BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 270cbc02bd0dd934ae8b9a530edd9cf1.SwissProt.fasta
           1 sequences; 228 total letters



Query= ACIAD3335

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

P25402 Chaperone protein FanE [Escherichia coli]                      37.0    1e-07


>P25402 Chaperone protein FanE [Escherichia coli]
Length=228

 Score = 37.0 bits (84),  Expect = 1e-07
 Identities = 27/117 (23%), Positives = 51/117 (44%), Gaps = 10/117 (9%)

Query  77   SPMILSIQPGQKQLVRVVKLNPTL--TTEQAFRLIVDELPSDKAIKINGVQLLLQYSIPV  134
            SPM+  + P QKQ+VR+V +N  L    E  F L V E+P         + L +   + +
Sbjct  70   SPMVFKLNPKQKQIVRIVNINDNLPKDRESIFWLNVQEIPPAPKGDGGSLSLAINNRVKL  129

Query  135  FFKAPSTQPVITDPKKPMSLNGVQFSFKDHQLIVKNQSSHYIRLSQLNYIDETGKNI  191
             ++     P+     +  + N ++         ++N + +Y  +S +      GK+I
Sbjct  130  IYR-----PIALKNGRDEAENNIKLINSGTDSCLENTTPYYFAISDVKI---NGKSI  178


 Score = 14.6 bits (26),  Expect = 1.8
 Identities = 17/72 (24%), Positives = 30/72 (42%), Gaps = 18/72 (25%)

Query  153  SLNGVQFSFKDHQLIVK----NQSSHYIRLSQLNYIDETGKNIPVLGGLVGYALVGQMMQ  208
            +LN  ++ + + Q  V     N+S H  +     +ID   KN    G +V ++       
Sbjct  22   TLNSTRYIYNEGQQSVSVNIHNESEH--KYGGQVWIDNIDKN----GEVVFFS-------  68

Query  209  WPIPKGIAISPK  220
             P P    ++PK
Sbjct  69   -PSPMVFKLNPK  79


 Score = 13.9 bits (24),  Expect = 3.2
 Identities = 6/17 (35%), Positives = 9/17 (53%), Gaps = 0/17 (0%)

Query  134  VFFKAPSTQPVITDPKK  150
            V F +PS      +PK+
Sbjct  64   VVFFSPSPMVFKLNPKQ  80



Lambda      K        H        a         alpha
   0.322    0.138    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 44690


  Database: 270cbc02bd0dd934ae8b9a530edd9cf1.SwissProt.fasta
    Posted date:  May 20, 2024  9:36 AM
  Number of letters in database: 228
  Number of sequences in database:  1



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40