BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: c1d2782b4f7723456ef2f1a1a88ea5af.SwissProt.fasta
4 sequences; 752 total letters
Query= ACIAD3296
Length=106
Score E
Sequences producing significant alignments: (Bits) Value
P0ADU4 Probable quinol monooxygenase YgiN [Shigella flexneri] 119 1e-40
P0ADU3 Probable quinol monooxygenase YgiN [Escherichia coli O157:H7] 119 1e-40
P0ADU2 Probable quinol monooxygenase YgiN [Escherichia coli (stra... 119 1e-40
A4VKC4 Ribosomal protein uS12 methylthiotransferase RimO [Stutzer... 31.6 4e-06
>P0ADU4 Probable quinol monooxygenase YgiN [Shigella flexneri]
Length=104
Score = 119 bits (298), Expect = 1e-40
Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 0/101 (0%)
Query 1 MITVIAEIRTHTGAEHRQQVLASFEQILPQVLAEVGCYQYQPLIDAPAEASFQRVDYDSI 60
M+TVIAEIRT G HRQ VL F +I+P VL E GC+ Y P++D A SFQ + DSI
Sbjct 1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI 60
Query 61 MMFEQWESVAHLQAHLQTAHMLAHQERVKDHVASVDIRILQ 101
+M EQWES+AHL+AHLQT HM A+ E VK V ++IRILQ
Sbjct 61 VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQ 101
>P0ADU3 Probable quinol monooxygenase YgiN [Escherichia coli O157:H7]
Length=104
Score = 119 bits (298), Expect = 1e-40
Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 0/101 (0%)
Query 1 MITVIAEIRTHTGAEHRQQVLASFEQILPQVLAEVGCYQYQPLIDAPAEASFQRVDYDSI 60
M+TVIAEIRT G HRQ VL F +I+P VL E GC+ Y P++D A SFQ + DSI
Sbjct 1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI 60
Query 61 MMFEQWESVAHLQAHLQTAHMLAHQERVKDHVASVDIRILQ 101
+M EQWES+AHL+AHLQT HM A+ E VK V ++IRILQ
Sbjct 61 VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQ 101
>P0ADU2 Probable quinol monooxygenase YgiN [Escherichia coli (strain
K12)]
Length=104
Score = 119 bits (298), Expect = 1e-40
Identities = 59/101 (58%), Positives = 72/101 (71%), Gaps = 0/101 (0%)
Query 1 MITVIAEIRTHTGAEHRQQVLASFEQILPQVLAEVGCYQYQPLIDAPAEASFQRVDYDSI 60
M+TVIAEIRT G HRQ VL F +I+P VL E GC+ Y P++D A SFQ + DSI
Sbjct 1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSI 60
Query 61 MMFEQWESVAHLQAHLQTAHMLAHQERVKDHVASVDIRILQ 101
+M EQWES+AHL+AHLQT HM A+ E VK V ++IRILQ
Sbjct 61 VMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQ 101
>A4VKC4 Ribosomal protein uS12 methylthiotransferase RimO [Stutzerimonas
stutzeri (strain A1501)]
Length=440
Score = 31.6 bits (70), Expect = 4e-06
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 8/50 (16%)
Query 32 LAEVGCYQYQPLIDAPAEA--------SFQRVDYDSIMMFEQWESVAHLQ 73
L VGC+QY P+ APAEA ++ +D M +Q S A LQ
Sbjct 326 LDRVGCFQYSPVDGAPAEAMNLEPVPDEIKQDRWDRFMAHQQAISAARLQ 375
Score = 22.7 bits (47), Expect = 0.004
Identities = 10/30 (33%), Positives = 17/30 (57%), Gaps = 0/30 (0%)
Query 29 PQVLAEVGCYQYQPLIDAPAEASFQRVDYD 58
P VLA G QY+ +++A E +++D
Sbjct 92 PSVLAVTGPQQYEQVVNAVHEVVPPSIEHD 121
Score = 18.1 bits (35), Expect = 0.17
Identities = 7/34 (21%), Positives = 18/34 (53%), Gaps = 6/34 (18%)
Query 12 TGAEHRQQVLASFEQILPQVLAEVGCYQYQPLID 45
TG + +QV+ + +++P + ++ P +D
Sbjct 98 TGPQQYEQVVNAVHEVVPPSI------EHDPFVD 125
Lambda K H a alpha
0.328 0.134 0.396 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 53792
Database: c1d2782b4f7723456ef2f1a1a88ea5af.SwissProt.fasta
Posted date: May 9, 2024 7:47 PM
Number of letters in database: 752
Number of sequences in database: 4
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
