BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: e020d7fa95b6228de6773e03670b556a.SwissProt.fasta
5 sequences; 1,416 total letters
Query= ACIAD3242
Length=224
Score E
Sequences producing significant alignments: (Bits) Value
P64605 Intermembrane phospholipid transport system binding protei... 94.7 3e-28
P64604 Intermembrane phospholipid transport system binding protei... 94.7 3e-28
P45029 Intermembrane phospholipid transport system binding protei... 83.6 4e-24
C5BRL0 ATP-dependent protease ATPase subunit HslU [Teredinibacter... 35.8 2e-06
Q0VMA5 ATP-dependent protease ATPase subunit HslU [Alcanivorax bo... 34.3 6e-06
>P64605 Intermembrane phospholipid transport system binding protein
MlaD [Escherichia coli O157:H7]
Length=183
Score = 94.7 bits (234), Expect = 3e-28
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 53/225 (24%)
Query 1 MKSRTSELAAGIFVIIFGVALFFLAMKVSGLAGTNLSDPYTMTAQFDNVNGLKPRAKVTM 60
M+++ +E+ GIF++ +A F+ +K + + YT+ A FDN+ GLK R+ V++
Sbjct 1 MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSI 60
Query 61 SGVTIGRVDAITLDPVTRLATVTFDLDGKLTTFNAKQLKTVEQNALEELHYSSDYKSAEP 120
GV +GRV ITLDP T L VT +++
Sbjct 61 GGVVVGRVADITLDPKTYLPRVTLEIE--------------------------------- 87
Query 121 AKQKVMEQQLIDNMKSITSIDEDAYIMVSTNGLLGEKYLKI-----VPGGGLNYLKRGDA 175
+ I + + + + T+GLLGE+YL + P G LK GD
Sbjct 88 --------------QRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDT 133
Query 176 ITNTQGTMDLEDLISKFITGGAGKSSDNS-TGTAAQSSSSEDKEP 219
I +T+ M LEDLI +F+ G G + NS AA ++E EP
Sbjct 134 IQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEP 178
>P64604 Intermembrane phospholipid transport system binding protein
MlaD [Escherichia coli (strain K12)]
Length=183
Score = 94.7 bits (234), Expect = 3e-28
Identities = 66/225 (29%), Positives = 102/225 (45%), Gaps = 53/225 (24%)
Query 1 MKSRTSELAAGIFVIIFGVALFFLAMKVSGLAGTNLSDPYTMTAQFDNVNGLKPRAKVTM 60
M+++ +E+ GIF++ +A F+ +K + + YT+ A FDN+ GLK R+ V++
Sbjct 1 MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYATFDNIGGLKARSPVSI 60
Query 61 SGVTIGRVDAITLDPVTRLATVTFDLDGKLTTFNAKQLKTVEQNALEELHYSSDYKSAEP 120
GV +GRV ITLDP T L VT +++
Sbjct 61 GGVVVGRVADITLDPKTYLPRVTLEIE--------------------------------- 87
Query 121 AKQKVMEQQLIDNMKSITSIDEDAYIMVSTNGLLGEKYLKI-----VPGGGLNYLKRGDA 175
+ I + + + + T+GLLGE+YL + P G LK GD
Sbjct 88 --------------QRYNHIPDTSSLSIRTSGLLGEQYLALNVGFEDPELGTAILKDGDT 133
Query 176 ITNTQGTMDLEDLISKFITGGAGKSSDNS-TGTAAQSSSSEDKEP 219
I +T+ M LEDLI +F+ G G + NS AA ++E EP
Sbjct 134 IQDTKSAMVLEDLIGQFLYGSKGDDNKNSGDAPAAAPGNNETTEP 178
>P45029 Intermembrane phospholipid transport system binding protein
MlaD [Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd)]
Length=167
Score = 83.6 bits (205), Expect = 4e-24
Identities = 61/201 (30%), Positives = 91/201 (45%), Gaps = 52/201 (26%)
Query 7 ELAAGIFVIIFGVALFFLAMKVSGLAGTNLSDPYTMTAQFDNVNGLKPRAKVTMSGVTIG 66
E G+F+++ AL FL ++V+ + G + YT+TA FDN+ GLK RA + + GV IG
Sbjct 8 EFWVGLFLLLGIGALVFLGLRVANVQGFAETKSYTVTATFDNIGGLKVRAPLKIGGVVIG 67
Query 67 RVDAITLDPVTRLATVTFDLDGKLTTFNAKQLKTVEQNALEELHYSSDYKSAEPAKQKVM 126
RV AITLD + L V+ ++
Sbjct 68 RVSAITLDEKSYLPKVSIAIN--------------------------------------- 88
Query 127 EQQLIDNMKSITSIDEDAYIMVSTNGLLGEKYLKIVPG---GGLNYLKRGDAITNTQGTM 183
+ I E++ + + T+GLLGE+Y+ + G G LK G I +T M
Sbjct 89 --------QEYNEIPENSSLSIKTSGLLGEQYIALTMGFDDGDTAMLKNGSQIQDTTSAM 140
Query 184 DLEDLISKFITGGAGKSSDNS 204
LEDLI +F+ G K SD +
Sbjct 141 VLEDLIGQFLYG--SKKSDGN 159
>C5BRL0 ATP-dependent protease ATPase subunit HslU [Teredinibacter
turnerae (strain ATCC 39867 / T7901)]
Length=438
Score = 35.8 bits (81), Expect = 2e-06
Identities = 23/89 (26%), Positives = 45/89 (51%), Gaps = 8/89 (9%)
Query 55 RAKVTMSGVTIGRVDAITLDPVTRLATVTFDLDGKLTTFNAKQLKTVEQNALEELHYSSD 114
+A + GV++ A + D + R+A FD++ + A++L TV + LEE +++D
Sbjct 352 QALLATEGVSL----AFSKDGIRRIAETAFDVNERTENIGARRLHTVLEKLLEEASFNTD 407
Query 115 YKSAEPAKQKVMEQQLIDNMKSITSIDED 143
+S E V++ +D + +ED
Sbjct 408 GESVE----IVVDAAFVDKQLGELATNED 432
Score = 16.2 bits (30), Expect = 3.5
Identities = 5/22 (23%), Positives = 11/22 (50%), Gaps = 0/22 (0%)
Query 86 LDGKLTTFNAKQLKTVEQNALE 107
+DG + F +++ A+E
Sbjct 104 VDGSIKLFREQEMAKCRYRAME 125
>Q0VMA5 ATP-dependent protease ATPase subunit HslU [Alcanivorax
borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689
/ SK2)]
Length=445
Score = 34.3 bits (77), Expect = 6e-06
Identities = 20/74 (27%), Positives = 39/74 (53%), Gaps = 1/74 (1%)
Query 71 ITLDPVTRLATVTFDLDGKLTTFNAKQLKTVEQNALEELHYSSDYKSAE-PAKQKVMEQQ 129
IT D + R+A V + ++ + A++L TV + LEE+ + +D + + K V++ +
Sbjct 366 ITDDCIRRIAEVAWQVNERTENIGARRLHTVLEKLLEEISFDADSLATQYHDKPLVLDAE 425
Query 130 LIDNMKSITSIDED 143
+D + DED
Sbjct 426 AVDRYLGELADDED 439
Score = 16.2 bits (30), Expect = 3.5
Identities = 11/38 (29%), Positives = 16/38 (42%), Gaps = 0/38 (0%)
Query 139 SIDEDAYIMVSTNGLLGEKYLKIVPGGGLNYLKRGDAI 176
S D+ I+ L E+Y ++ GLN D I
Sbjct 334 SPDDFQRILTEPKCSLTEQYKALLETEGLNLEITDDCI 371
Lambda K H a alpha
0.315 0.131 0.355 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 234549
Database: e020d7fa95b6228de6773e03670b556a.SwissProt.fasta
Posted date: May 30, 2024 4:07 AM
Number of letters in database: 1,416
Number of sequences in database: 5
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
