BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 576b7acfd593e2082da1dd3df2879b41.SwissProt.fasta
25 sequences; 5,035 total letters
Query= ACIAD3218
Length=206
Score E
Sequences producing significant alignments: (Bits) Value
Q6F7R3 Large ribosomal subunit protein uL4 [Acinetobacter baylyi ... 395 6e-146
A3M982 Large ribosomal subunit protein uL4 [Acinetobacter baumann... 381 2e-140
B0VQR9 Large ribosomal subunit protein uL4 [Acinetobacter baumann... 381 2e-140
B2HZM1 Large ribosomal subunit protein uL4 [Acinetobacter baumann... 381 2e-140
B7IA38 Large ribosomal subunit protein uL4 [Acinetobacter baumann... 381 2e-140
B7GW03 Large ribosomal subunit protein uL4 [Acinetobacter baumann... 381 2e-140
A5WCJ1 Large ribosomal subunit protein uL4 [Psychrobacter sp. (st... 322 5e-117
Q4FUF5 Large ribosomal subunit protein uL4 [Psychrobacter arcticu... 321 1e-116
Q1QDI5 Large ribosomal subunit protein uL4 [Psychrobacter cryohal... 320 2e-116
Q1R0H4 Large ribosomal subunit protein uL4 [Chromohalobacter sale... 280 1e-100
Q2S913 Large ribosomal subunit protein uL4 [Hahella chejuensis (s... 279 4e-100
Q0VSK2 Large ribosomal subunit protein uL4 [Alcanivorax borkumens... 276 4e-99
A1T0E1 Large ribosomal subunit protein uL4 [Psychromonas ingraham... 275 1e-98
C4L7T1 Large ribosomal subunit protein uL4 [Tolumonas auensis (st... 274 5e-98
Q9KNY5 Large ribosomal subunit protein uL4 [Vibrio cholerae serot... 266 4e-95
P44345 Large ribosomal subunit protein uL4 [Haemophilus influenza... 265 2e-94
P60723 Large ribosomal subunit protein uL4 [Escherichia coli (str... 263 7e-94
P60726 Large ribosomal subunit protein uL4 [Salmonella typhimuriu... 263 7e-94
Q9HWD6 Large ribosomal subunit protein uL4 [Pseudomonas aeruginos... 262 3e-93
P55836 Large ribosomal subunit protein uL4 [Aggregatibacter actin... 261 7e-93
P49226 Large ribosomal subunit protein uL4 [Morganella morganii] 259 2e-92
P60731 Large ribosomal subunit protein uL4 [Yersinia pseudotuberc... 258 6e-92
P28601 Large ribosomal subunit protein uL4 [Geobacillus stearothe... 168 3e-56
P42921 Large ribosomal subunit protein uL4 [Bacillus subtilis (st... 148 2e-48
P0C0D5 Large ribosomal subunit protein uL4 [Streptococcus pyogenes] 145 2e-47
>Q6F7R3 Large ribosomal subunit protein uL4 [Acinetobacter baylyi
(strain ATCC 33305 / BD413 / ADP1)]
Length=205
Score = 395 bits (1015), Expect = 6e-146
Identities = 204/205 (99%), Positives = 205/205 (100%), Gaps = 0/205 (0%)
Query 1 LRGNNVNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGG 60
+RGNNVNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGG
Sbjct 1 MRGNNVNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGG 60
Query 61 KKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQD 120
KKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQD
Sbjct 61 KKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQD 120
Query 121 RLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAID 180
RLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAID
Sbjct 121 RLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAID 180
Query 181 PVSLIAFDKVVMSVAAAKKIEVELG 205
PVSLIAFDKVVMSVAAAKKIEVELG
Sbjct 181 PVSLIAFDKVVMSVAAAKKIEVELG 205
>A3M982 Large ribosomal subunit protein uL4 [Acinetobacter baumannii
(strain ATCC 17978 / CIP 53.77 / LMG 1025 / NCDC KC755
/ 5377)]
Length=200
Score = 381 bits (979), Expect = 2e-140
Identities = 197/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRA KSRA+VSGGGKKPFR
Sbjct 1 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV
Sbjct 61 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI
Sbjct 121 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
AFDKVVMSVAAAKKIEVELG
Sbjct 181 AFDKVVMSVAAAKKIEVELG 200
>B0VQR9 Large ribosomal subunit protein uL4 [Acinetobacter baumannii
(strain SDF)]
Length=200
Score = 381 bits (979), Expect = 2e-140
Identities = 197/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRA KSRA+VSGGGKKPFR
Sbjct 1 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV
Sbjct 61 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI
Sbjct 121 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
AFDKVVMSVAAAKKIEVELG
Sbjct 181 AFDKVVMSVAAAKKIEVELG 200
>B2HZM1 Large ribosomal subunit protein uL4 [Acinetobacter baumannii
(strain ACICU)]
Length=200
Score = 381 bits (979), Expect = 2e-140
Identities = 197/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRA KSRA+VSGGGKKPFR
Sbjct 1 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV
Sbjct 61 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI
Sbjct 121 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
AFDKVVMSVAAAKKIEVELG
Sbjct 181 AFDKVVMSVAAAKKIEVELG 200
>B7IA38 Large ribosomal subunit protein uL4 [Acinetobacter baumannii
(strain AB0057)]
Length=200
Score = 381 bits (979), Expect = 2e-140
Identities = 197/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRA KSRA+VSGGGKKPFR
Sbjct 1 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV
Sbjct 61 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI
Sbjct 121 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
AFDKVVMSVAAAKKIEVELG
Sbjct 181 AFDKVVMSVAAAKKIEVELG 200
>B7GW03 Large ribosomal subunit protein uL4 [Acinetobacter baumannii
(strain AB307-0294)]
Length=200
Score = 381 bits (979), Expect = 2e-140
Identities = 197/200 (99%), Positives = 199/200 (99%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRA KSRA+VSGGGKKPFR
Sbjct 1 MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV
Sbjct 61 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI
Sbjct 121 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
AFDKVVMSVAAAKKIEVELG
Sbjct 181 AFDKVVMSVAAAKKIEVELG 200
>A5WCJ1 Large ribosomal subunit protein uL4 [Psychrobacter sp.
(strain PRwf-1)]
Length=200
Score = 322 bits (825), Expect = 5e-117
Identities = 160/199 (80%), Positives = 181/199 (91%), Gaps = 0/199 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NLKTV+G+AVELS+ AFGREFNEALVHQVVTAYLAG RQGTRAQK+RAEVSGGGKKP+R
Sbjct 1 MNLKTVTGAAVELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGKKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGS RSPIWVGGG+ FAA+PQDWSQKVNRKMYRGAMQCILAELVRQDRL+LV
Sbjct 61 QKGTGRARAGSTRSPIWVGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELVRQDRLILV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
+ V+APKTKEL++KL +LNA RALIVT+ VDENLYLAARN+PHV+V+ +DPVSLI
Sbjct 121 DSITVSAPKTKELISKLAELNAPRALIVTNEVDENLYLAARNIPHVNVLGTNEVDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVEL 204
AFDKV+MSV AAK+ E L
Sbjct 181 AFDKVIMSVDAAKQFEEAL 199
>Q4FUF5 Large ribosomal subunit protein uL4 [Psychrobacter arcticus
(strain DSM 17307 / VKM B-2377 / 273-4)]
Length=200
Score = 321 bits (822), Expect = 1e-116
Identities = 159/199 (80%), Positives = 182/199 (91%), Gaps = 0/199 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
++LKTV+G+AVELS+ AFGREFNEALVHQVVTAYLAG RQGTRAQK+RAEVSGGG KP+R
Sbjct 1 MDLKTVTGAAVELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIW GGG+ FAA+PQDWSQKVNRKMYRGAMQCILAEL+RQ+RL+LV
Sbjct 61 QKGTGRARAGSIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EE +V+ PKTKEL+AKLN+L A RALIVT VDENLYLAARN+PHV+V+D + +DPVSLI
Sbjct 121 EEISVSGPKTKELIAKLNELGAPRALIVTKEVDENLYLAARNIPHVNVLDTSEVDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVEL 204
AFDKV+MSV AAK+ E L
Sbjct 181 AFDKVIMSVEAAKQFEEAL 199
>Q1QDI5 Large ribosomal subunit protein uL4 [Psychrobacter cryohalolentis
(strain ATCC BAA-1226 / DSM 17306 / VKM B-2378 /
K5)]
Length=200
Score = 320 bits (821), Expect = 2e-116
Identities = 158/199 (79%), Positives = 183/199 (92%), Gaps = 0/199 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
++LKTV+G+AVELS+ AFGREFNEALVHQVVTAYLAG RQGTRAQK+RAEVSGGG KP+R
Sbjct 1 MDLKTVTGAAVELSDTAFGREFNEALVHQVVTAYLAGARQGTRAQKTRAEVSGGGIKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAGSIRSPIW GGG+ FAA+PQDWSQKVNRKMYRGAMQCILAEL+RQ+RL+LV
Sbjct 61 QKGTGRARAGSIRSPIWRGGGRAFAAKPQDWSQKVNRKMYRGAMQCILAELIRQERLILV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
EE +V+ PKTKEL+AKL +LNA+RALIVT VDENLYLAARN+PHV+V+D + +DPVSLI
Sbjct 121 EEISVSGPKTKELIAKLGELNASRALIVTKEVDENLYLAARNIPHVNVLDTSEVDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVEL 204
AFDKV+M+V AAK+ E L
Sbjct 181 AFDKVIMTVEAAKQFEEAL 199
>Q1R0H4 Large ribosomal subunit protein uL4 [Chromohalobacter
salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB
13768 / 1H11)]
Length=202
Score = 280 bits (717), Expect = 1e-100
Identities = 137/201 (68%), Positives = 170/201 (85%), Gaps = 0/201 (0%)
Query 5 NVNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPF 64
N+NL VE+S+ FG+EFNE+LVHQVVTAY A GRQGTRAQK+R+EV GGGKKP+
Sbjct 2 NLNLAGADAGTVEVSDATFGKEFNESLVHQVVTAYFAAGRQGTRAQKTRSEVRGGGKKPW 61
Query 65 RQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVL 124
RQKGTGRARAG+IRSP+W GG TFAARPQD++QKVNRKMYR AM+ IL+ELVRQ+RLV+
Sbjct 62 RQKGTGRARAGTIRSPLWRSGGVTFAARPQDYTQKVNRKMYRAAMRSILSELVRQERLVV 121
Query 125 VEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSL 184
V+ F V APKTK+L+AKL DL+ +ALIVT+ +DE L+LAARN+P+VDVVD A DPVSL
Sbjct 122 VDSFEVDAPKTKQLVAKLKDLDLEKALIVTEDIDEKLFLAARNIPYVDVVDVAAADPVSL 181
Query 185 IAFDKVVMSVAAAKKIEVELG 205
+AFDKV+++V+A +K E +LG
Sbjct 182 VAFDKVLVTVSALRKFEEKLG 202
>Q2S913 Large ribosomal subunit protein uL4 [Hahella chejuensis
(strain KCTC 2396)]
Length=202
Score = 279 bits (714), Expect = 4e-100
Identities = 143/199 (72%), Positives = 170/199 (85%), Gaps = 3/199 (2%)
Query 10 TVSGSA---VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQ 66
T++G+ V +S+VAF R+FNEALVHQVVTAYLAGGRQG++AQK+R++VSGGGKKP+RQ
Sbjct 4 TINGAGKGTVSVSDVAFARDFNEALVHQVVTAYLAGGRQGSKAQKTRSQVSGGGKKPWRQ 63
Query 67 KGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVE 126
KG+GRARAG+IRSPIW GGGKTFAA P D SQKVN+KMYR AMQ IL+ELVRQ+RLV+VE
Sbjct 64 KGSGRARAGTIRSPIWRGGGKTFAATPLDHSQKVNKKMYRAAMQSILSELVRQERLVVVE 123
Query 127 EFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIA 186
E AV APKTK+ AKL DL LIV DAVD+NLYLA+RN+PHVDV DA AI+PVSLIA
Sbjct 124 EMAVEAPKTKQFNAKLKDLGLENVLIVADAVDQNLYLASRNIPHVDVCDAVAINPVSLIA 183
Query 187 FDKVVMSVAAAKKIEVELG 205
DKV+++V+A KKIE LG
Sbjct 184 HDKVLVTVSALKKIEEMLG 202
>Q0VSK2 Large ribosomal subunit protein uL4 [Alcanivorax borkumensis
(strain ATCC 700651 / DSM 11573 / NCIMB 13689 / SK2)]
Length=200
Score = 276 bits (707), Expect = 4e-99
Identities = 136/199 (68%), Positives = 169/199 (85%), Gaps = 0/199 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+NL T SG V +SEVAFG++FNE LVHQVVTA+LAG RQG++AQK+R++VSGGG+KP+R
Sbjct 1 MNLNTASGGTVTVSEVAFGKDFNEPLVHQVVTAFLAGARQGSKAQKNRSDVSGGGRKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAG+IRSPIW GGGKTFAA P+D SQKVNRKMYRGA+QCI++ELVRQ+RLV+V
Sbjct 61 QKGTGRARAGTIRSPIWRGGGKTFAAVPRDHSQKVNRKMYRGALQCIMSELVRQERLVVV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
+EF V +PKTK + AKL + LIVTD VDENL++A+RNLP VDV D+ +DPVSLI
Sbjct 121 DEFTVDSPKTKAVAAKLKGMELTSVLIVTDNVDENLFMASRNLPKVDVRDSQGVDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVEL 204
AF+KV+++V A KK+E L
Sbjct 181 AFEKVLITVPALKKLEEAL 199
>A1T0E1 Large ribosomal subunit protein uL4 [Psychromonas ingrahamii
(strain DSM 17664 / CCUG 51855 / 37)]
Length=201
Score = 275 bits (704), Expect = 1e-98
Identities = 139/191 (73%), Positives = 165/191 (86%), Gaps = 0/191 (0%)
Query 14 SAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRAR 73
SA+E+SE FGREFNEALVHQVV AY AG RQGTRAQK+R++VSGGGKKP+RQKGTGRAR
Sbjct 10 SALEVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSDVSGGGKKPWRQKGTGRAR 69
Query 74 AGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAP 133
+G+IRSPIWVGGG TFAARPQD SQKVN+KMYRGA++ IL+ELVRQDRL++VE+F+V AP
Sbjct 70 SGTIRSPIWVGGGVTFAARPQDHSQKVNKKMYRGAVKSILSELVRQDRLIVVEKFSVEAP 129
Query 134 KTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMS 193
KT+EL AKL +L+ LI+T+ +DENL+LAARNL VDV D IDPVSLIAFDKV+++
Sbjct 130 KTQELKAKLKELDLKDVLIITEELDENLFLAARNLYKVDVRDVQGIDPVSLIAFDKVLVT 189
Query 194 VAAAKKIEVEL 204
AA KKIE L
Sbjct 190 AAAVKKIEESL 200
>C4L7T1 Large ribosomal subunit protein uL4 [Tolumonas auensis
(strain DSM 9187 / TA4)]
Length=201
Score = 274 bits (700), Expect = 5e-98
Identities = 142/188 (76%), Positives = 160/188 (85%), Gaps = 0/188 (0%)
Query 14 SAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRAR 73
SA+++SE FGREFNEALVHQVV AY AG RQGTRAQK+R+EVSGGGKKP+RQKGTGRAR
Sbjct 10 SALQVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGKKPWRQKGTGRAR 69
Query 74 AGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAP 133
AG+IRSPIW GGG TFAA+PQD SQKVNRKMYRGA+Q IL+ELVRQDRLV+VE+F V AP
Sbjct 70 AGTIRSPIWRGGGVTFAAKPQDHSQKVNRKMYRGAIQSILSELVRQDRLVVVEKFGVDAP 129
Query 134 KTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMS 193
KTKELL KL L+ LIVT V+ENL+LAARNL VDV D T IDPVSLIAFDKV+M+
Sbjct 130 KTKELLTKLQALDLKDVLIVTPEVEENLFLAARNLYKVDVRDVTGIDPVSLIAFDKVLMT 189
Query 194 VAAAKKIE 201
A K+IE
Sbjct 190 ADAVKQIE 197
>Q9KNY5 Large ribosomal subunit protein uL4 [Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961)]
Length=200
Score = 266 bits (681), Expect = 4e-95
Identities = 137/196 (70%), Positives = 160/196 (82%), Gaps = 0/196 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+ L +A+ +SE FGREFNEALVHQVV AY AG RQGTRAQK+R+EVSGGG KP+R
Sbjct 1 MELMVKGANALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAG+IRSPIW GG TFAA+PQD SQKVN+KMYRGAM+ IL+ELVRQ+RL++V
Sbjct 61 QKGTGRARAGTIRSPIWRTGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
E F+V APKTK L+AKL +L LIVT VDENL+LAARNL VDV D T IDPVSLI
Sbjct 121 ENFSVEAPKTKALVAKLKELELNDVLIVTGEVDENLFLAARNLYKVDVRDVTGIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIE 201
AFDKV+M+ AA K++E
Sbjct 181 AFDKVLMTAAAVKQVE 196
>P44345 Large ribosomal subunit protein uL4 [Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd)]
Length=200
Score = 265 bits (676), Expect = 2e-94
Identities = 135/196 (69%), Positives = 161/196 (82%), Gaps = 0/196 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+ L+ V +A+ +SE FGREFNEAL+HQVV AY AG RQGTRAQK+RAEVSG GKKP+R
Sbjct 1 MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGTRAQKTRAEVSGSGKKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAG I+SPIW GG TFAA+PQD SQKVN+KMYRGA++ IL+ELVRQDRLV+V
Sbjct 61 QKGTGRARAGDIKSPIWRSGGTTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
E+F + APKTK L+ KL DL ALI+T ++DENL+LAARNL VDV D IDPVSLI
Sbjct 121 EKFELDAPKTKVLVQKLKDLAVEDALIITASLDENLFLAARNLYKVDVRDVQGIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIE 201
AFDKV+++V A K+IE
Sbjct 181 AFDKVIVTVDAVKQIE 196
>P60723 Large ribosomal subunit protein uL4 [Escherichia coli
(strain K12)]
Length=201
Score = 263 bits (673), Expect = 7e-94
Identities = 134/188 (71%), Positives = 157/188 (84%), Gaps = 0/188 (0%)
Query 14 SAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRAR 73
SA+ +SE FGR+FNEALVHQVV AY AG RQGTRAQK+RAEV+G GKKP+RQKGTGRAR
Sbjct 10 SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 69
Query 74 AGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAP 133
+GSI+SPIW GG TFAARPQD SQKVN+KMYRGA++ IL+ELVRQDRL++VE+F+V AP
Sbjct 70 SGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAP 129
Query 134 KTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMS 193
KTK L KL D+ LI+T +DENL+LAARNL VDV DAT IDPVSLIAFDKVVM+
Sbjct 130 KTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMT 189
Query 194 VAAAKKIE 201
A K++E
Sbjct 190 ADAVKQVE 197
>P60726 Large ribosomal subunit protein uL4 [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=201
Score = 263 bits (673), Expect = 7e-94
Identities = 134/188 (71%), Positives = 157/188 (84%), Gaps = 0/188 (0%)
Query 14 SAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRAR 73
SA+ +SE FGR+FNEALVHQVV AY AG RQGTRAQK+RAEV+G GKKP+RQKGTGRAR
Sbjct 10 SALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRAR 69
Query 74 AGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAP 133
+GSI+SPIW GG TFAARPQD SQKVN+KMYRGA++ IL+ELVRQDRL++VE+F+V AP
Sbjct 70 SGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYRGALKSILSELVRQDRLIVVEKFSVEAP 129
Query 134 KTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMS 193
KTK L KL D+ LI+T +DENL+LAARNL VDV DAT IDPVSLIAFDKVVM+
Sbjct 130 KTKLLAQKLKDMALEDVLIITGELDENLFLAARNLHKVDVRDATGIDPVSLIAFDKVVMT 189
Query 194 VAAAKKIE 201
A K++E
Sbjct 190 ADAVKQVE 197
>Q9HWD6 Large ribosomal subunit protein uL4 [Pseudomonas aeruginosa
(strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847
/ LMG 12228 / 1C / PRS 101 / PAO1)]
Length=200
Score = 262 bits (669), Expect = 3e-93
Identities = 134/200 (67%), Positives = 159/200 (80%), Gaps = 0/200 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+ L A+E+SE FG EFNE LVHQ V AY+AGGRQG++AQK+R+EVSGGGKKP+R
Sbjct 1 MQLNVNGAQAIEVSERTFGGEFNETLVHQAVVAYMAGGRQGSKAQKTRSEVSGGGKKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRARAG+IRSPIW GGG TFAA+P+ QK+N+KMYR A++ ILAELVR DRLV+V
Sbjct 61 QKGTGRARAGTIRSPIWRGGGTTFAAKPRSHEQKLNKKMYRAALRSILAELVRLDRLVVV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
+FAV APKTK L+AKL+ L LIVTD VDENLYLAARNL HVDV D DPVSLI
Sbjct 121 ADFAVDAPKTKGLVAKLDTLGLKDVLIVTDGVDENLYLAARNLAHVDVRDVQGSDPVSLI 180
Query 186 AFDKVVMSVAAAKKIEVELG 205
A+DKV+++V+A KK E LG
Sbjct 181 AYDKVLVTVSAVKKFEELLG 200
>P55836 Large ribosomal subunit protein uL4 [Aggregatibacter actinomycetemcomitans]
Length=200
Score = 261 bits (666), Expect = 7e-93
Identities = 133/196 (68%), Positives = 161/196 (82%), Gaps = 0/196 (0%)
Query 6 VNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFR 65
+ L+ V +A+ +SE FGREFNEAL+HQVV AY AG RQG+RAQK+RAEVSG GKKP+R
Sbjct 1 MELQVVGANALTVSETTFGREFNEALIHQVVVAYAAGARQGSRAQKTRAEVSGSGKKPWR 60
Query 66 QKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLV 125
QKGTGRAR+G IRSPIW GG TFAA+PQD SQKVN+KMYRGA++ IL+ELVRQDRLV+V
Sbjct 61 QKGTGRARSGDIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAIKSILSELVRQDRLVVV 120
Query 126 EEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLI 185
++F + APKTK L+ KL +L LI+T ++DENL+LAARNL VDV DA IDPVSLI
Sbjct 121 DKFEIDAPKTKVLVQKLKELALEDVLIITASLDENLFLAARNLYKVDVRDAQGIDPVSLI 180
Query 186 AFDKVVMSVAAAKKIE 201
AFDKVV++V A K+IE
Sbjct 181 AFDKVVVTVDAVKQIE 196
>P49226 Large ribosomal subunit protein uL4 [Morganella morganii]
Length=200
Score = 259 bits (663), Expect = 2e-92
Identities = 132/187 (71%), Positives = 156/187 (83%), Gaps = 0/187 (0%)
Query 15 AVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRARA 74
++ +SE FGR+FNEALVHQVV AY AG RQGTRAQK+RAEV+G GKKP+RQKGTGRAR+
Sbjct 10 SLTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARS 69
Query 75 GSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPK 134
GSI+SPIW GG TFAA+PQD SQKVN+KMYRGA++ IL+ELVRQDRL++VE+FAV APK
Sbjct 70 GSIKSPIWRSGGITFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFAVEAPK 129
Query 135 TKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSV 194
TK L+ KL D+ +IVT VDENL+LAARNL VDV D TAIDPVSLIAF KVVM+
Sbjct 130 TKLLVQKLKDMALEDVMIVTHEVDENLFLAARNLYKVDVRDVTAIDPVSLIAFGKVVMTA 189
Query 195 AAAKKIE 201
A K++E
Sbjct 190 EAVKQVE 196
>P60731 Large ribosomal subunit protein uL4 [Yersinia pseudotuberculosis
serotype I (strain IP32953)]
Length=201
Score = 258 bits (660), Expect = 6e-92
Identities = 131/187 (70%), Positives = 154/187 (82%), Gaps = 0/187 (0%)
Query 15 AVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRARA 74
A+ +SE FGR+FNEALVHQVV AY AG RQGTRAQK+RAEV+G GKKP+RQKGTGRARA
Sbjct 11 ALTVSETTFGRDFNEALVHQVVVAYAAGARQGTRAQKTRAEVTGSGKKPWRQKGTGRARA 70
Query 75 GSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPK 134
GS++SPIW GG TFAA+PQD SQKVN+KMYRGA++ IL+ELVRQDRL++VE+F+V APK
Sbjct 71 GSVKSPIWRSGGVTFAAKPQDHSQKVNKKMYRGALKSILSELVRQDRLIIVEKFSVEAPK 130
Query 135 TKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSV 194
TK L KL D+ LIVT +DENL+LAARNL VDV D IDPVSLIAFDKVVM+
Sbjct 131 TKLLAQKLKDMALEDVLIVTGELDENLFLAARNLYKVDVRDVAGIDPVSLIAFDKVVMTA 190
Query 195 AAAKKIE 201
A K++E
Sbjct 191 DAVKQVE 197
>P28601 Large ribosomal subunit protein uL4 [Geobacillus stearothermophilus]
Length=207
Score = 168 bits (425), Expect = 3e-56
Identities = 91/198 (46%), Positives = 138/198 (70%), Gaps = 3/198 (2%)
Query 5 NVNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPF 64
N N +TV +EL++ FG E N+ ++ + V A RQGT K+RAEVSGGG+KP+
Sbjct 8 NQNGQTVG--EIELNDAVFGIEPNKHVLFEAVIMQRASMRQGTHKTKNRAEVSGGGRKPW 65
Query 65 RQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVL 124
RQKGTGRAR GSIR+P W GGG F P+ +S K+ +K+ R A++ L+ V ++ +V+
Sbjct 66 RQKGTGRARQGSIRAPQWRGGGTVFGPVPRSYSYKLPKKVRRLAIKSALSSKVLENDIVV 125
Query 125 VEEFAVAAPKTKELLAKLNDLNAAR-ALIVTDAVDENLYLAARNLPHVDVVDATAIDPVS 183
+++ ++ APKTKE++ LN+L+ R ALIVTD ++EN+YL+ARN+P V VV A I+ +
Sbjct 126 LDQLSLEAPKTKEMVKILNNLSVDRKALIVTDELNENVYLSARNIPGVKVVPANGINVLD 185
Query 184 LIAFDKVVMSVAAAKKIE 201
++ DK+V++ AA +K+E
Sbjct 186 VLNHDKLVITKAAVEKVE 203
>P42921 Large ribosomal subunit protein uL4 [Bacillus subtilis
(strain 168)]
Length=207
Score = 148 bits (373), Expect = 2e-48
Identities = 79/187 (42%), Positives = 123/187 (66%), Gaps = 1/187 (1%)
Query 16 VELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGKKPFRQKGTGRARAG 75
+EL+ FG E NE++V + A RQGT K+R+EV GGG+KP+RQKGTGRAR G
Sbjct 17 IELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQG 76
Query 76 SIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKT 135
SIRSP W GGG F P+ +S K+ +K+ R A++ +L+ V + ++++E+ + KT
Sbjct 77 SIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKT 136
Query 136 KELLAKLNDLNA-ARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSV 194
KE+ A L L+ +ALIVT +E + L+ARN+P V VV+A I+ + ++ +K++++
Sbjct 137 KEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITK 196
Query 195 AAAKKIE 201
AA +K+E
Sbjct 197 AAVEKVE 203
>P0C0D5 Large ribosomal subunit protein uL4 [Streptococcus pyogenes]
Length=207
Score = 145 bits (367), Expect = 2e-47
Identities = 85/201 (42%), Positives = 124/201 (62%), Gaps = 4/201 (2%)
Query 5 NVNLKTVSG---SAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAQKSRAEVSGGGK 61
NV L +G S+VEL++ FG E NE++V VV + A RQGT A K+R+ VSGGG+
Sbjct 3 NVKLFDQTGKEVSSVELNDAIFGIEPNESVVFDVVISQRASLRQGTHAVKNRSAVSGGGR 62
Query 62 KPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDR 121
KP+RQKGTGRAR GSIRSP W GGG F P+ + K+ +K+ R A++ + + V +D+
Sbjct 63 KPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYGYKLPQKVRRLALKSVYSAKVAEDK 122
Query 122 LVLVEEFAVAAPKTKELLAKLNDLNA-ARALIVTDAVDENLYLAARNLPHVDVVDATAID 180
V VE + AAPKT E L+ L+ + L++ + +E L+ARNLP+V V A
Sbjct 123 FVAVEGLSFAAPKTAEFAKVLSALSIDTKVLVLVEEGNEFAALSARNLPNVTVATAATAS 182
Query 181 PVSLIAFDKVVMSVAAAKKIE 201
+ ++ DK++++ A IE
Sbjct 183 VLDIVNADKLLVTKEAISTIE 203
Lambda K H a alpha
0.320 0.134 0.378 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 653540
Database: 576b7acfd593e2082da1dd3df2879b41.SwissProt.fasta
Posted date: May 9, 2024 7:39 PM
Number of letters in database: 5,035
Number of sequences in database: 25
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
