BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 5f8c02885a719d2585c2b5b728852d09.SwissProt.fasta
11 sequences; 1,652 total letters
Query= ACIAD3321
Length=149
Score E
Sequences producing significant alignments: (Bits) Value
P45791 Type IV pilus subunit protein TapA [Aeromonas hydrophila] 49.3 5e-12
P44623 Prepilin peptidase-dependent protein D homolog [Haemophilu... 47.8 2e-11
P09829 Fimbrial protein [Moraxella nonliquefaciens] 47.0 4e-11
O30583 Pilin-like competence factor ComP [Acinetobacter baylyi (s... 46.6 5e-11
P02973 Fimbrial protein [Pseudomonas aeruginosa] 45.8 1e-10
P20657 Type IV major alpha-pilin [Moraxella bovis] 44.7 3e-10
Q07564 Fimbrial protein EcpC [Eikenella corrodens] 43.9 5e-10
P36647 Prepilin peptidase-dependent protein D [Escherichia coli (... 43.5 7e-10
P17838 Fimbrial protein [Pseudomonas aeruginosa] 43.1 1e-09
P35646 Fimbrial protein EcpB [Eikenella corrodens] 42.7 1e-09
P36643 Fimbrial protein [Pseudomonas putida] 42.4 2e-09
>P45791 Type IV pilus subunit protein TapA [Aeromonas hydrophila]
Length=142
Score = 49.3 bits (116), Expect = 5e-12
Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 27/146 (18%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M K +GFTLIEL++ +A++AILA IA+P++ T +K E + T
Sbjct 1 MKKQSGFTLIELMIVVAIVAILAAIALPAY-----------QTYTKKAKFTEVVSATGTY 49
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTAK 120
+ VC TV +L TN TN V A +G T +A V G + A
Sbjct 50 KSALEVCFQTV----GSLLNCTNGTNGVPPA------AGASGLVTSVA--VSGNTASAAT 97
Query 121 FTLTRNGQSRCVEVGITGDTYYKEGA 146
T T + + G T + Y A
Sbjct 98 ITATGDATT----FGATSNVYIMTAA 119
>P44623 Prepilin peptidase-dependent protein D homolog [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=149
Score = 47.8 bits (112), Expect = 2e-11
Identities = 36/118 (31%), Positives = 53/118 (45%), Gaps = 20/118 (17%)
Query 2 TKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNA-----------------STR 44
T GFTLIEL++ IA+IAILATIA+PS+ + ++ ST
Sbjct 8 TLKKGFTLIELMIVIAIIAILATIAIPSYQNYTKKAAVSELLQASAPYKADVELCVYSTN 67
Query 45 ELMSKIAEARTQAVTLRQTTGVCLSTVSDCASALSITTNQT--NRVYIAQLEKNVVAG 100
E S A ++ G S ++ + +++ N T N YI Q + N AG
Sbjct 68 ETTSCTGGKNGIAADIKTAKGYVASVITQ-SGGITVKGNGTLANMEYILQAKGNAAAG 124
>P09829 Fimbrial protein [Moraxella nonliquefaciens]
Length=154
Score = 47.0 bits (110), Expect = 4e-11
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M GFTLIEL++ IA+I ILA IA+P++ + +++ + +A+ +++
Sbjct 1 MNAQKGFTLIELMIVIAIIGILAAIALPAYQDYIARAQVSEA-----FTLADGLKTSIST 55
Query 61 RQTTGVCLSTVSD-CASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGI 114
+ G C + D A + I T + + I + N G F G+
Sbjct 56 NRQNGRCFADGKDTAADGVDIITGKYGKATILEENPNTADGLICGIYYEFNTTGV 110
>O30583 Pilin-like competence factor ComP [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=147
Score = 46.6 bits (109), Expect = 5e-11
Identities = 43/153 (28%), Positives = 63/153 (41%), Gaps = 14/153 (9%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLN---ASTRELMSKIAEARTQA 57
M GFTLIEL++ IA+I ILA IA+P++ +++ + + + ++E A
Sbjct 1 MNAQKGFTLIELMIVIAIIGILAAIAIPAYTDYTVRARVSEGLTAASSMKTTVSENILNA 60
Query 58 VTLRQTTGVCLSTVSDCASALSIT-TNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPI 116
L G + S C I+ +N T V A G SA QI ++
Sbjct 61 GAL--VAGTPSTAGSSCVGVQEISASNATTNVATA------TCGASSAGQIIVTMDTTKA 112
Query 117 TTAKFTLTRNGQSRCV--EVGITGDTYYKEGAC 147
A TLT S V + T D Y C
Sbjct 113 KGANITLTPTYASGAVTWKCTTTSDKKYVPSEC 145
>P02973 Fimbrial protein [Pseudomonas aeruginosa]
Length=150
Score = 45.8 bits (107), Expect = 1e-10
Identities = 37/130 (28%), Positives = 62/130 (48%), Gaps = 9/130 (7%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSIL---NNQKLNASTRELMSKIAEARTQA 57
M GFTLIEL++ +A+I ILA IA+P + + + AS L + + EA ++
Sbjct 1 MKAQKGFTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRG 60
Query 58 VTLRQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGI-PI 116
+++ TG +T + ++ N+ + L+ + GT T + F + G P
Sbjct 61 WSVKSGTGTEDATKKEVPLGVAADANKLGTI---ALKPDPADGTADIT-LTFTMGGAGPK 116
Query 117 TTAK-FTLTR 125
K TLTR
Sbjct 117 NKGKIITLTR 126
>P20657 Type IV major alpha-pilin [Moraxella bovis]
Length=159
Score = 44.7 bits (104), Expect = 3e-10
Identities = 33/113 (29%), Positives = 53/113 (47%), Gaps = 10/113 (9%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M GFTLIEL++ IA+I ILA IA+P++ ++ + + EL + + A
Sbjct 1 MNAQKGFTLIELMIVIAIIGILAAIALPAYQDYISKSQTTRVSGELAA--GKTAVDAALF 58
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVV--------AGTGSAT 105
T V S + +T+++T+ + L +V AGT SAT
Sbjct 59 EGKTPVLSEESSTSKENIGLTSSETSTKPRSNLMASVELTGFADNGAGTISAT 111
>Q07564 Fimbrial protein EcpC [Eikenella corrodens]
Length=153
Score = 43.9 bits (102), Expect = 5e-10
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 10/144 (7%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVT-LRQTT 64
GFTLIEL++ IA+I ILA IA+P++ + +++ + +A + AV+
Sbjct 8 GFTLIELMIVIAIIGILAAIALPAYQDYVARSQMSEA-----FNLAGGQKGAVSEYYSDK 62
Query 65 GVCLSTVSDCASALSITTNQTNRVYIAQLEKN-VVAGTGSATQIAFRVEGIPITTAKFTL 123
GV + + A ++ N V ++ N V+ T +T +A V+G T
Sbjct 63 GVWPADNAAAGIAATVNGKYVNSVVVSAAGTNGVITATMKSTGVAKGVQG---KTLALKG 119
Query 124 TRNGQSRCVEVGITGDTYYKEGAC 147
T N S E D Y +C
Sbjct 120 TANDGSFSWECSSNADAKYLPSSC 143
>P36647 Prepilin peptidase-dependent protein D [Escherichia coli
(strain K12)]
Length=146
Score = 43.5 bits (101), Expect = 7e-10
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (6%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M K GFTLIEL+V I +IAIL+ I +P++ + L A+ +++ RT AV L
Sbjct 1 MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLR----KAALTDMLQTFVPYRT-AVEL 55
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTG 102
L T ++ + T T V + K VV+ TG
Sbjct 56 CALEHGGLDTCDGGSNGIPSPTT-TRYVSAMSVAKGVVSLTG 96
>P17838 Fimbrial protein [Pseudomonas aeruginosa]
Length=157
Score = 43.1 bits (100), Expect = 1e-09
Identities = 30/104 (29%), Positives = 51/104 (49%), Gaps = 7/104 (7%)
Query 6 GFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTLRQTTG 65
GFTLIEL++ +A+I ILA IA+P++ +L+ E M+ + +T+ + G
Sbjct 7 GFTLIELMIVVAIIGILAAIAIPAYQDYTARAQLS----ERMTLASGLKTKVSDIFSQDG 62
Query 66 VCLSTVSDCASALSITTNQTNRVYIAQLEK-NVVAGTGSATQIA 108
C + + A T N Y+A++ A +G T +A
Sbjct 63 SCPANTAATAGIEKDT--DINGKYVAKVTTGGTAAASGGCTIVA 104
Score = 14.2 bits (25), Expect = 9.7
Identities = 3/9 (33%), Positives = 7/9 (78%), Gaps = 0/9 (0%)
Query 139 DTYYKEGAC 147
D + ++G+C
Sbjct 56 DIFSQDGSC 64
>P35646 Fimbrial protein EcpB [Eikenella corrodens]
Length=159
Score = 42.7 bits (99), Expect = 1e-09
Identities = 22/48 (46%), Positives = 30/48 (63%), Gaps = 0/48 (0%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMS 48
M K GFTLIEL++ IA+I ILA IA+P + + ++N EL S
Sbjct 1 MYKQKGFTLIELMIVIAIIGILAAIALPLYQDHMAKAQINRVFYELGS 48
>P36643 Fimbrial protein [Pseudomonas putida]
Length=136
Score = 42.4 bits (98), Expect = 2e-09
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 16/128 (13%)
Query 1 MTKMNGFTLIELLVTIAVIAILATIAVPSFNSILNNQKLNASTRELMSKIAEARTQAVTL 60
M G TLIEL++ +A+I ILATIA+P + + + K A E+ A A+ L
Sbjct 1 MKGQRGITLIELMIVVAIIGILATIAIPMYTNHQSRTKAAAGLLEI-----SALKTAMDL 55
Query 61 RQTTGVCLSTVSDCASALSITTNQTNRVYIAQLEKNVVAGTGSATQIAFRVEGIPITTA- 119
R G D A ++ N AGTGS I + P T
Sbjct 56 RLNEG------KDVADVGALGGQPATAHCAITASGNAAAGTGS---IVCTLVDAPATVVG 106
Query 120 -KFTLTRN 126
TLTR+
Sbjct 107 KALTLTRS 114
Lambda K H a alpha
0.322 0.131 0.359 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 152100
Database: 5f8c02885a719d2585c2b5b728852d09.SwissProt.fasta
Posted date: May 9, 2024 5:23 AM
Number of letters in database: 1,652
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
