BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 63bf036d3946792cb618fcca05cc7c76.SwissProt.fasta
11 sequences; 2,375 total letters
Query= ACIAD3236
Length=214
Score E
Sequences producing significant alignments: (Bits) Value
P31773 Competence protein F [Haemophilus influenzae (strain ATCC ... 82.4 6e-23
P46846 DNA utilization protein YhgH [Escherichia coli (strain K12)] 71.6 5e-19
Q83J92 DNA utilization protein YhgH [Shigella flexneri] 71.2 7e-19
Q8FCT3 DNA utilization protein YhgH [Escherichia coli O6:H1 (stra... 70.9 1e-18
Q8X715 DNA utilization protein YhgH [Escherichia coli O157:H7] 70.5 1e-18
Q8Z222 DNA utilization protein YhgH [Salmonella typhi] 67.4 2e-17
Q8ZLI8 DNA utilization protein YhgH [Salmonella typhimurium (stra... 64.7 2e-16
P39147 ComF operon protein 3 [Bacillus subtilis (strain 168)] 53.9 1e-12
A5EVW7 Adenine phosphoribosyltransferase [Dichelobacter nodosus (... 38.1 2e-07
Q985B1 Orotate phosphoribosyltransferase 2 [Mesorhizobium japonic... 35.8 2e-06
Q8TSS8 Hypoxanthine/guanine phosphoribosyltransferase [Methanosar... 35.0 3e-06
>P31773 Competence protein F [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=229
Score = 82.4 bits (202), Expect = 6e-23
Identities = 55/180 (31%), Positives = 95/180 (53%), Gaps = 21/180 (12%)
Query 36 CKDCWQELP-WFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRLHYQSLLSSLLL--- 91
C +C ++ P W K + H Y P+ ++Q+FK+ ++ L+ LL
Sbjct 51 CGNCLKQEPSWDKMVIIGH---------YIEPLSILIQRFKFQNQFWIDRTLARLLYLAV 101
Query 92 -----TLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNVPVWQPVERLAQH-- 144
T L +AI+P+P+ R RGYNQ+ LL+Q +++ L++P + + +H
Sbjct 102 RDAKRTHQLKLPEAIIPVPLYHFRQWRRGYNQADLLSQQLSRWLDIPNLNNIVKRVKHTY 161
Query 145 SQKGLSRLERISQIDEQFIVRQPVKE-RYRRVMIVDDVVTTGSSIHALTHVLQNLGCVHI 203
+Q+GLS +R + F + E YRRV +VDDV+TTGS+++ ++ +L+ LG I
Sbjct 162 TQRGLSAKDRRQNLKNAFSLAVSKNEFPYRRVALVDDVITTGSTLNEISKLLRKLGVEEI 221
>P46846 DNA utilization protein YhgH [Escherichia coli (strain
K12)]
Length=227
Score = 71.6 bits (174), Expect = 5e-19
Identities = 62/199 (31%), Positives = 94/199 (47%), Gaps = 23/199 (12%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ VT +Y P+ ++ Q K+ R
Sbjct 37 CPQCGL-PATHSHLPCGRCLQKPPPWQRLVT--------VADYAPPLSPLIHQLKFSRRS 87
Query 81 HYQSLLSSLLL--------TLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNV 132
S LS LLL T L IV +P+ ++R RG+NQS LL Q +++ L+
Sbjct 88 EIASALSRLLLLEVLHARRTTGLQLPDRIVSVPLWQRRHWRRGFNQSDLLCQPLSRWLHC 147
Query 133 PVW--QPVERL-AQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSSIH 189
W + V R A +Q LS R + F + PV+ R+ ++IVDDVVTTGS++
Sbjct 148 Q-WDSEAVTRTRATATQHFLSARLRKRNLKNAFRLELPVQGRH--MVIVDDVVTTGSTVA 204
Query 190 ALTHVLQNLGCVHIYPVCI 208
+ +L G + C+
Sbjct 205 EIAQLLLRNGAAAVQVWCL 223
>Q83J92 DNA utilization protein YhgH [Shigella flexneri]
Length=227
Score = 71.2 bits (173), Expect = 7e-19
Identities = 61/199 (31%), Positives = 94/199 (47%), Gaps = 23/199 (12%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ VT +Y P+ ++ Q K+ R
Sbjct 37 CPQCGL-PATHSHLPCGRCLQKPPPWQRLVT--------VADYAPPLSPLIHQLKFSRRS 87
Query 81 HYQSLLSSLLL--------TLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNV 132
S LS LLL T L I+ +P+ ++R RG+NQS LL Q +++ L+
Sbjct 88 EIASALSRLLLLEVLHARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHC 147
Query 133 PVW--QPVERL-AQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSSIH 189
W + V R A +Q LS R + F + PV+ R+ ++IVDDVVTTGS++
Sbjct 148 Q-WDSEAVTRTRATATQHFLSARLRKRNLKNAFRLELPVQGRH--MVIVDDVVTTGSTVA 204
Query 190 ALTHVLQNLGCVHIYPVCI 208
+ +L G + C+
Sbjct 205 EIAQLLLRNGAATVQVWCL 223
>Q8FCT3 DNA utilization protein YhgH [Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC)]
Length=227
Score = 70.9 bits (172), Expect = 1e-18
Identities = 61/199 (31%), Positives = 94/199 (47%), Gaps = 23/199 (12%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ VT +Y P+ ++ Q K+ R
Sbjct 37 CPQCGL-PATHSHLPCGRCLQKPPPWQRLVT--------VADYAPPLSPLIHQLKFSRRS 87
Query 81 HYQSLLSSLLL--------TLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNV 132
S LS LLL T L I+ +P+ ++R RG+NQS LL Q +++ L+
Sbjct 88 EIASALSRLLLLEVLHARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHC 147
Query 133 PVW--QPVERL-AQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSSIH 189
W + V R A +Q LS R + F + PV+ R+ ++IVDDVVTTGS++
Sbjct 148 R-WDSEAVTRTRATATQHFLSARLRKRNLKNAFRLELPVQGRH--MVIVDDVVTTGSTVA 204
Query 190 ALTHVLQNLGCVHIYPVCI 208
+ +L G + C+
Sbjct 205 EIAQLLLRNGAATVQVWCL 223
>Q8X715 DNA utilization protein YhgH [Escherichia coli O157:H7]
Length=227
Score = 70.5 bits (171), Expect = 1e-18
Identities = 59/199 (30%), Positives = 91/199 (46%), Gaps = 23/199 (12%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ VT +Y P+ ++ Q K+ R
Sbjct 37 CPQCGL-PATHSHLPCGRCLQKPPPWQRLVT--------VADYAPPLSLLIHQLKFSRRS 87
Query 81 HYQSLLSSLLL--------TLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNV 132
S LS LLL T L I+ +P+ ++R RG+NQS LL Q +++ L+
Sbjct 88 EIASALSRLLLLEVLHARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHC 147
Query 133 PVWQP---VERLAQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSSIH 189
W A +Q LS R + F + PV+ R+ ++IVDDVVTTGS++
Sbjct 148 Q-WDSEAITRTRATATQHFLSARLRRRNLKNAFRLELPVQGRH--MVIVDDVVTTGSTVA 204
Query 190 ALTHVLQNLGCVHIYPVCI 208
+ +L G + C+
Sbjct 205 EIAQLLLRNGAATVQVWCL 223
>Q8Z222 DNA utilization protein YhgH [Salmonella typhi]
Length=227
Score = 67.4 bits (163), Expect = 2e-17
Identities = 61/201 (30%), Positives = 94/201 (47%), Gaps = 27/201 (13%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ +++ +Y P+ +V Q K+ R
Sbjct 37 CPQCGL-PAGHPSLPCGRCLQKPPPWQ--------RLVSVSDYTPPLSLLVHQLKFTRRS 87
Query 81 HYQSLLSSLLLT----------LPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHL 130
+ L+ LLL LPLP IV +P+ +R RG+NQS LL Q +A L
Sbjct 88 EIAAALARLLLQEVLMARRSTGLPLP--DRIVSVPLWSRRHWRRGFNQSDLLCQPLAHWL 145
Query 131 NVPVW--QPVERL-AQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSS 187
W Q + R+ A +Q LS R + F + PV+ + ++IVDDVVTTGS+
Sbjct 146 GC-AWDSQTITRVRATATQHHLSARLRKRNLKNAFRLELPVQGLH--MVIVDDVVTTGST 202
Query 188 IHALTHVLQNLGCVHIYPVCI 208
+ + +L G + C+
Sbjct 203 VAEIAQLLLRNGAATVQVWCL 223
>Q8ZLI8 DNA utilization protein YhgH [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=227
Score = 64.7 bits (156), Expect = 2e-16
Identities = 60/201 (30%), Positives = 93/201 (46%), Gaps = 27/201 (13%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CP C L P + C C Q+ P ++ +++ +Y P+ +V Q K+ R
Sbjct 37 CPQCGL-PAAHPSLPCGRCLQKPPPWQ--------RLVSVSDYTPPLSLLVHQLKFTRRS 87
Query 81 HYQSLLSSLLLT----------LPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHL 130
+ L+ LLL L LP IV +P+ +R RG+NQS LL Q +A L
Sbjct 88 EIAAALARLLLQEVLMARRSTGLQLP--DRIVSVPLWSRRHWRRGFNQSDLLCQPLAHWL 145
Query 131 NVPVW--QPVERL-AQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSS 187
W Q + R+ A +Q LS R + F + PV+ + ++IVDDVVTTGS+
Sbjct 146 GC-AWDSQTITRVRATATQHHLSARLRKRNLKNAFRLELPVQGLH--MVIVDDVVTTGST 202
Query 188 IHALTHVLQNLGCVHIYPVCI 208
+ + +L G + C+
Sbjct 203 VAEIAQLLLRNGAATVQVWCL 223
>P39147 ComF operon protein 3 [Bacillus subtilis (strain 168)]
Length=229
Score = 53.9 bits (128), Expect = 1e-12
Identities = 45/183 (25%), Positives = 82/183 (45%), Gaps = 14/183 (8%)
Query 21 CPLCELSPQQKQQILCKDCWQELPWFKDYVTRHELNILAACEYRYPIDQIVQQFKYHDRL 80
CPLC Q +C+DC +D + + + Y + + + +FK+
Sbjct 44 CPLC--GRPQSVHAVCRDCEVWRTRIRDSLLLRQNR--SVYTYNDMMKETLSRFKFRGDA 99
Query 81 H----YQSLLSSLLLTLPLPRVQAIVPMPISEKRLIERGYNQSLLLAQSIAKHLNVPVWQ 136
++S SS + + +VP+P+S++R ERG+NQ+ LLA+ L+ P
Sbjct 100 EIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAEC----LDRPSHH 155
Query 137 PVERLAQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIVDDVVTTGSSIHALTHVLQ 196
P+ RL Q + ER+ + E + ++++DD+ TTG+++H L
Sbjct 156 PLIRLNNEKQSKKKKTERL--LSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLL 213
Query 197 NLG 199
G
Sbjct 214 EKG 216
>A5EVW7 Adenine phosphoribosyltransferase [Dichelobacter nodosus
(strain VCS1703A)]
Length=174
Score = 38.1 bits (87), Expect = 2e-07
Identities = 26/87 (30%), Positives = 47/87 (54%), Gaps = 11/87 (13%)
Query 118 QSLLLAQSIAKHLNV---PVWQP--VERLAQHSQKGLSRLERISQIDEQFIVRQPVKERY 172
+ + A ++A L + P+ +P + R H GL E ++ +Q I ++
Sbjct 62 RGFIFAAALAHRLGIGFIPLRKPHKLPREVAHINYGLEYGEDCLEVHKQDI------KKG 115
Query 173 RRVMIVDDVVTTGSSIHALTHVLQNLG 199
R+M+VDDV+ TG ++HA ++LQ+LG
Sbjct 116 MRIMMVDDVLATGGTMHACMNLLQSLG 142
>Q985B1 Orotate phosphoribosyltransferase 2 [Mesorhizobium japonicum
(strain LMG 29417 / CECT 9101 / MAFF 303099)]
Length=192
Score = 35.8 bits (81), Expect = 2e-06
Identities = 31/90 (34%), Positives = 41/90 (46%), Gaps = 20/90 (22%)
Query 120 LLLAQSIAKHLNVP-VWQPVERLAQHSQKGLSRLERISQIDEQFIVRQPVKERYRRVMIV 178
L+ A ++HL VP +W VER + G RL R R RV+IV
Sbjct 75 LIPAYETSRHLGVPAIW--VER-----EGGEFRLRRFEIA------------RGARVVIV 115
Query 179 DDVVTTGSSIHALTHVLQNLGCVHIYPVCI 208
+D+VTTG SI L+ LG + CI
Sbjct 116 EDIVTTGLSIRETIECLRELGAEVVAAACI 145
>Q8TSS8 Hypoxanthine/guanine phosphoribosyltransferase [Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185
/ C2A)]
Length=189
Score = 35.0 bits (79), Expect = 3e-06
Identities = 15/26 (58%), Positives = 21/26 (81%), Gaps = 0/26 (0%)
Query 174 RVMIVDDVVTTGSSIHALTHVLQNLG 199
RV+IVDDV++TG ++ AL LQN+G
Sbjct 116 RVVIVDDVISTGGTLLALVKALQNMG 141
Lambda K H a alpha
0.328 0.139 0.440 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 348336
Database: 63bf036d3946792cb618fcca05cc7c76.SwissProt.fasta
Posted date: May 9, 2024 6:31 AM
Number of letters in database: 2,375
Number of sequences in database: 11
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
