BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 25d95cd470b9295312fad0a5b9a24064.SwissProt.fasta
7 sequences; 1,542 total letters
Query= ACIAD3347
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
A8AVK0 Protein LemA [Streptococcus gordonii (strain Challis / ATC... 109 5e-34
Q58971 Protein LemA [Methanocaldococcus jannaschii (strain ATCC 4... 84.7 1e-24
Q2W8L6 Magnetosome protein MamQ 2 [Magnetospirillum magneticum (s... 53.5 1e-12
Q2W8P9 Magnetosome protein MamQ 1 [Magnetospirillum magneticum (s... 53.5 1e-12
P43054 Protein LemA [Metamycoplasma hominis (strain ATCC 23114 / ... 50.4 1e-11
Q93DY8 Magnetosome protein MamQ [Magnetospirillum gryphiswaldense... 50.4 1e-11
P71378 Uncharacterized protein HI_1339/HI_1462.1 [Haemophilus inf... 35.0 1e-06
>A8AVK0 Protein LemA [Streptococcus gordonii (strain Challis /
ATCC 35105 / BCRC 15272 / CH1 / DL1 / V288)]
Length=189
Score = 109 bits (272), Expect = 5e-34
Identities = 63/184 (34%), Positives = 93/184 (51%), Gaps = 10/184 (5%)
Query 12 VLASTLVFSGCGYNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHEQQVLT 71
V+ ++F YN+L AWS++ Q +RR DL+PNL+ VKGY K+EQ L
Sbjct 9 VIVVIVLFVISVYNSLVRARMQTQEAWSQIDVQLKRRNDLLPNLIETVKGYGKYEQATLE 68
Query 72 DVTQARSNVAGLKVDKEVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKANEQFRD 131
VTQ R+ VA + ++ A LT +S + AV+E+YPDLKANE +
Sbjct 69 KVTQLRAQVASASSPADAMK----------ASDALTRQISGIFAVAESYPDLKANENYLK 118
Query 132 LQVQLEGTENRIAVARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNFSADAGAEKAP 191
LQ +L TEN+I+ +R Y + +YN ++ FP + A + S + P
Sbjct 119 LQEELTNTENKISYSRQLYNSVAGNYNVKLQAFPSNVIAGMFAFRPADFLSTPEEEKAVP 178
Query 192 TVSF 195
V F
Sbjct 179 KVDF 182
>Q58971 Protein LemA [Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)]
Length=189
Score = 84.7 bits (208), Expect = 1e-24
Identities = 48/189 (25%), Positives = 87/189 (46%), Gaps = 10/189 (5%)
Query 7 LALSTVLASTLVFSGCGYNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHE 66
L L+ ++ +++ YN Q A +++ ++R D++ LV VK YA E
Sbjct 11 LILALIVLGIVIYIVSIYNRFQTLKNGAEATLGQIRVALKKRLDMINQLVEAVKSYASFE 70
Query 67 QQVLTDVTQARSNVAGLKVDKEVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKAN 126
++ LT +T+ RS+V +E+ Q + + L ++ ENYP+LK +
Sbjct 71 KETLTKITELRSSVLKANTAEEI----------QNIERESRNILGNILVAVENYPELKTS 120
Query 127 EQFRDLQVQLEGTENRIAVARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNFSADAG 186
E ++L ++ E+ IA R Y VQ++NT + FP + A + G +
Sbjct 121 ETVKELMDAIKEIEDEIARHRYTYNNIVQEFNTKIDTFPSNIVANLFGFRKMDYLQFEEE 180
Query 187 AEKAPTVSF 195
+ P +SF
Sbjct 181 IYERPKISF 189
>Q2W8L6 Magnetosome protein MamQ 2 [Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264)]
Length=272
Score = 53.5 bits (127), Expect = 1e-12
Identities = 43/176 (24%), Positives = 70/176 (40%), Gaps = 20/176 (11%)
Query 24 YNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHEQQVLTDVTQARSNVAGL 83
YNT E A S + QRR +L NLV + +A E + + + R+ G+
Sbjct 69 YNTFVTMSEDTQAKRSNYEVMIQRRDNLFGNLVKLTLNHAALEHSIFSHTSDKRTE--GV 126
Query 84 KVDK------------------EVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKA 125
+ K ++L D + A AL RL+AV E YP +++
Sbjct 127 EAGKGGPIGSALEQLMKQGGIGKLLGDIGGGKALLGADGGFGNALGRLMAVVEQYPTIQS 186
Query 126 NEQFRDLQVQLEGTENRIAVARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNF 181
+ ++ + L E+RIA R Y YN + ++P A + G + F
Sbjct 187 VDTYKHMMTSLVEMEDRIATRREDYNAAASTYNIEITKWPWNYLAFITGFKRAEYF 242
Score = 15.4 bits (28), Expect = 5.5
Identities = 5/10 (50%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 152 TTVQDYNTYV 161
T + YNT+V
Sbjct 64 TLLMRYNTFV 73
>Q2W8P9 Magnetosome protein MamQ 1 [Magnetospirillum magneticum
(strain AMB-1 / ATCC 700264)]
Length=272
Score = 53.5 bits (127), Expect = 1e-12
Identities = 43/176 (24%), Positives = 70/176 (40%), Gaps = 20/176 (11%)
Query 24 YNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHEQQVLTDVTQARSNVAGL 83
YNT E A S + QRR +L NLV + +A E + + + R+ G+
Sbjct 69 YNTFVTMSEDTQAKRSNYEVMIQRRDNLFGNLVKLTLNHAALEHSIFSHTSDKRTE--GV 126
Query 84 KVDK------------------EVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKA 125
+ K ++L D + A AL RL+AV E YP +++
Sbjct 127 EAGKGGPIGSALEQLMKQGGIGKLLGDIGGGKALLGADGGFGNALGRLMAVVEQYPTIQS 186
Query 126 NEQFRDLQVQLEGTENRIAVARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNF 181
+ ++ + L E+RIA R Y YN + ++P A + G + F
Sbjct 187 VDTYKHMMTSLVEMEDRIATRREDYNAAASTYNIEITKWPWNYLAFITGFKRAEYF 242
Score = 15.4 bits (28), Expect = 5.5
Identities = 5/10 (50%), Positives = 7/10 (70%), Gaps = 0/10 (0%)
Query 152 TTVQDYNTYV 161
T + YNT+V
Sbjct 64 TLLMRYNTFV 73
>P43054 Protein LemA [Metamycoplasma hominis (strain ATCC 23114
/ DSM 25592 / NBRC 14850 / NCTC 10111 / PG21)]
Length=219
Score = 50.4 bits (119), Expect = 1e-11
Identities = 36/159 (23%), Positives = 67/159 (42%), Gaps = 9/159 (6%)
Query 25 NTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHEQQVLTDVTQARSNVAGLK 84
N L + A S +Q +RR ++ +++ + GY E + L+ +TQ RS ++ +
Sbjct 55 NELMRDQNEIQNASSLIQAAEKRRRAVLIKMMDSLIGYKNFENETLSKITQYRSKLSNID 114
Query 85 VDKEVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKANEQFRDLQVQLEGTENRIA 144
VDK + +SQ+ L E YPDLKA++ + ++ E+ I
Sbjct 115 VDK---------TSPVELKSQIDSIRGALNFQFEQYPDLKASKLYLQFSTEISMQEDEIY 165
Query 145 VARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNFSA 183
Y +N+ + F A+ + ++ F A
Sbjct 166 ATIRNYNMIATSFNSKIYTFWTNCVAQKLDLYNVAIFQA 204
>Q93DY8 Magnetosome protein MamQ [Magnetospirillum gryphiswaldense
(strain DSM 6361 / JCM 21280 / NBRC 15271 / MSR-1)]
Length=272
Score = 50.4 bits (119), Expect = 1e-11
Identities = 39/174 (22%), Positives = 69/174 (40%), Gaps = 16/174 (9%)
Query 24 YNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGYAKHEQQVLTDVTQARSNVA-- 81
YN E A S + QRR +L NLV + +A E + + + R
Sbjct 69 YNAFVTMYEDAQAKRSNFEVMIQRRDNLFGNLVKLTLNHAALEHSIFSHTSDKRKESVEA 128
Query 82 ------GLKVDK--------EVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPDLKANE 127
G +++ ++L D + A AL RL+A+ E YP +++ +
Sbjct 129 GKGGPIGSAIEQLMKQGGIGKLLGDGGAGKALLGADGGFGNALGRLMAIVEQYPTVQSAD 188
Query 128 QFRDLQVQLEGTENRIAVARNRYITTVQDYNTYVRQFPQAMTAKVIGMHTKQNF 181
++ + L E+RIA R + + YN + ++P A + G + F
Sbjct 189 TYKHMMTSLVDMEDRIASKREEFNASAATYNVAITKWPWDYLAMITGFKRVEYF 242
>P71378 Uncharacterized protein HI_1339/HI_1462.1 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=129
Score = 35.0 bits (79), Expect = 1e-06
Identities = 35/122 (29%), Positives = 56/122 (46%), Gaps = 15/122 (12%)
Query 3 LFKKLALSTVLASTLVFSGCGYNTLQAKDESVTAAWSEVQNQYQRRADLVPNLVNVVKGY 62
+ KKL L+ VL S LV +GC ++ +AK + V V + D N + VK
Sbjct 4 IMKKLTLALVLGSALVVTGC-FDKQEAK-QKVEDTKQTVASVASETKDAAANTMTEVKEK 61
Query 63 AKHEQQVLTDVTQARSNVAGLKVDKEVLEDPQLFEKYQQAQSQLTGALSRLIAVSENYPD 122
A QQ+ TDV KV ++V + ++ + +A S+ G + A SE +
Sbjct 62 A---QQLSTDVKN--------KVAEKVEDAKEVIKSATEAASEKVGEMKE--AASEKASE 108
Query 123 LK 124
+K
Sbjct 109 MK 110
Lambda K H a alpha
0.318 0.129 0.356 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 212552
Database: 25d95cd470b9295312fad0a5b9a24064.SwissProt.fasta
Posted date: May 20, 2024 3:01 AM
Number of letters in database: 1,542
Number of sequences in database: 7
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
