVNLKDAGAFTTRVEGNVFILKINNIQST-- 144
+ + ++ S I + + RAR+V+NL G + T V GN + IN T
Sbjct 73 ISMDQQVLEYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVS 132
Query 145 -----ATPVATSAPAPQQGIG-----------------------------------NIGF 164
A A +APA QQ NI F
Sbjct 133 APARPAVKAAPAAPAKQQAAAPFTESVVSVSAPFSPAKQQAAASAKQQAATPAKQTNIDF 192
Query 165 QRGAQGEGLVVIDLQGTNTPVDVQQQGSKVVVRFPGIKIPTHLARRLNTTDFATPVASID 224
++ + G++ + G D+ QQ ++V +PT L R L+ DF TPV +
Sbjct 193 RKDGKNAGIIELAALGFAGQPDISQQHDHIIVTLKNHTLPTALQRSLDVADFKTPVQKVT 252
Query 225 SYNDGSNGVISIQSTGSYEYMAYQAE-NKLTISLKRPQDNVRLNSKNN--QNYTGKKISL 281
++ + I +TG++E + A T + + N+ NN + +TG+KISL
Sbjct 253 LKRLNNDTQLIITTTGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFTGRKISL 312
Query 282 DFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIILKTKNLDKRRNG 341
DFQD+E+R +LQ+LA + +N+V +DSV G +TL LKDVPWDQALD++++ +NLD R+ G
Sbjct 313 DFQDVEIRTILQILAKESGMNIVASDSVSGKMTLSLKDVPWDQALDLVMQARNLDMRQQG 372
Query 342 NVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIEKLITQGRNSGTSN 401
N++ +AP + + +++ S K + K +I+K ++ N
Sbjct 373 NIVNMAP-----RRAACQRQSLLTSGKRHCRSGRAVFPKL--PIEIQKCGRIPQHPALDN 425
Query 402 SNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIRKMIDLLDIPVKQ 461
++T G+ TL+S RG++ +DP TNTLI+ DT I++ RK+ID LD+P +Q
Sbjct 426 ADTTGNR---------NTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRKLIDELDVPAQQ 476
Query 462 VMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYTIER 521
VMIEARIV A FS+++GVK+G + +N G W + + G +
Sbjct 477 VMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFG------WGVNSGFGGGDKWEAK 530
Query 522 PDNLNVDLGVTTTGASSIAFGLISLSDF--MLDLELSALQADGYGEVISTPKVMSADKQK 579
P +T DF L+LELSA ++ + ++ P+V++ ++++
Sbjct 531 PK--------STCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKE 582
Query 580 AKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIANDSINSY 639
AK+ +G E+P+ TT S G++ T K+A+L L VT NITPDG+I+M + I DS
Sbjct 583 AKIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQC 642
Query 640 AQNGEAIL--NKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697
A IL + ++NT +V NG T+++GG++E+ N +TKVP L P K +
Sbjct 643 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPLSATSLKHS 702
Query 698 AKSEAKNELLIFVTPR 713
K+ + PR
Sbjct 703 GKNRPPRTADFQLPPR 718
>P31772 Competence protein E [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=445
Score = 242 bits (618), Expect = 8e-76
Identities = 151/449 (34%), Positives = 239/449 (53%), Gaps = 48/449 (11%)
Query 271 NQNYTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIIL 330
N ++ + + + L+ LA ++N+V D ++ I+L L ++ + L II
Sbjct 24 NPKTDNERFFIRLSQAPLAQTLEQLAFQQDVNLVIGDILENKISLKLNNIDMPRLLQIIA 83
Query 331 KTKNLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAP-LQTEYILLKYAKAADIEK 389
K+K+L ++ + + L S+ + + T P L + + L +AKA+++ K
Sbjct 84 KSKHLTLNKDDGIYY------LNGSQSGKGQVAGNLTTNEPHLVSHTVKLHFAKASELMK 137
Query 390 LITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIR 449
+T G G+LLSP G+I+ D R+N L+I D + + I+
Sbjct 138 SLTTGS----------------------GSLLSPAGSITFDDRSNLLVIQDEPRSVQNIK 175
Query 450 KMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLR 509
K+I +D P++Q+ IEARIV T KE+GV+WGI + N V GS T
Sbjct 176 KLIAEMDKPIEQIAIEARIVTITDESLKELGVRWGIFNPTENARR---VAGSLT------ 226
Query 510 NPDSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVIST 569
G DNLNV+ TTT A SIA + ++ +LDLELSAL+ + E+I++
Sbjct 227 -----GNSFENIADNLNVNFATTTTPAGSIALQVAKINGRLLDLELSALERENNVEIIAS 281
Query 570 PKVMSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMEL 629
P++++ +K+ A + G E+PY ++ T + F+EA+L LEVTP+I+ D IL++L
Sbjct 282 PRLLTTNKKSASIKQGTEIPY--IVSNTRNDTQSVEFREAVLGLEVTPHISKDNNILLDL 339
Query 630 NIANDSINS---YAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGD 686
++ +S S Y QN ++K INT V +GET+VLGGVF T + KVP LGD
Sbjct 340 LVSQNSPGSRVAYGQNEVVSIDKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGD 399
Query 687 LPYVGRLFKKTAKSEAKNELLIFVTPRIV 715
+P + RLF K ++ K EL+IFVTP I+
Sbjct 400 IPVIKRLFSKESERHQKRELVIFVTPHIL 428
>P34749 DNA utilization protein HofQ [Escherichia coli (strain
K12)]
Length=412
Score = 221 bits (562), Expect = 4e-68
Identities = 137/447 (31%), Positives = 235/447 (53%), Gaps = 65/447 (15%)
Query 277 KKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIILKTKNLD 336
+K++L D+ V +VLQ LA+ +N+V + V G ++LHL DVPW QAL ++K+ L
Sbjct 22 QKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLI 81
Query 337 KRRNGNVIWIAPVS----ELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIEKLIT 392
R+ GN++ + ++ + + E ++A+A A PL+ I L+YA A ++ K
Sbjct 82 TRQEGNILSVHSIAWQNNNIARQEAEQARAQAN----LPLENRSITLQYADAGELAKA-- 135
Query 393 QGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIRKMI 452
G+ LLS +G++++D RTN L++ D + + + +
Sbjct 136 ---------------------GEK---LLSAKGSMTVDKRTNRLLLRDNKTALSALEQWV 171
Query 453 DLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPD 512
+D+PV QV + A IV +E+GVKW TL + ++
Sbjct 172 AQMDLPVGQVELSAHIVTINEKSLRELGVKW--------------------TLADAQHAG 211
Query 513 SNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKV 572
G T L DL V T + + F + ++ +LDLELSAL+ ++I++P++
Sbjct 212 GVGQVT-----TLGSDLSVATA-TTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRL 265
Query 573 MSADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIA 632
+++ Q A + G E+PYQ +S + FKEA+L +EVTP + G+I ++L+I+
Sbjct 266 LASHLQPASIKQGSEIPYQ--VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHIS 323
Query 633 NDSINSYAQ--NGEAI-LNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPY 689
+ Q +GE + ++K I T V V +GET+ LGG+F + + VP LGD+P+
Sbjct 324 QNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPW 383
Query 690 VGRLFKKTAKSEAKNELLIFVTPRIVN 716
G+LF+ K + + EL++F+TPR+V+
Sbjct 384 FGQLFRHDGKEDERRELVVFITPRLVS 410
>P03668 Putative assembly protein ORF430 [Pseudomonas phage Pf3]
Length=430
Score = 194 bits (493), Expect = 4e-58
Identities = 136/443 (31%), Positives = 226/443 (51%), Gaps = 55/443 (12%)
Query 274 YTGKKISLDFQDIEVRRVLQLLADFTNINMVTADSVQGNITLHLKDVPWDQALDIILKTK 333
+ ++++ +I++R + L+ADF ++V S+QG ++L DVP QA D++L++
Sbjct 19 FASDRLTVKHHEIDIRVAIPLVADFCGRSVVLGPSIQGVVSLDFDDVPCSQAFDLLLESN 78
Query 334 NLDKRRNGNVIWIAPVSELIKSEEDEAKAIAQSTKLAPLQTEYILLKYAKAADIEKLITQ 393
+L G+V+ I + +++ SE K L+T A DIE+ +
Sbjct 79 HLLSSMVGDVLVITAMDQVLNSER----------KADDLRT--FRRDLFNANDIERRVI- 125
Query 394 GRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRTNTLIINDTSQKIDQIRKMID 453
+ + + S V +S +L +P ++++D RTN++ S + +I
Sbjct 126 ------NIVHASASEVVSLFKESFMSLDAPGMSMTVDERTNSVFAALPSSFFPALESVIQ 179
Query 454 LLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDS 513
+D+PV+QV IEA +V A+ +SK +G+ WG S
Sbjct 180 AIDVPVRQVAIEANVVEASVDWSKRLGLNWG-------------------------GALS 214
Query 514 NGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVM 573
G ++ +L+V G SSI FG +S + LD +A++ +G G V+S P ++
Sbjct 215 LGNWSAVTAGDLSVAAG------SSIGFGFLS-NTLSLDGLFTAMENEGNGRVVSRPTLL 267
Query 574 SADKQKAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIAN 633
+ D+Q A V G E+PYQ + A S A FK A LSLEV P I+PD I++E+ ++
Sbjct 268 TLDRQSASVLRGTELPYQQSAGDGATSVA---FKHAALSLEVKPVISPDNSIVIEVLVSR 324
Query 634 DSIN-SYAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGR 692
DS N S A +G ++ N + T + V +G+TVVLGGV+ ++V + +P +GR
Sbjct 325 DSPNFSNAIDGVPPIDTNRLVTTIRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGR 384
Query 693 LFKKTAKSEAKNELLIFVTPRIV 715
LFKK + ELLIF+TPRI+
Sbjct 385 LFKKKEHVTEQYELLIFLTPRIL 407
>P31780 Secretin ExeD [Aeromonas hydrophila]
Length=678
Score = 145 bits (365), Expect = 2e-39
Identities = 105/353 (30%), Positives = 171/353 (48%), Gaps = 22/353 (6%)
Query 374 TEYILLKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRGTISLDPRT 433
T LKY KA D+ +++ +S ++ G+AT G S+G + IS D T
Sbjct 269 TRVFYLKYGKAKDMVEVLKGVSSSIEADKKGGGTATTAGGGASIG---GGKLAISADETT 325
Query 434 NTLIINDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGILSQGINQN 493
N L+I + ++ +++ LDI QV++EA IV +GV+W + G Q
Sbjct 326 NALVITAQPDVMAELEQVVAKLDIRRAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQF 385
Query 494 SNLLVGGSETTLWNLRNPDSNGTYTIERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDL 553
+N G + ++ NGT T L + +A G + ML
Sbjct 386 TNAGPGIGSVAI-AAKDYKDNGTTT---------GLAKLAENFNGMAAGFYQGNWAML-- 433
Query 554 ELSALQADGYGEVISTPKVMSADKQKAKVATGVEVPYQS-TTNSAAGST--ATTSFKEAL 610
++AL + +++STP +++ D ++A G EVP Q+ T NS +G T +T K
Sbjct 434 -VTALSTNTKSDILSTPSIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVG 492
Query 611 LSLEVTPNITPDGKILMELNIANDSINSYAQNGEAI---LNKNTINTNVLVNNGETVVLG 667
L VTP I +L+ + S+ A + + + T+ VLV +GETVVLG
Sbjct 493 TKLVVTPQINEGDSVLLTIEQEVSSVGKQATGTDGLGPTFDTRTVKNAVLVKSGETVVLG 552
Query 668 GVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIVNDTIV 720
G+ ++ T V+KVP LGD+P +G LF+ T+ + +K L++F+ P I+ D V
Sbjct 553 GLMDEQTKEEVSKVPLLGDIPVLGYLFRSTSNNTSKRNLMVFIRPTILRDANV 605
>P15644 Secretin PulD [Klebsiella pneumoniae]
Length=660
Score = 143 bits (360), Expect = 8e-39
Identities = 110/420 (26%), Positives = 198/420 (47%), Gaps = 48/420 (11%)
Query 322 WDQALDIILKTKNLDKRRNGNVIWIAPVSELIKSEEDEA-----------KAIAQSTKLA 370
W A D++ L+K + + + + V+ ++ E A + IA +L
Sbjct 201 WASAADVVKLVTELNKDTSKSALPGSMVANVVADERTNAVLVSGEPNSRQRIIAMIKQLD 260
Query 371 PLQ-----TEYILLKYAKAADIEKLITQGRNSGTSNSNTNGSATVEPLGDSVGTLLSPRG 425
Q T+ I LKYAKA+D+ +++T S T S + V L ++
Sbjct 261 RQQATQGNTKVIYLKYAKASDLVEVLTG--ISSTMQSEKQAAKPVAALDKNI-------- 310
Query 426 TISLDPRTNTLIINDTSQKIDQIRKMIDLLDIPVKQVMIEARIVRATTSFSKEMGVKWGI 485
I +TN LI+ ++ + ++I LDI QV++EA I + +G++W
Sbjct 311 IIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRPQVLVEAIIAEVQDADGLNLGIQWAN 370
Query 486 LSQGINQ--NSNLLVGGSETTLWNLRNPDSNGTYTIERPDNLNVDLGVTTTGASSIAFGL 543
+ G+ Q NS L + T + + +GT ++ L + + IA G
Sbjct 371 KNAGMTQFTNSGLPIS---TAIAGANQYNKDGT--------VSSSLASALSSFNGIAAGF 419
Query 544 ISLSDFMLDLELSALQADGYGEVISTPKVMSADKQKAKVATGVEVPYQSTTNSAAGSTA- 602
+ ML L+AL + ++++TP +++ D +A G EVP + + + +G
Sbjct 420 YQGNWAML---LTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPVLTGSQTTSGDNIF 476
Query 603 -TTSFKEALLSLEVTPNITPDGKILMEL----NIANDSINSYAQNGEAILNKNTINTNVL 657
T K + L+V P I +L+E+ + D+ +S + + A N T+N VL
Sbjct 477 NTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLGATFNTRTVNNAVL 536
Query 658 VNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKTAKSEAKNELLIFVTPRIVND 717
V +GETVV+GG+ +++ ++ KVP LGD+P +G LF+ T+K +K L++F+ P ++ D
Sbjct 537 VGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKRNLMLFIRPTVIRD 596
Score = 20.0 bits (40), Expect = 4.2
Identities = 9/22 (41%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 210 RLNTTDFATPVASIDSYNDGSN 231
R +T F A+ID++N G N
Sbjct 638 RQDTAAFRQVSAAIDAFNLGGN 659
Lambda K H a alpha
0.314 0.131 0.361 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4323964
Database: 19798a36aa27388db58846f39f182944.SwissProt.fasta
Posted date: May 31, 2024 7:55 PM
Number of letters in database: 7,089
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
