BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: d84b3c4a98cd97449d807dede58d5eae.SwissProt.fasta
           4 sequences; 851 total letters



Query= ACIAD3241

Length=213
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

Q9Z3Z9 Toluene tolerance protein ttg2D [Pseudomonas putida]           108     1e-33
P0ADV8 Intermembrane phospholipid transport system binding protei...  71.6    1e-19
P0ADV7 Intermembrane phospholipid transport system binding protei...  71.6    1e-19
P45028 Intermembrane phospholipid transport system binding protei...  68.6    2e-18


>Q9Z3Z9 Toluene tolerance protein ttg2D [Pseudomonas putida]
Length=215

 Score = 108 bits (271),  Expect = 1e-33
 Identities = 62/197 (31%), Positives = 110/197 (56%), Gaps = 6/197 (3%)

Query  3    MKTLLKQTLTVSVLSSMLIGTAFAAPTEAPPAFIKRVADGLITRLKTDHAKLQNNPAAVK  62
            M ++L++ L V + +  L+  A   P +     ++     L+  LK +  + ++NP A  
Sbjct  1    MISILRRGLLVLLAAFPLLTVAAQTPHDV----VQGTTTELLGDLKANKEQYKSNPNAFY  56

Query  63   AIVRQNLDPYIDSQSFTRIVMGTYATNQNSTAAQRAQFENNFRETLIENYGSAFAKYTNQ  122
              + + L P +D+   ++ +M T   ++ +T  Q  +F+ NF+ +L++ YG+A  +Y NQ
Sbjct  57   DALNRILGPVVDADGISKSIM-TVKYSRKATPEQMQRFQENFKRSLMQFYGNALLEYNNQ  115

Query  123  SYSIRPYKETGSKNPVVTLDFT-NNGEKIPVAFQLTDKGDQWKIRNINVSGIDLGLQFRN  181
              ++ P K    K   V +  T NNG   PV + L + G +WK+RN+ V+GI++G  FR+
Sbjct  116  GITVDPAKADDGKRASVGMKVTGNNGAVYPVQYTLENIGGEWKVRNVIVNGINIGKLFRD  175

Query  182  QFAATVKRNGGNLDKAI  198
            QFA  ++RNG +LDK I
Sbjct  176  QFADAMQRNGNDLDKTI  192


>P0ADV8 Intermembrane phospholipid transport system binding protein 
MlaC [Shigella flexneri]
Length=211

 Score = 71.6 bits (174),  Expect = 1e-19
 Identities = 51/191 (27%), Positives = 89/191 (47%), Gaps = 7/191 (4%)

Query  6    LLKQTLTVSVLSSMLIGTAFAAPTEAPPAFIKRVADGLITRLKTDHAKLQNNPAAVKAIV  65
            + K+ + V++L    +  A AA    P   +   A     RLK +  +++ NP  ++ IV
Sbjct  1    MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIV  60

Query  66   RQNLDPYIDSQSFTRIVMGTYATNQNSTAAQRAQFENNFRETLIENYGSAFAKYTNQSYS  125
             Q L PY+  +    +V+G Y   +++T AQR  +   FRE L + YG A A Y  Q+Y 
Sbjct  61   DQELLPYVQVKYAGALVLGQY--YKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQ  118

Query  126  IRPYKETGSKNPV---VTLDFTNNGEKIPVAFQ--LTDKGDQWKIRNINVSGIDLGLQFR  180
            I P +  G K  V   VT+   N    + + FQ     +   W+  ++   G+ +    +
Sbjct  119  IAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQ  178

Query  181  NQFAATVKRNG  191
            N++   ++  G
Sbjct  179  NEWGTLLRTKG  189


>P0ADV7 Intermembrane phospholipid transport system binding protein 
MlaC [Escherichia coli (strain K12)]
Length=211

 Score = 71.6 bits (174),  Expect = 1e-19
 Identities = 51/191 (27%), Positives = 89/191 (47%), Gaps = 7/191 (4%)

Query  6    LLKQTLTVSVLSSMLIGTAFAAPTEAPPAFIKRVADGLITRLKTDHAKLQNNPAAVKAIV  65
            + K+ + V++L    +  A AA    P   +   A     RLK +  +++ NP  ++ IV
Sbjct  1    MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKNEQPQIRANPDYLRTIV  60

Query  66   RQNLDPYIDSQSFTRIVMGTYATNQNSTAAQRAQFENNFRETLIENYGSAFAKYTNQSYS  125
             Q L PY+  +    +V+G Y   +++T AQR  +   FRE L + YG A A Y  Q+Y 
Sbjct  61   DQELLPYVQVKYAGALVLGQY--YKSATPAQREAYFAAFREYLKQAYGQALAMYHGQTYQ  118

Query  126  IRPYKETGSKNPV---VTLDFTNNGEKIPVAFQ--LTDKGDQWKIRNINVSGIDLGLQFR  180
            I P +  G K  V   VT+   N    + + FQ     +   W+  ++   G+ +    +
Sbjct  119  IAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGNWQAYDMIAEGVSMITTKQ  178

Query  181  NQFAATVKRNG  191
            N++   ++  G
Sbjct  179  NEWGTLLRTKG  189


>P45028 Intermembrane phospholipid transport system binding protein 
MlaC [Haemophilus influenzae (strain ATCC 51907 / DSM 
11121 / KW20 / Rd)]
Length=214

 Score = 68.6 bits (166),  Expect = 2e-18
 Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 8/171 (5%)

Query  10   TLTVSVLSSMLIGTAFAAPTEAPPAFIKRVADGLITRLKTDHAKLQNNPAAVKAIVRQNL  69
            T+   VL++ L+     A T +P   +++ AD L + ++ + +K++ +P  ++ IVR +L
Sbjct  11   TILTFVLTAFLVTRTAIAET-SPYVLMQQAADKLFSDIQANQSKIKQDPNYLRTIVRNDL  69

Query  70   DPYIDSQSFTRIVMGTYATNQNSTAAQRAQFENNFRETLIENYGSAFAKYTNQSYSIRPY  129
             PY++ +     V+G+Y   ++++A QR +F   F E + + Y  A   Y+NQ   I   
Sbjct  70   LPYVNLEYAGSKVLGSY--YKSTSAEQREKFFKTFGELIEQKYAQALTNYSNQKIQIESE  127

Query  130  KETGSKNPV---VTLDFTNNGEKIPVAFQLT--DKGDQWKIRNINVSGIDL  175
            KE G  N +   V +   N    I + F+    +K  +WK+ ++  +G+ +
Sbjct  128  KELGDNNFINIRVNIIQANGVAPILLYFKWRKGNKSGEWKVYDMVGAGVSM  178



Lambda      K        H        a         alpha
   0.318    0.131    0.369    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 132314


  Database: d84b3c4a98cd97449d807dede58d5eae.SwissProt.fasta
    Posted date:  May 19, 2024  8:42 PM
  Number of letters in database: 851
  Number of sequences in database:  4



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40