BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 3801f6e052c3927e909b2d941197c185.SwissProt.fasta
17 sequences; 12,898 total letters
Query= ACIAD3235
Length=687
Score E
Sequences producing significant alignments: (Bits) Value
Q8XD86 ATP-dependent DNA helicase RecG [Escherichia coli O157:H7] 723 0.0
P24230 ATP-dependent DNA helicase RecG [Escherichia coli (strain ... 721 0.0
B7UM74 ATP-dependent DNA helicase RecG [Escherichia coli O127:H6 ... 719 0.0
Q9CMB4 ATP-dependent DNA helicase RecG [Pasteurella multocida (st... 710 0.0
P43809 ATP-dependent DNA helicase RecG [Haemophilus influenzae (s... 702 0.0
Q55681 ATP-dependent DNA helicase RecG [Synechocystis sp. (strain... 473 7e-160
O34942 ATP-dependent DNA helicase RecG [Bacillus subtilis (strain... 434 2e-146
O67837 ATP-dependent DNA helicase RecG [Aquifex aeolicus (strain ... 429 5e-143
Q54900 ATP-dependent DNA helicase RecG [Streptococcus pneumoniae ... 422 4e-142
P96130 ATP-dependent DNA helicase RecG [Treponema pallidum (strai... 403 2e-134
O50581 ATP-dependent DNA helicase RecG [Staphylococcus aureus (st... 396 8e-132
O50224 ATP-dependent DNA helicase RecG [Acidithiobacillus ferroox... 312 5e-100
P30958 Transcription-repair-coupling factor [Escherichia coli (st... 245 3e-72
P9WMQ5 Transcription-repair-coupling factor [Mycobacterium tuberc... 224 8e-65
Q9DF35 Nucleolar RNA helicase 2-A [Xenopus laevis] 55.5 9e-11
Q9DF36 Nucleolar RNA helicase 2-B [Xenopus laevis] 55.1 1e-10
Q55804 RNA helicase CrhR [Synechocystis sp. (strain PCC 6803 / Ka... 54.7 1e-10
>Q8XD86 ATP-dependent DNA helicase RecG [Escherichia coli O157:H7]
Length=693
Score = 723 bits (1865), Expect = 0.0
Identities = 376/685 (55%), Positives = 485/685 (71%), Gaps = 5/685 (1%)
Query 5 DMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEG 64
D + L GVG A ++ L K+N+ T DLL HLP YEDR+ + + +L+ G +EG
Sbjct 7 DAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEG 66
Query 65 EIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGL 124
E+ + + G R+ + + D G +T+RF++ + + L +G+R+ +GE + G G
Sbjct 67 EVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAAMKNSLATGRRVLAYGEAKRGKYGA 126
Query 125 EMYHPEIQVIHDY-TPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSD-NLPELLPKQ 182
EM HPE +V D TP + LT +YP+TEG+ Q LR+ QAL + ELLP +
Sbjct 127 EMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPE 186
Query 183 FTNGYV-LKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQI 241
+ G + L EAL +H PP + L G HPAQ+RLI EEL+AH +S+L RA ++
Sbjct 187 LSQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRF 246
Query 242 ASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVA 301
+ + L LLA LPF+ T AQ RV EI D+ PM+RLVQGDVG+GKTLVA
Sbjct 247 HAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVA 306
Query 302 AIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEEL 361
A+AA A+ G QVALMAPTE+LAEQH NF+ WFEPL I+VGWL+GKQKGKAR +E
Sbjct 307 ALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGIEVGWLAGKQKGKARLSQQEA 366
Query 362 IRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDH-FTPHQLVM 420
I +GQVQ+++GTHA+FQ+ V+F L LVIIDEQHRFGV QRLAL KG F PHQL+M
Sbjct 367 IASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIM 426
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCL-EGKQA 479
TATPIPRTLAM+AY DLDTSVIDELPPGRTP+ TV IP RR ++I+R+ C+ EG+QA
Sbjct 427 TATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQA 486
Query 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
YWVCTL+E+SE L+AQAAEAT++E++ PEL VGLVHG+MK EKQ VM +FK +L L
Sbjct 487 YWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHL 546
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
L+ATTVIEVGVDVPNAS+M+IEN ERLGL+QLHQLRGRVGRGA AS CVLLYK PLS+
Sbjct 547 LVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTA 606
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
Q RL +LR+SNDGFVIA+KDLE+RGPGELLGT+QTG+ F+VA L RD ++ + +A
Sbjct 607 QIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLAR 666
Query 660 QVLKDHAQQAEALLNRWLPDAPRYA 684
+ + + QQA+AL+ RW+P+ RY+
Sbjct 667 HIHERYPQQAKALIERWMPETERYS 691
>P24230 ATP-dependent DNA helicase RecG [Escherichia coli (strain
K12)]
Length=693
Score = 721 bits (1862), Expect = 0.0
Identities = 376/685 (55%), Positives = 485/685 (71%), Gaps = 5/685 (1%)
Query 5 DMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEG 64
D + L GVG A ++ L K+N+ T DLL HLP YEDR+ + + +L+ G +EG
Sbjct 7 DAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEG 66
Query 65 EIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGL 124
E+ + + G R+ + + D G +T+RF++ + + L +G+R+ +GE + G G
Sbjct 67 EVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAAMKNSLAAGRRVLAYGEAKRGKYGA 126
Query 125 EMYHPEIQVIHDY-TPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSD-NLPELLPKQ 182
EM HPE +V D TP + LT +YP+TEG+ Q LR+ QAL + ELLP +
Sbjct 127 EMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPE 186
Query 183 FTNGYV-LKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQI 241
+ G + L EAL +H PP + L G HPAQ+RLI EEL+AH +S+L RA ++
Sbjct 187 LSQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRF 246
Query 242 ASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVA 301
+ + TL LLA LPF+ T AQ RV EI D+ PM+RLVQGDVG+GKTLVA
Sbjct 247 HAQPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVA 306
Query 302 AIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEEL 361
A+AA A+ G QVALMAPTE+LAEQH NF+ WF PL I+VGWL+GKQKGKAR +E
Sbjct 307 ALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEA 366
Query 362 IRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDH-FTPHQLVM 420
I +GQVQ+++GTHA+FQ+ V+F L LVIIDEQHRFGV QRLAL KG F PHQL+M
Sbjct 367 IASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIM 426
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCL-EGKQA 479
TATPIPRTLAM+AY DLDTSVIDELPPGRTP+ TV IP RR ++I+R+ C+ EG+QA
Sbjct 427 TATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRTDIIDRVHHACITEGRQA 486
Query 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
YWVCTL+E+SE L+AQAAEAT++E++ PEL VGLVHG+MK EKQ VM +FK +L L
Sbjct 487 YWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHL 546
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
L+ATTVIEVGVDVPNAS+M+IEN ERLGL+QLHQLRGRVGRGA AS CVLLYK PLS+
Sbjct 547 LVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTA 606
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
Q RL +LR+SNDGFVIA+KDLE+RGPGELLGT+QTG+ F+VA L RD ++ + +A
Sbjct 607 QIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLAR 666
Query 660 QVLKDHAQQAEALLNRWLPDAPRYA 684
+ + + QQA+AL+ RW+P+ RY+
Sbjct 667 HIHERYPQQAKALIERWMPETERYS 691
>B7UM74 ATP-dependent DNA helicase RecG [Escherichia coli O127:H6
(strain E2348/69 / EPEC)]
Length=693
Score = 719 bits (1857), Expect = 0.0
Identities = 375/685 (55%), Positives = 484/685 (71%), Gaps = 5/685 (1%)
Query 5 DMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEG 64
D + L GVG A ++ L K+N+ T DLL HLP YEDR+ + + +L+ G +EG
Sbjct 7 DAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATVEG 66
Query 65 EIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGL 124
E+ + + G R+ + + D G +T+RF++ + + L +G+R+ +GE + G G
Sbjct 67 EVLNCNISFGSRRMMTCQISDGSGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGA 126
Query 125 EMYHPEIQVIHDY-TPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSD-NLPELLPKQ 182
EM HPE +V D TP + LT +YP+TEG+ Q LR+ QAL + ELLP +
Sbjct 127 EMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPE 186
Query 183 FTNGYV-LKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQI 241
+ G + L EAL +H PP + L G HPAQ+RLI EEL+AH +S+L RA ++
Sbjct 187 LSQGMMTLPEALRTLHRPPPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRAGAQRF 246
Query 242 ASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVA 301
+ + L LLA LPF+ T AQ RV EI D+ PM+RLVQGDVG+GKTLVA
Sbjct 247 HAQPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVA 306
Query 302 AIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEEL 361
A+AA A+ G QVALMAPTE+LAEQH NF+ WF PL I+VGWL+GKQKGKAR +E
Sbjct 307 ALAALRAVAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEA 366
Query 362 IRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDH-FTPHQLVM 420
I +GQVQ+++GTHA+FQ+ V+F L LVIIDEQHRFGV QRLAL KG F PHQL+M
Sbjct 367 IASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIM 426
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCL-EGKQA 479
TATPIPRTLAM+AY DLDTSVIDELPPGRTP+ TV IP RR ++I+R+ C+ EG+QA
Sbjct 427 TATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRIDIIDRVRHACMTEGRQA 486
Query 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
YWVCTL+E+SE L+AQAAEAT++E++ PEL VGLVHG+MK EKQ VM +FK +L L
Sbjct 487 YWVCTLIEESELLEAQAAEATWEELKLALPELNVGLVHGRMKPAEKQAVMTSFKQGELHL 546
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
L+ATTVIEVGVDVPNAS+M+IEN ERLGL+QLHQLRGRVGRGA AS CVLLYK PLS+
Sbjct 547 LVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTA 606
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
Q RL +LR+SNDGFVIA+KDLE+RGPGELLGT+QTG+ F+VA L RD ++ + +A
Sbjct 607 QIRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLAR 666
Query 660 QVLKDHAQQAEALLNRWLPDAPRYA 684
+ + + QQA+AL+ RW+P+ RY+
Sbjct 667 HIHERYPQQAKALIERWMPETERYS 691
>Q9CMB4 ATP-dependent DNA helicase RecG [Pasteurella multocida
(strain Pm70)]
Length=693
Score = 710 bits (1833), Expect = 0.0
Identities = 373/688 (54%), Positives = 484/688 (70%), Gaps = 7/688 (1%)
Query 5 DMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEG 64
D + L GVG A + L ++ I DLLFHLP YEDR+ + ++ L +EG
Sbjct 7 DAVPLTTLSGVGAAISDKLGRIGIHNLQDLLFHLPIRYEDRTRITPIHDLRPDAYATIEG 66
Query 65 EIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGL 124
+++ + GKR + L D K+ LRF++ G+ + L+ G R++ FGEV+ G
Sbjct 67 LVQTCEVQFGKRPILNVSLSDGTSKIMLRFFNFNAGMKNSLQPGARVKAFGEVKRGRFMA 126
Query 125 EMYHPEIQVIHDYTPLPKTQ-LTAIYPSTEGLTQPKLREYIKQALKQYSD-NLPELLPKQ 182
E++HPE Q+I D PL + LT IY +TEG+ Q LR+ QAL + + E+LP +
Sbjct 127 EIHHPEYQIIRDNAPLILEETLTPIYSTTEGIKQNSLRKLTDQALAVLENIQIAEILPNE 186
Query 183 FT-NGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQI 241
F + + LKEA+ ++H PP + +++ L G+HPAQQRLIFEEL+AH +++ R +Q
Sbjct 187 FNPHPFSLKEAIRFLHRPPPDVSLEALEKGTHPAQQRLIFEELLAHNLAMQKVRIGTQQF 246
Query 242 ASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVA 301
++ L + LAQLPF T AQ RV++EI DL PM+RLVQGDVG+GKTLVA
Sbjct 247 SAYPLSYQTDLKQRFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDVGSGKTLVA 306
Query 302 AIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEEL 361
A+AA A++ G QVALMAPTEILAEQH NF+RWFE L I+VGWL+GK KGKAR E
Sbjct 307 ALAALLAIDNGKQVALMAPTEILAEQHATNFRRWFESLGIEVGWLAGKVKGKARQTELEK 366
Query 362 IRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKG--VDHFTPHQLV 419
IRTGQVQ+V+GTHALFQD VEF+ L LVI+DEQHRFGV QRL LR KG DH+ PHQL+
Sbjct 367 IRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQHRFGVHQRLMLREKGKQADHY-PHQLI 425
Query 420 MTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCL-EGKQ 478
MTATPIPRTLAM+ Y DLDTS+IDELPPGRTPI TV I +RR EVI R+ C+ E +Q
Sbjct 426 MTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEERRAEVIARVNHACVNEKRQ 485
Query 479 AYWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQ 538
AYWVCTL+++SE L+AQAAEA +++R P L++GLVHG+MK EKQ++MQAFK ++
Sbjct 486 AYWVCTLIDESEVLEAQAAEAIAEDLRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEID 545
Query 539 LLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQN 598
LL+ATTVIEVGVDVPNAS+M+IENAERLGLSQLHQLRGRVGRG ASFCVL+YK PL +
Sbjct 546 LLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYKPPLGKI 605
Query 599 GQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVA 658
Q+RL +LR++ DGFVI+EKDLE+RGPGE+LGTKQTG F+VA L RD ++ Y A
Sbjct 606 SQKRLQVLRDTQDGFVISEKDLEIRGPGEVLGTKQTGVAEFKVANLMRDRKMIPTVQYYA 665
Query 659 EQVLKDHAQQAEALLNRWLPDAPRYAYV 686
+++ + + A L+ RW+ Y +V
Sbjct 666 RRLIVEQPEVATKLIQRWINQREIYTHV 693
>P43809 ATP-dependent DNA helicase RecG [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=693
Score = 702 bits (1813), Expect = 0.0
Identities = 365/685 (53%), Positives = 482/685 (70%), Gaps = 5/685 (1%)
Query 5 DMTSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEG 64
D + L GVG A ++ L K+ I DLLFHLP YEDR+ + + L + + +EG
Sbjct 7 DAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITLIANLRPEQYFTIEG 66
Query 65 EIKSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGL 124
+++ + G+R ++ L D K+ LRF++ G+ + + G R++ FGEV+ G
Sbjct 67 IVQTCEVAFGRRPILSVSLSDGTSKIMLRFFNFNAGMRNSFQVGVRVKAFGEVKRGRHMP 126
Query 125 EMYHPEIQVIHDYTPLPKTQ-LTAIYPSTEGLTQPKLREYIKQALKQYSD-NLPELLPKQ 182
E++HPE Q++ D P+ + LT IY +TEGL Q LR+ QAL + E+LP +
Sbjct 127 EIHHPEYQIVRDNAPIVLEETLTPIYSTTEGLKQNSLRKLTDQALALLDKVQIAEILPNE 186
Query 183 FT-NGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQI 241
F + Y LKEAL +H PP + +++ L G HPAQQRLIFEEL+AH +++ R +Q
Sbjct 187 FNPHQYSLKEALRLLHRPPPDISLEMLEQGKHPAQQRLIFEELLAHNLAMQKVRLGTQQF 246
Query 242 ASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVA 301
++ L + LA LPFQ T+AQKRV +I DL + PM+RLVQGDVG+GKTLVA
Sbjct 247 SALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVA 306
Query 302 AIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEEL 361
A+AA A++ G QVALMAPTEILAEQH NF+RWF+P I+VGWL+GK KGK+R E
Sbjct 307 ALAALTAIDNGKQVALMAPTEILAEQHANNFRRWFKPFGIEVGWLAGKVKGKSRQAELEK 366
Query 362 IRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDH-FTPHQLVM 420
I+TG VQ+V+GTHALFQ+ VEF+ L LVIIDEQHRFGV QRL LR KG F PHQL+M
Sbjct 367 IKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQRLMLREKGEKAGFYPHQLIM 426
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCL-EGKQA 479
TATPIPRTLAM+ Y DLDTS+IDELPPGRTPI TV + +RR E++ R+ + C+ E +QA
Sbjct 427 TATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVVVSEERRAEIVMRVKNACVNEKRQA 486
Query 480 YWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
YWVCTL+++SE L+AQAAEA ++++ P L +GLVHG+MK +EKQ+VM FK+ +L L
Sbjct 487 YWVCTLIDESEVLEAQAAEAIWEDLTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDL 546
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
L+ATTVIEVGVDVPNAS+M+IENAERLGLSQLHQLRGRVGRG ASFCVL+YK PL +
Sbjct 547 LVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYKPPLGKVS 606
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
Q+RL +LR+S DGFVI+EKDLE+RGPGE+LGTKQTG RVA L RD ++ + A+
Sbjct 607 QKRLQVLRDSQDGFVISEKDLEIRGPGEVLGTKQTGIAELRVANLMRDRKMIPTVQHYAK 666
Query 660 QVLKDHAQQAEALLNRWLPDAPRYA 684
+++ + AE+L+ RWL + Y+
Sbjct 667 SLIQKYPDVAESLIRRWLNNKEIYS 691
Score = 20.4 bits (41), Expect = 5.5
Identities = 8/35 (23%), Positives = 16/35 (46%), Gaps = 0/35 (0%)
Query 158 PKLREYIKQALKQYSDNLPELLPKQFTNGYVLKEA 192
P ++ Y K +++Y D L+ + N + A
Sbjct 659 PTVQHYAKSLIQKYPDVAESLIRRWLNNKEIYSNA 693
>Q55681 ATP-dependent DNA helicase RecG [Synechocystis sp. (strain
PCC 6803 / Kazusa)]
Length=831
Score = 473 bits (1218), Expect = 7e-160
Identities = 281/663 (42%), Positives = 407/663 (61%), Gaps = 34/663 (5%)
Query 22 LLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEIKSLD-FPAGKRKSVA 80
LL+ L + T +DLLF+ PRDY D + + + +L G + + G + + F + K +++
Sbjct 151 LLKNLGLATVEDLLFYFPRDYLDYAQQVTIAELTAGETVTIVGRVVNCTCFTSPKNQNLN 210
Query 81 AL---LQDDCGKVTL-RFY----HIYKGLTDKLKS----GQRLRVFGEVRVGARGLEMYH 128
L L+D G++ L RFY ++G +K+K + G V+ GL + +
Sbjct 211 ILQIQLRDQTGRIKLSRFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKSSKFGLTLDN 270
Query 129 PEIQVIHDYTPLPKT----QLTAIYPSTEGLTQPKLREYI---KQALKQYSDNLPELLPK 181
PEI+V+ ++P + ++ +YP TEG+T LR+ + + A+ + SD LP+ + +
Sbjct 271 PEIEVLDRHSPSIDSFKVGRVLPVYPLTEGITADFLRKLVLACQTAIAKLSDPLPQEIRE 330
Query 182 QFTNGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRR-AYIRQ 240
++ L+ A+ IH P N ++L+L A++RL+F+E Q+ L RR +Q
Sbjct 331 KYEL-IDLQTAIAQIHFPE---NTEKLSL----ARRRLVFDEFFYLQLGFLQRRYEQKQQ 382
Query 241 IASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLV 300
S F P L + LPF++T AQ+RV EI DL++ PM RLVQGDVG+GKT+V
Sbjct 383 QQSAIFTPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGSGKTVV 442
Query 301 AAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEE 360
A AL+ G+Q ALMAPTE+LAEQHY WF L + V L+G K R +
Sbjct 443 GVFAILAALQGGYQAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGSTKTAKRREIHA 502
Query 361 LIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLVM 420
+ TGQ+ L++GTHAL Q+ V F +LGLV+IDEQHRFGV QR L KG PH L M
Sbjct 503 QLSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKG---NAPHVLSM 559
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAY 480
TATPIPRTLA++ +GDL+ S IDELPPGR PI T I R ++ I +G+Q Y
Sbjct 560 TATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGRQVY 619
Query 481 WVCTLVEQSETLDAQAAEATYQEIRSR-FPELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
+ +E+SE LD +AA ++ + + FP +GL+HG++K+ EK+ + AF++ Q ++
Sbjct 620 IIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEI 679
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
+++TTVIEVGVDVPNA++MVIENAER GLSQLHQLRGRVGRG+ S+C LL + S +
Sbjct 680 IVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYC-LLVTNSKSNDA 738
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
++RL ++ +S DGF IAE DL LRGPGE LGTKQ+G +F +A L D +L+ A AE
Sbjct 739 RQRLGVMEQSQDGFFIAEMDLRLRGPGEFLGTKQSGLPDFALASLVEDQEVLLLAREAAE 798
Query 660 QVL 662
++
Sbjct 799 TMM 801
>O34942 ATP-dependent DNA helicase RecG [Bacillus subtilis (strain
168)]
Length=682
Score = 434 bits (1115), Expect = 2e-146
Identities = 265/669 (40%), Positives = 386/669 (58%), Gaps = 28/669 (4%)
Query 7 TSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEI 66
TS+ +++G+G L +L I+ DLL + P Y+D + + ++ +EG++
Sbjct 7 TSIANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDDYE-LRDLEEVKHDERVTVEGKV 65
Query 67 KS---LDFPAGKRKSVAALLQDDCGKVT-LRFYHIYKGLTDKLKSGQRLRVFGEVRVGAR 122
S L + KR + L +T + F Y L KL G + V G+ +
Sbjct 66 HSEPSLTYYGKKRNRLTFRLLVGHYLITAVCFNRPY--LKKKLSLGSVVTVSGKWDKHRQ 123
Query 123 GLEMYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLPELLPKQ 182
+ +Q + + + +Y E +T +R +I+QAL QY+D+LP+ LP++
Sbjct 124 TIS-----VQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFIQQALTQYADSLPDPLPEK 178
Query 183 FTNGYVLKE---ALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLT-RRAYI 238
Y L + AL +H+P ++ A++R ++EE + Q+ + R+A
Sbjct 179 LRKSYKLPDYYQALKAMHQPETREALKL-------ARRRFVYEEFLLFQLKMQAFRKAER 231
Query 239 RQIASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKT 298
Q + S + LPF +T+AQ RV +EI D+ M RL+QGDVG+GKT
Sbjct 232 EQTQGIRQRFSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKT 291
Query 299 LVAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQA 358
VAAIA A+ +G+Q ALM PTEILAEQH + FE + V L+ KGK R +
Sbjct 292 AVAAIALYAAILSGYQGALMVPTEILAEQHADSLVSLFEKWDVSVALLTSSVKGKRRKEL 351
Query 359 EELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQL 418
E + G++ +++GTHAL QD VEF L LVI DEQHRFGV+QR LRNKG D P L
Sbjct 352 LERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNKGQD---PDVL 408
Query 419 VMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQ 478
MTATPIPRTLA++ +G++D SVIDE+P GR I+T + D + ++ + +G+Q
Sbjct 409 FMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQ 468
Query 479 AYWVCTLVEQSETLDAQAAEATYQEIRSRF-PELKVGLVHGKMKAEEKQNVMQAFKDNQL 537
AY +C L+E+S+ LD Q A Y + F + VGL+HGK+ ++EK VM+ F N
Sbjct 469 AYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHC 528
Query 538 QLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQ 597
Q+L++TTV+EVGV+VPNA+IMVI +A+R GLSQLHQLRGRVGRG SFC+L+ P S+
Sbjct 529 QILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILM-ADPKSE 587
Query 598 NGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYV 657
G+ER+ I+ E+NDGF ++EKDLELRGPG+ G KQ+G F+VA + D L A
Sbjct 588 TGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRALETARQD 647
Query 658 AEQVLKDHA 666
A ++ A
Sbjct 648 AANLVASDA 656
>O67837 ATP-dependent DNA helicase RecG [Aquifex aeolicus (strain
VF5)]
Length=792
Score = 429 bits (1102), Expect = 5e-143
Identities = 260/668 (39%), Positives = 386/668 (58%), Gaps = 34/668 (5%)
Query 21 SLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEIKSLDFPAGKRKSVA 80
S L+ L I T D LF+ P YED+ ++ VG L+ ++K + +R ++
Sbjct 109 STLKALGIETVYDALFYFPEKYEDKRLNTSIKTAKVGEKVALKVKVKEVKIKENERYTLE 168
Query 81 ALLQDDCGKVTLRFYHIYKGLTDKLKS---GQRLRVFGEVRVGARGLEMYHPEIQ----- 132
+ D G +TL++ YK LK+ G + V+G+++ M HPE++
Sbjct 169 VVCTDGTGYITLKYR--YKNPHFALKAFRKGMEIVVYGKLKSFKGEKYMVHPEVKSPSSE 226
Query 133 ----VIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNL----PELLPKQFT 184
+I Y + +L I T+ ++ ++ AL S++L PE +P
Sbjct 227 ELGKIIPVYYVRKRGELQEISSKTK-------QKRVRTALTALSESLYRYFPEYMPDYLI 279
Query 185 NGYVLKEALHYIHE--PPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQIA 242
Y + I E P + ++ L + +R+I++EL Q++LL ++ I++
Sbjct 280 EKYNFPDIALCIKELHNPKDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQEIKKEK 339
Query 243 SPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVAA 302
+PK + + + +LPF++T AQ+R KEI DL + PM RL+QGDVG+GKT+VA
Sbjct 340 APKVNVDEKFLRKAIEKLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIVAI 399
Query 303 IAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEELI 362
+ + +++G+QVA+M PTEILA QHY F + + V L+G + + +
Sbjct 400 LTSLAVVKSGYQVAVMVPTEILAHQHYKKFSEMLKDYGVNVALLTGSLTPSQKKSVYKHV 459
Query 363 RTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLVMTA 422
+ G + +++GTHAL QD VEF LG VIIDEQHRFGV QR L KG + PH LVM+A
Sbjct 460 KEGNIHVLVGTHALIQDKVEFKNLGYVIIDEQHRFGVMQRKLLLEKGKGLY-PHCLVMSA 518
Query 423 TPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAYWV 482
TPIPRTLA+S YGDLD S+IDELPPGR + T ++EEV ++ +G + Y +
Sbjct 519 TPIPRTLALSIYGDLDISIIDELPPGRKEVITKLYFESQKEEVYKKVEEELKKGNKVYVI 578
Query 483 CTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQLLIA 542
L+E+SE L+ +AA Y+ + FP+ KV L+HGKM +EK VM+ FK + +L++
Sbjct 579 YPLIEESEKLNLKAATEEYERWKKLFPDRKVLLLHGKMPDKEKLAVMEEFK-REGDILVS 637
Query 543 TTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNGQER 602
TTVIEVG+DVP A++MVIE+A R GLSQLHQLRGRVGR K ++C+L+ + E
Sbjct 638 TTVIEVGIDVPEATVMVIEDAHRFGLSQLHQLRGRVGRSDKEAYCLLVVPDEIKNEKNES 697
Query 603 LSILR---ESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLER--DDHLLVQAHYV 657
L LR ++ DGF IAE+DL+LRGPGE++G Q+G FRVA L R D LL A
Sbjct 698 LKRLRVFVKTTDGFKIAEEDLKLRGPGEIIGVSQSGYFGFRVANLARSQDRALLGVARKD 757
Query 658 AEQVLKDH 665
AE++LK++
Sbjct 758 AEELLKNN 765
>Q54900 ATP-dependent DNA helicase RecG [Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4)]
Length=671
Score = 422 bits (1086), Expect = 4e-142
Identities = 268/671 (40%), Positives = 393/671 (59%), Gaps = 32/671 (5%)
Query 9 VHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEI-- 66
+H L GVG +A KL I DLL + P YED T + +L G +L G++
Sbjct 7 LHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVL-ELEDGEKAVLSGQVVT 65
Query 67 -KSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGLE 125
S+ + KR + L+ + F++ L DK++ G L VFG+ L
Sbjct 66 PASVQYYGFKRNRLRFSLKQGEVVFAVNFFN-QPYLADKIELGATLAVFGKWDRAKASLT 124
Query 126 MYHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNL-PELLPKQFT 184
QV D P +Y +G++Q L + IK A Q D L E LP+
Sbjct 125 GMKVLAQVEDDLQP--------VYRLAQGISQASLVKVIKTAFDQGLDLLIEENLPQSLL 176
Query 185 NGYVLK---EALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIR-Q 240
+ Y L +A+ +H P A +Q A +R+ FEEL Q+ L ++ R Q
Sbjct 177 DKYKLMSRCQAVRAMHFPKYLAEYKQ-------ALRRIKFEELFYFQMQLQMLKSENRVQ 229
Query 241 IASPKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLV 300
+ SQ A+ LPF +T AQ++ +EI D+ M RL+QGDVG+GKT+V
Sbjct 230 GSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVV 289
Query 301 AAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEE 360
A +A A+ AG+Q ALM PTEILAEQH+ + + F L + + L+G K + + E
Sbjct 290 AGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPNLKLAL--LTGSLKAAEKREVLE 347
Query 361 LIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLVM 420
I G+ L++GTHAL QD VE+A+LGL+IIDEQHRFGV QR LR KG + P L+M
Sbjct 348 TIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDN---PDVLMM 404
Query 421 TATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAY 480
TATPIPRTLA++A+GD+D S+ID++P GR PI T I ++ +V+ + +G Q Y
Sbjct 405 TATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVY 464
Query 481 WVCTLVEQSETLDAQAAEATYQEIRSRFP-ELKVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
+ L+E+SE LD + A A +E+ + F + +V L+HG+MK++EK +MQ FK+ + +
Sbjct 465 VISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDI 524
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHPLSQNG 599
L++TTVIEVGV+VPNA++M+I +A+R GLSQLHQLRGRVGRG K S+ VL+ +P + +G
Sbjct 525 LVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYAVLV-ANPKTDSG 583
Query 600 QERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERDDHLLVQAHYVAE 659
++R+ I+ E+ +GFV+AE+DL++RG GE+ GT+Q+G F+VA + D +L +A VA
Sbjct 584 KDRMRIMTETTNGFVLAEEDLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVAS 643
Query 660 QVLKDHAQQAE 670
+ A Q +
Sbjct 644 YISSIEAWQED 654
>P96130 ATP-dependent DNA helicase RecG [Treponema pallidum (strain
Nichols)]
Length=686
Score = 403 bits (1035), Expect = 2e-134
Identities = 259/684 (38%), Positives = 379/684 (55%), Gaps = 35/684 (5%)
Query 12 LQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEIKS-LD 70
L+G G + LE+LNI T D+L + PR +EDR+ +Q + + + +
Sbjct 13 LKGTGKVVLAQLERLNISTIGDILSYWPRLWEDRTQEQMFSQWTLAHRLQVRVSVTAHCW 72
Query 71 FPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGLEMYHPE 130
F GK K++ ++QD G V L G V+G LE +
Sbjct 73 FGFGKSKTLKLVVQDGQGCVAELLCFRRNFLHFMFPVGSEAVVYGSFYEKDGLLESSSFD 132
Query 131 IQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLPELLPKQFTNGYVL- 189
I+ I + ++ +YP T+GL Q KLR I A+ Q+ + LPK Y L
Sbjct 133 IEKIDCI----EKKILPVYPLTKGLKQMKLRMLICAAMDQWIGTVDSELPKPILEKYHLL 188
Query 190 --KEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISL------------LTRR 235
++ L +H P + +A G H LIFEE + Q+++ LT+
Sbjct 189 TKRDVLLSMHTP---RTLDDVAKGKHS----LIFEEFFSLQMTIGMRSLQKRGRLPLTQG 241
Query 236 AYIRQIASPKFEPSQTLAKALLAQ-LPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVG 294
+Q A P +L + L + LPF++T QKRV EI DL + +PM RL+QGDVG
Sbjct 242 ESDQQSAIPSVVSELSLLQKKLHRCLPFELTVDQKRVITEITQDLEREEPMARLIQGDVG 301
Query 295 AGKTLVAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKA 354
+GKTLVA + +E G QVAL+APTE+LA QH R P+ I++ +L+G K +
Sbjct 302 SGKTLVAFFSCLKIIEQGGQVALLAPTELLARQHADTAARLLAPIGIRLAFLTGNVKSEG 361
Query 355 RTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHF- 413
R E + G++ LV+GTHALF +V + L LVIIDEQHRFGV QR AL KG +
Sbjct 362 RAYLLEALVAGEINLVVGTHALFSKSVRYHDLRLVIIDEQHRFGVLQRSALIQKGREGNP 421
Query 414 ---TPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIA 470
TPH ++M+ATPIPRTLA+S +GDLD S+I +P GR P+ T + E+V +
Sbjct 422 QGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKAEKVYEFVG 481
Query 471 SNCLEGKQAYWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQ 530
+ +G+QAY++ + D ++ + Y +++ F V ++H KM EE+Q +M+
Sbjct 482 NEIEKGRQAYFIYPRIHDIGLTDLKSVQCMYMYLKNYFARYAVAMIHSKMTEEEQQRIMK 541
Query 531 AFKDNQLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLL 590
F + + +L+AT+V+EVGVDVPNA+ +VIE+AER GLS LHQLRGRVGRG S+C L+
Sbjct 542 YFSEGTVHILVATSVVEVGVDVPNANCIVIEHAERFGLSALHQLRGRVGRGDVQSYCFLM 601
Query 591 YKHPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTK---QTGDMNFRVAKLERD 647
+ +++ + RL I+ + DGFVIAE+DL+LRGPG++ TK Q+G FRVA RD
Sbjct 602 HGDEMTECAKRRLKIMGSTADGFVIAEEDLKLRGPGDVGDTKNFEQSGYSGFRVADPVRD 661
Query 648 DHLLVQAHYVAEQVLKDHAQQAEA 671
+L A A ++L+ +EA
Sbjct 662 YPILQVAREAAFELLRKEKGSSEA 685
>O50581 ATP-dependent DNA helicase RecG [Staphylococcus aureus
(strain NCTC 8325 / PS 47)]
Length=686
Score = 396 bits (1018), Expect = 8e-132
Identities = 256/676 (38%), Positives = 387/676 (57%), Gaps = 47/676 (7%)
Query 8 SVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEIK 67
S+ L+G+G +L++LNI T +DL+ +LP YED +TVI +NQ + +EG++
Sbjct 12 SLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYED-NTVIDLNQAEDQSNVTIEGQVY 70
Query 68 SLD----FPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGE---VRVG 120
+ F K K L+ ++ + F Y L K++ Q + V G+ V+
Sbjct 71 TAPVVAFFGRNKSKLTVHLMVNNIAVKCIFFNQPY--LKKKIELNQTITVKGKWNRVKQE 128
Query 121 ARGLEMYH----PEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALKQYSDNLP 176
G ++ + Q D QL +Y EG+ Q ++R+ I+QAL + +
Sbjct 129 ITGNRVFFNSQGTQTQENAD------VQLEPVYRIKEGIKQKQIRDQIRQALNDVT--IH 180
Query 177 ELLPKQFTNGYVLKE---ALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLT 233
E L + Y L+ L+ +H P ++ + A++ F EL ++
Sbjct 181 EWLTDELREKYKLETLDFTLNTLHHPKSKEDLLR-------ARRTYAFTELFLFEL---- 229
Query 234 RRAYIRQIASPKFEPSQT-----LAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRL 288
R ++ ++ E + K+ + +LPF++T AQK EI DL M RL
Sbjct 230 RMQWLNRLEKSSDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRL 289
Query 289 VQGDVGAGKTLVAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSG 348
+QGDVG+GKT+VAAI AG+Q ALM PTEILAEQH + F S+ V L+G
Sbjct 290 LQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLMALFGD-SMNVALLTG 348
Query 349 KQKGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNK 408
KGK R E + G + ++GTHAL QD+V F +GLVI DEQHRFGV+QR LR K
Sbjct 349 SVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK 408
Query 409 GVDHFTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINR 468
G + L MTATPIPRTLA+S +G++D S I +LP GR PI T ++ ++V+ +
Sbjct 409 GA---MTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQ 465
Query 469 IASNCLEGKQAYWVCTLVEQSETL-DAQAAEATYQEIRSRFPELKVGLVHGKMKAEEKQN 527
+ S +G+QAY +C L+E SE L D Q A Y+ ++ + +VGL+HGK+ A+EK
Sbjct 466 MTSELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDE 525
Query 528 VMQAFKDNQLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFC 587
VMQ F ++++ +L++TTV+EVGV+VPNA+ M+I +A+R GLS LHQLRGRVGR + S+C
Sbjct 526 VMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYC 585
Query 588 VLLYKHPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMNFRVAKLERD 647
VL+ P ++ G ER++I+ ++ DGF ++E+DLE+RGPG+ G KQ+G +F VA L D
Sbjct 586 VLI-ASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANLVED 644
Query 648 DHLLVQAHYVAEQVLK 663
+L A A ++++
Sbjct 645 YRMLEVARDEAAELIQ 660
>O50224 ATP-dependent DNA helicase RecG [Acidithiobacillus ferrooxidans]
Length=652
Score = 312 bits (800), Expect = 5e-100
Identities = 185/422 (44%), Positives = 251/422 (59%), Gaps = 14/422 (3%)
Query 7 TSVHHLQGVGTAAASLLEKLNIFTTDDLLFHLPRDYEDRSTVIAMNQLMVGRSYLLEGEI 66
+SV L+GVG A L+ ++++ D+LFHLP Y+DR + +M L G+ + GEI
Sbjct 34 SSVSALRGVGPALVPRLQHMDLWRVQDVLFHLPSRYQDRRHIASMATLQAGQECAILGEI 93
Query 67 KSLDFPAGKRKSVAALLQDDCGKVTLRFYHIYKGLTDKLKSGQRLRVFGEVRVGARGLEM 126
+D G R+ + D G++ +R +H+ L + + G+RL FGE+R G GLEM
Sbjct 94 VRVDHQRGGREQWLVTVSDGSGRLQIRLFHMTVALRAQWQVGRRLWCFGELRGGFHGLEM 153
Query 127 YHPEIQVIHDYTPLPKTQLTAIYPSTEGLTQPKLREYIKQALK---QYSDNLPELLPKQF 183
HPE Q+ LT YPS+EG+TQ + R ++ QAL Q D L LP Q+
Sbjct 154 IHPEWQMADVPQFQAPRHLTPFYPSSEGITQAQWRRWMAQALTLLDQLPDYLENRLPPQW 213
Query 184 TNGYVLKEALHYIHEPPLNANMQQLALGSHPAQQRLIFEELVAHQISLLTRRAYIRQIAS 243
L+E L +HE + ++ HPA QRL EEL+A+ +++ R +
Sbjct 214 PG---LREGLRLLHE-----SADEIPSPQHPAWQRLALEELLANHLAVRRMRQSGMMQNA 265
Query 244 PKFEPSQTLAKALLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVAAI 303
P L LA LPF T AQ+RV EI DL + +PM RL+QGDVG+GKTLVAA
Sbjct 266 PCLRSKGQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGKTLVAAA 325
Query 304 AACHALEAGWQVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEELIR 363
A ALEAG+QVA+MAPTEILAEQ + F++W EPL ++VG+L G + +AR + E +
Sbjct 326 ATLTALEAGYQVAMMAPTEILAEQLHARFQQWLEPLGLEVGYLVGSRSPRARRETAETLA 385
Query 364 TGQVQLVMGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLALRNKGVDHFTPHQLVMTAT 423
G ++LV+GT +LFQ+ V FA LGLVIIDEQHRFGV+QR L KG PH LVMTAT
Sbjct 386 GGSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEKGA---MPHLLVMTAT 442
Query 424 PI 425
PI
Sbjct 443 PI 444
>P30958 Transcription-repair-coupling factor [Escherichia coli
(strain K12)]
Length=1148
Score = 245 bits (626), Expect = 3e-72
Identities = 149/387 (39%), Positives = 218/387 (56%), Gaps = 27/387 (7%)
Query 261 PFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVAAIAACHALEAGWQVALMAP 320
PF+ T Q + + D+ Q M RLV GDVG GKT VA AA A++ QVA++ P
Sbjct 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657
Query 321 TEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGTHALFQDN 380
T +LA+QHY NF+ F +++ +S + K +TQ + G++ +++GTH L Q +
Sbjct 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717
Query 381 VEFAKLGLVIIDEQHRFGV--DQRLALRNKGVDHFTPHQLVMTATPIPRTLAMSAYGDLD 438
V+F LGL+I+DE+HRFGV +R+ VD T +TATPIPRTL M+ G D
Sbjct 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT-----LTATPIPRTLNMAMSGMRD 772
Query 439 TSVIDELPPGRTPIQTVTIPLDR---REEVINRIASNCLEGKQAYWVCTLVEQSETLDAQ 495
S+I P R ++T D RE ++ I L G Q Y++ VE + +
Sbjct 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREI----LRGGQVYYLYNDVENIQKAAER 828
Query 496 AAEATYQEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGVDVPNA 555
AE PE ++ + HG+M+ E + VM F + +L+ TT+IE G+D+P A
Sbjct 829 LAELV--------PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880
Query 556 SIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYKHP--LSQNGQERLSILRESND-- 611
+ ++IE A+ GL+QLHQLRGRVGR ++ LL HP ++ + Q+RL + D
Sbjct 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940
Query 612 -GFVIAEKDLELRGPGELLGTKQTGDM 637
GF +A DLE+RG GELLG +Q+G M
Sbjct 941 AGFALATHDLEIRGAGELLGEEQSGSM 967
>P9WMQ5 Transcription-repair-coupling factor [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=1234
Score = 224 bits (570), Expect = 8e-65
Identities = 145/425 (34%), Positives = 224/425 (53%), Gaps = 24/425 (6%)
Query 218 RLIFEELVAHQISLLTRRAYIRQIASP--KFEPSQTLAKALLAQLPFQMTSAQKRVSKEI 275
R E+ +SL Y ++ ASP F P L F T Q +E+
Sbjct 606 RRAVREIAGELVSL-----YAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEV 660
Query 276 AHDLHQSQPMLRLVQGDVGAGKTLVAAIAACHALEAGWQVALMAPTEILAEQHYLNFKRW 335
D+ + PM R++ GDVG GKT +A AA A++ G QVA++ PT +LA+QH F
Sbjct 661 KADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGER 720
Query 336 FEPLSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGLVIIDEQH 395
+ + LS + + G V +V+GTH L Q V + LGLV++DE+
Sbjct 721 MSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQ 780
Query 396 RFGVDQRLALRNKGVDHFTPHQLVMTATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTV 455
RFGV+ + +++ L M+ATPIPRTL MS G + S I P R P+ T
Sbjct 781 RFGVEHKEHIKSLRTH---VDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTY 837
Query 456 TIPLDRREEVINRIASNCLEGKQAYWVCTLVEQSETLDAQAAEATYQEIRSRFPELKVGL 515
P D ++ + + L QA++V V ++DA AA +R PE +V +
Sbjct 838 VGPHDDKQ-IAAALRRELLRDGQAFYVHNRVS---SIDAAAAR-----VRELVPEARVVV 888
Query 516 VHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLR 575
HG+M + + +Q F + + +L+ TT++E G+D+ NA+ +++E A+ GLSQLHQLR
Sbjct 889 AHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLR 948
Query 576 GRVGRGAKASFCVLLY--KHPLSQNGQERLSILRESND---GFVIAEKDLELRGPGELLG 630
GRVGR + + LY + PL++ +RL+ + ++N+ G +A KDLE+RG G +LG
Sbjct 949 GRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLG 1008
Query 631 TKQTG 635
+Q+G
Sbjct 1009 IEQSG 1013
Score = 22.3 bits (46), Expect = 1.5
Identities = 9/14 (64%), Positives = 12/14 (86%), Gaps = 0/14 (0%)
Query 353 KARTQAEELIRTGQ 366
K RT+A +LIRTG+
Sbjct 321 KVRTRAADLIRTGR 334
>Q9DF35 Nucleolar RNA helicase 2-A [Xenopus laevis]
Length=759
Score = 55.5 bits (132), Expect = 9e-11
Identities = 72/331 (22%), Positives = 134/331 (40%), Gaps = 40/331 (12%)
Query 288 LVQGDVGAGKTLVAAIAACHALEAGWQ---------VALMAPTEILAEQHYLNFKRWFEP 338
+VQ G GKT AI L Q V ++ PT LA Q + +
Sbjct 220 VVQARTGTGKTFSFAIPLVEKLNEDQQPLARGRAPRVIILTPTRELAIQITNEIRSITKK 279
Query 339 LSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGL-----VIIDE 393
L + + G Q I+ G + ++GT +D V+ +L L V++DE
Sbjct 280 LKVSCFY-----GGTPYQQQVFAIKDG-IDFLVGTPGRVRDLVQNYRLDLTTLKHVVLDE 333
Query 394 QHRF-------GVDQRLALRNKGVDHFTPHQLVMTATPIPRTLAMSA-YGDLDTSVIDEL 445
V++ L++R K P L+ +AT M+ Y ID +
Sbjct 334 VDMMFDMGFSEQVEEILSVRYKADPEENPQTLLFSATCPDWMYNMAKKYMRKQFEKIDLI 393
Query 446 ----PPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAYWVCTLVEQSETLDAQAAEATY 501
T ++ + I R ++ + + ++ T++ L+A +
Sbjct 394 GHRSQKAATTVEHLAIECTRSQKAA--VLGDLVQVYSGSHGKTIIFCDSKLEAHTLATSC 451
Query 502 QEIRSRFPELKVGLVHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGVDVPNASIMVIE 561
++ L HG ++ +E++ V++ F+ ++LIAT V G+D+P ++V+
Sbjct 452 GSLKQSAKSL-----HGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIPEVDLVVLY 506
Query 562 NAERLGLSQLHQLRGRVGRGAKASFCVLLYK 592
+A + + +H+ GR GR + C+ LY+
Sbjct 507 SAPKEADAYVHR-SGRTGRAGRTGVCISLYE 536
>Q9DF36 Nucleolar RNA helicase 2-B [Xenopus laevis]
Length=800
Score = 55.1 bits (131), Expect = 1e-10
Identities = 73/339 (22%), Positives = 137/339 (40%), Gaps = 56/339 (17%)
Query 288 LVQGDVGAGKTLVAAIAACHALEAGWQ---------VALMAPTEILAEQHYLNFKRWFEP 338
+VQ G GKT I L Q V ++ PT LA Q + +
Sbjct 262 VVQARTGTGKTFSFGIPLVERLSEDQQPLARGRAPRVIILTPTRELAIQITNELRSMTKK 321
Query 339 LSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGTHALFQDNVEFAKLGL-----VIIDE 393
L + + G Q I+ G + ++GT +D V+ +L L V++DE
Sbjct 322 LKVACFY-----GGTPYQQQVFAIKDG-IDFLVGTPGRIRDLVQNYRLDLTALKHVVLDE 375
Query 394 QHRF-------GVDQRLALRNKGVDHFTPHQLVMTAT------PIPRTLAMSAYGDLDTS 440
V++ L++R K P L+ +AT + + Y +D
Sbjct 376 VDMMFDVGFSEQVEEILSVRYKPDPEENPQTLLFSATCPDWMYNVAKKYMRKQYEKVD-- 433
Query 441 VIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAYWVCTLVE-----QSETLDAQ 495
L R+ +T+ +A C ++A + +V+ +T+
Sbjct 434 ----LVGHRSQKAAITV---------EHLAIECNRSQKAAVLGDIVQVYSGSHGKTIIFC 480
Query 496 AAEATYQEIRSRFPELKVGL--VHGKMKAEEKQNVMQAFKDNQLQLLIATTVIEVGVDVP 553
++ E+ + LK +HG ++ +E++ V++ F+ ++LIAT V G+D+P
Sbjct 481 DSKLQAHELSTNCGSLKQSAKPLHGDLQQKEREVVLKGFRQGTFEVLIATNVAARGLDIP 540
Query 554 NASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLLYK 592
++V+ +A + + +H+ GR GR + C+ LY+
Sbjct 541 EVDLVVLYSAPKEADAYVHR-SGRTGRAGRTGVCISLYE 578
>Q55804 RNA helicase CrhR [Synechocystis sp. (strain PCC 6803
/ Kazusa)]
Length=492
Score = 54.7 bits (130), Expect = 1e-10
Identities = 81/351 (23%), Positives = 146/351 (42%), Gaps = 39/351 (11%)
Query 256 LLAQLPFQMTSAQKRVSKEIAHDLHQSQPMLRLVQGDVGAGKTLVAAIAACHAL--EAGW 313
LLA + F+ A ++ E L + ML Q G GKT A+ + E
Sbjct 21 LLADIGFE---APTQIQTEAIPLLLSGRDML--AQSQTGTGKTAAFALPLMDRIDPEGDL 75
Query 314 QVALMAPTEILAEQHYLNFKRWFEPLSIQVGWLSGKQKGKARTQAEELIRTGQVQLVMGT 373
Q ++ PT LA+Q K + + + + G Q + + ++ E VQ+V+GT
Sbjct 76 QALILTPTRELAQQVAEAMKDFSHERRLFILNVYGGQSIERQIRSLER----GVQIVVGT 131
Query 374 HALFQDNVEFAKLGL-----VIIDEQHR-----FGVDQRLALRNKGVDHFTP--HQLVMT 421
D ++ KL L V++DE F D + LR TP Q
Sbjct 132 PGRVIDLIDRKKLKLETIQWVVLDEADEMLSMGFIDDVKTILRK------TPPTRQTACF 185
Query 422 ATPIPRTLAMSAYGDLDTSVIDELPPGRTPIQTVTIPLDRREEVINRIASNCLEGKQAYW 481
+ +PR + +L +++ P T QT + P R E+ + + + K
Sbjct 186 SATMPREIK-----ELVNQFLND-PALVTVKQTQSTPT-RIEQQLYHVPRGWSKAKALQP 238
Query 482 VCTLVEQSETLDAQAAEATYQEIRSRFPEL--KVGLVHGKMKAEEKQNVMQAFKDNQLQL 539
+ + + + + T ++ SR E V HG + +++ ++ F+D +++L
Sbjct 239 ILEMEDPESAIIFVRTKQTAADLTSRLQEAGHSVDEYHGNLSQSQRERLVHRFRDGKIKL 298
Query 540 LIATTVIEVGVDVPNASIMVIENAERLGLSQLHQLRGRVGRGAKASFCVLL 590
++AT + G+DV N S +V + + +H++ GR GR K + L
Sbjct 299 VVATDIAARGLDVNNLSHVVNFDLPDNAETYIHRI-GRTGRAGKTGKAIAL 348
Lambda K H a alpha
0.320 0.136 0.393 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 7470060
Database: 3801f6e052c3927e909b2d941197c185.SwissProt.fasta
Posted date: May 9, 2024 2:51 PM
Number of letters in database: 12,898
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
