BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 62c8bde78d450d5207d5065c016b26e3.SwissProt.fasta
8 sequences; 5,515 total letters
Query= ACIAD3342
Length=520
Score E
Sequences producing significant alignments: (Bits) Value
Q898Z5 D-alanine--D-alanine ligase B [Clostridium tetani (strain ... 42.4 2e-07
A0Q323 D-alanine--D-alanine ligase [Clostridium novyi (strain NT)] 41.2 5e-07
Q50140 Diaminopimelate decarboxylase [Mycobacterium leprae (strai... 41.2 6e-07
P9WIU6 Diaminopimelate decarboxylase [Mycobacterium tuberculosis ... 39.7 2e-06
P0A5M5 Diaminopimelate decarboxylase [Mycobacterium bovis (strain... 39.7 2e-06
P9WIU7 Diaminopimelate decarboxylase [Mycobacterium tuberculosis ... 39.7 2e-06
Q42523 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondri... 37.4 1e-05
Q8S6N5 Biotin carboxylase [Oryza sativa subsp. japonica] 36.2 3e-05
>Q898Z5 D-alanine--D-alanine ligase B [Clostridium tetani (strain
Massachusetts / E88)]
Length=358
Score = 42.4 bits (98), Expect = 2e-07
Identities = 53/214 (25%), Positives = 84/214 (39%), Gaps = 15/214 (7%)
Query 138 DEKTEELAKEIGLDIWFPPAALRQRCDNKMETVRIGN----KAGVYSVPNALVKVDSYEH 193
D + L K +GL P C +K+ T + K Y V N + E
Sbjct 115 DGTIQGLCKLVGLPCVGPGVLSSALCMDKIYTKYVLENFKFKQANYVVVNKFEYEKNKEE 174
Query 194 LMKIAEEYGLGQDLVIQTAFGDSGHTTFFIANQHDFSK-YEQEIIQDPEVKVMKRINCRG 252
++K E+ L D+ I+ A S N+ + K E+ I D V V + IN R
Sbjct 175 IIKEVEK--LQYDVFIKPANSGSSVGITKAHNKEELLKGLEEAFIHDKNVLVEEAINARE 232
Query 253 ATLEACATQSGTLVGPLLTEVVGAKELTPYQGGWCGNE---IFPGAFSERVRIKAREMAE 309
+ P E++ AKE Y+ + + P + + +E+A
Sbjct 233 IEVAVLGNDDPKAAVP--GEIIPAKEFYDYEAKYQNENSELLIPANIDNIKQEEIKELAI 290
Query 310 KFGNQLLNEGYRGYFDLDFLIDIDTDEVYLGELN 343
K L G G +DFL+D +++EVY E+N
Sbjct 291 KIYKLL---GCSGLARVDFLMDKESNEVYFNEVN 321
>A0Q323 D-alanine--D-alanine ligase [Clostridium novyi (strain
NT)]
Length=343
Score = 41.2 bits (95), Expect = 5e-07
Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 12/188 (6%)
Query 163 CDNKMETVRIGNKAGVYSVPNALVKVDSYEH-LMKIAE--EYGLGQDLVIQTAFGDSGHT 219
C +K+ T + GV +V Y++ M I E LG D+ I+ + S
Sbjct 122 CMDKVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVG 181
Query 220 TFFIANQHDFSKYEQEIIQ-DPEVKVMKRINCRGATLEACATQSGTLVGPLLTEVVGAKE 278
N+ + +E ++ D +V V +N R +E + V E+V A E
Sbjct 182 ISKAHNREELEAGLEEALKFDRKVLVEVALNAR--EIEVAVLGNDEPVAATPGEIVPANE 239
Query 279 LTPYQGGWCGNE---IFPGAFSERVRIKAREMAEKFGNQLLNEGYRGYFDLDFLIDIDTD 335
Y+ + + + P S K +E+A + L G +DFL+D +T+
Sbjct 240 FYDYEAKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKML---DCAGMSRVDFLVDKETE 296
Query 336 EVYLGELN 343
EVYL E+N
Sbjct 297 EVYLNEIN 304
>Q50140 Diaminopimelate decarboxylase [Mycobacterium leprae (strain
TN)]
Length=472
Score = 41.2 bits (95), Expect = 6e-07
Identities = 29/103 (28%), Positives = 51/103 (50%), Gaps = 5/103 (5%)
Query 148 IGLDIWFPPAALRQRCDNK-METVRIGNKAGV-YSVPNALVKVDSYEHLMKIAEEYGLGQ 205
+ L FPP + +NK + ++ KAGV Y V ++ ++ E L IA E G+ Q
Sbjct 125 VALHASFPPERISLHGNNKSVAELKDAVKAGVGYIVLDSTTEI---ERLDAIAGEAGIVQ 181
Query 206 DLVIQTAFGDSGHTTFFIANQHDFSKYEQEIIQDPEVKVMKRI 248
D++++ G HT FIA H+ K+ + + ++R+
Sbjct 182 DVLVRLTVGVEAHTHEFIATAHEDQKFGLSVASGAAMAAVRRV 224
>P9WIU6 Diaminopimelate decarboxylase [Mycobacterium tuberculosis
(strain CDC 1551 / Oshkosh)]
Length=447
Score = 39.7 bits (91), Expect = 2e-06
Identities = 27/103 (26%), Positives = 51/103 (50%), Gaps = 5/103 (5%)
Query 148 IGLDIWFPPAALRQRCDNK-METVRIGNKAGV-YSVPNALVKVDSYEHLMKIAEEYGLGQ 205
+ L FPP + +NK + + KAGV + V +++ ++ E L IA E G+ Q
Sbjct 100 VALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEI---ERLDAIAGEAGIVQ 156
Query 206 DLVIQTAFGDSGHTTFFIANQHDFSKYEQEIIQDPEVKVMKRI 248
D++++ G HT FI+ H+ K+ + + ++R+
Sbjct 157 DVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV 199
>P0A5M5 Diaminopimelate decarboxylase [Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97)]
Length=447
Score = 39.7 bits (91), Expect = 2e-06
Identities = 27/103 (26%), Positives = 51/103 (50%), Gaps = 5/103 (5%)
Query 148 IGLDIWFPPAALRQRCDNK-METVRIGNKAGV-YSVPNALVKVDSYEHLMKIAEEYGLGQ 205
+ L FPP + +NK + + KAGV + V +++ ++ E L IA E G+ Q
Sbjct 100 VALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEI---ERLDAIAGEAGIVQ 156
Query 206 DLVIQTAFGDSGHTTFFIANQHDFSKYEQEIIQDPEVKVMKRI 248
D++++ G HT FI+ H+ K+ + + ++R+
Sbjct 157 DVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV 199
>P9WIU7 Diaminopimelate decarboxylase [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=447
Score = 39.7 bits (91), Expect = 2e-06
Identities = 27/103 (26%), Positives = 51/103 (50%), Gaps = 5/103 (5%)
Query 148 IGLDIWFPPAALRQRCDNK-METVRIGNKAGV-YSVPNALVKVDSYEHLMKIAEEYGLGQ 205
+ L FPP + +NK + + KAGV + V +++ ++ E L IA E G+ Q
Sbjct 100 VALHASFPPERITLHGNNKSVSELTAAVKAGVGHIVVDSMTEI---ERLDAIAGEAGIVQ 156
Query 206 DLVIQTAFGDSGHTTFFIANQHDFSKYEQEIIQDPEVKVMKRI 248
D++++ G HT FI+ H+ K+ + + ++R+
Sbjct 157 DVLVRLTVGVEAHTHEFISTAHEDQKFGLSVASGAAMAAVRRV 199
>Q42523 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
[Arabidopsis thaliana]
Length=734
Score = 37.4 bits (85), Expect = 1e-05
Identities = 52/244 (21%), Positives = 97/244 (40%), Gaps = 40/244 (16%)
Query 129 NPVATFLMFDEKTEELAKEIGLDIWFPPAALRQRCDNKMETVRIGNKAGVYSVPNALVKV 188
+P FL +L ++ GL PPA+ + +K + RI AGV VP
Sbjct 115 HPGYGFLSESSDFAQLCEDSGLTFIGPPASAIRDMGDKSASKRIMGAAGVPLVPGYHGHE 174
Query 189 DSYEHLMKIAEEYGLGQDLVIQTAFGDSGHTTFFIANQHDFSKYEQEIIQDPEVKVMKRI 248
+H+ AE+ +G ++I+ G G + + DF+
Sbjct 175 QDIDHMKSEAEK--IGYPIIIKPTHGGGGKGMRIVQSGKDFAD----------------- 215
Query 249 NCRGATLEACATQSGTLVGPLLTEVVGAKELTPYQ--GGWCGNEIFPGAFSERVRIKARE 306
+ GA EA A+ + LL + + Q G GN + V+ + ++
Sbjct 216 SFLGAQREAAASFGVNTI--LLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQK 273
Query 307 MAEKFGNQLLNEGYR--------------GYFD---LDFLIDIDTDEVYLGELNPRICGA 349
+ E+ ++E +R GY++ ++F++D ++D+ Y E+N R+
Sbjct 274 IIEEAPAPNISEKFRANLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTRLQVE 333
Query 350 SPMT 353
P+T
Sbjct 334 HPVT 337
>Q8S6N5 Biotin carboxylase [Oryza sativa subsp. japonica]
Length=2267
Score = 36.2 bits (82), Expect = 3e-05
Identities = 28/103 (27%), Positives = 45/103 (44%), Gaps = 7/103 (7%)
Query 320 YRGYFDLDFLIDIDTDEVYLGELNPRICGASPMTNHAAFAYADAPLFLFHLLEFSGVPFD 379
Y G +++L ++T E Y ELNPR+ P+T A+ L ++ GVP
Sbjct 332 YVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEW----IAEINLPAAQVVVGMGVPL- 386
Query 380 LNVKEINERWAQPH--FIDSWSQVVIKYTEDKVDQVTHAPPTG 420
N+ EI + H D+W ++ T+ +D P G
Sbjct 387 YNIPEIRRFYGMEHGGGYDAWRKISAVATKFDLDNAQSVKPKG 429
Score = 21.2 bits (43), Expect = 1.1
Identities = 13/39 (33%), Positives = 23/39 (59%), Gaps = 4/39 (10%)
Query 87 GRHPNVFVPPESLHDEFNSIEDINNYLLQHKDVVDLIER 125
GR + V +SL +E+ S+E++ + +Q D+IER
Sbjct 897 GRESHARVVVKSLFEEYLSVEELFSDNIQS----DVIER 931
Score = 21.2 bits (43), Expect = 1.1
Identities = 9/37 (24%), Positives = 20/37 (54%), Gaps = 0/37 (0%)
Query 24 KRPDPKELNMNYSNKVTSISDMLLMFHRNERPIYFIS 60
+R P+ + + + T + LL F+R E P++ ++
Sbjct 1934 ERVVPQAGQVWFPDSATKTAQALLDFNREELPLFILA 1970
Lambda K H a alpha
0.323 0.141 0.436 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 2395183
Database: 62c8bde78d450d5207d5065c016b26e3.SwissProt.fasta
Posted date: May 19, 2024 9:06 PM
Number of letters in database: 5,515
Number of sequences in database: 8
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
