Comparative Genomics

ACIAD3201 / TrEMBL Alignments

BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 11d090908da7ac07572c0f04c32a1163.TrEMBL.fasta
           21 sequences; 1,222 total letters



Query= ACIAD3201

Length=59
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A0A1P8EJZ0 Large ribosomal subunit protein uL30 [Acinetobacter soli]  119     1e-41
A0A1E7R2V9 Large ribosomal subunit protein uL30 [Acinetobacter qi...  119     1e-41
A0A0M1I864 Large ribosomal subunit protein uL30 [Acinetobacter sp...  119     1e-41
N9BXU6 Large ribosomal subunit protein uL30 [Acinetobacter soli N...  119     1e-41
A0A7G2SIA6 Large ribosomal subunit protein uL30 [Acinetobacter sp]    119     1e-41
A0A4R1YA52 Large ribosomal subunit protein uL30 [Acinetobacter ca...  118     2e-41
S3NQP7 Large ribosomal subunit protein uL30 [Acinetobacter rudis ...  117     3e-41
A0A7H2X1T0 Large ribosomal subunit protein uL30 [Acinetobacter se...  117     3e-41
A0A3A8EE82 Large ribosomal subunit protein uL30 [Acinetobacter gu...  117     6e-41
A0A009ZUL3 Large ribosomal subunit protein uL30 [Acinetobacter sp...  117     6e-41
N9DIN2 Large ribosomal subunit protein uL30 [Acinetobacter ursing...  117     6e-41
A0A2N6VEE0 Large ribosomal subunit protein uL30 [Acinetobacter ur...  117     6e-41
A0A4Q6XMH7 Large ribosomal subunit protein uL30 [Acinetobacter ha...  116     8e-41
V2US90 Large ribosomal subunit protein uL30 [Acinetobacter nectar...  116     1e-40
A0A062GVY5 Large ribosomal subunit protein uL30 [Acinetobacter sp...  115     2e-40
A0A1V2V5Z3 Large ribosomal subunit protein uL30 [Acinetobacter ge...  115     2e-40
N9RD14 Large ribosomal subunit protein uL30 [Acinetobacter courva...  115     2e-40
N8V730 Large ribosomal subunit protein uL30 [Acinetobacter sp. CI...  115     2e-40
A0A0E0XV41 Large ribosomal subunit protein uL30 [Escherichia coli...  77.0    4e-25
A0A8B6X0Y9 Large ribosomal subunit protein uL30 [Derxia gummosa D...  55.1    2e-16
F5HRU6 Large ribosomal subunit protein uL30 [Bacillus subtilis]       42.4    2e-11


>A0A1P8EJZ0 Large ribosomal subunit protein uL30 [Acinetobacter 
soli]
Length=58

 Score = 119 bits (297),  Expect = 1e-41
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A1E7R2V9 Large ribosomal subunit protein uL30 [Acinetobacter 
qingfengensis]
Length=58

 Score = 119 bits (297),  Expect = 1e-41
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A0M1I864 Large ribosomal subunit protein uL30 [Acinetobacter 
sp. C15]
Length=58

 Score = 119 bits (297),  Expect = 1e-41
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>N9BXU6 Large ribosomal subunit protein uL30 [Acinetobacter soli 
NIPH 2899]
Length=58

 Score = 119 bits (297),  Expect = 1e-41
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A7G2SIA6 Large ribosomal subunit protein uL30 [Acinetobacter 
sp]
Length=58

 Score = 119 bits (297),  Expect = 1e-41
 Identities = 58/58 (100%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A4R1YA52 Large ribosomal subunit protein uL30 [Acinetobacter 
calcoaceticus]
Length=58

 Score = 118 bits (295),  Expect = 2e-41
 Identities = 57/58 (98%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKSASHRLKNHKLC+QGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSASHRLKNHKLCMQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>S3NQP7 Large ribosomal subunit protein uL30 [Acinetobacter rudis 
CIP 110305]
Length=58

 Score = 117 bits (294),  Expect = 3e-41
 Identities = 57/58 (98%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A7H2X1T0 Large ribosomal subunit protein uL30 [Acinetobacter 
seifertii]
Length=58

 Score = 117 bits (294),  Expect = 3e-41
 Identities = 57/58 (98%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQIKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A3A8EE82 Large ribosomal subunit protein uL30 [Acinetobacter 
guerrae]
Length=58

 Score = 117 bits (292),  Expect = 6e-41
 Identities = 57/58 (98%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A009ZUL3 Large ribosomal subunit protein uL30 [Acinetobacter 
sp. 479375]
Length=58

 Score = 117 bits (292),  Expect = 6e-41
 Identities = 57/58 (98%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>N9DIN2 Large ribosomal subunit protein uL30 [Acinetobacter ursingii 
ANC 3649]
Length=58

 Score = 117 bits (292),  Expect = 6e-41
 Identities = 57/58 (98%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A2N6VEE0 Large ribosomal subunit protein uL30 [Acinetobacter 
ursingii]
Length=58

 Score = 117 bits (292),  Expect = 6e-41
 Identities = 57/58 (98%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A4Q6XMH7 Large ribosomal subunit protein uL30 [Acinetobacter 
halotolerans]
Length=58

 Score = 116 bits (291),  Expect = 8e-41
 Identities = 56/58 (97%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGM+NKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMVNKVYYMVSVEE  58


>V2US90 Large ribosomal subunit protein uL30 [Acinetobacter nectaris 
CIP 110549]
Length=58

 Score = 116 bits (290),  Expect = 1e-40
 Identities = 56/58 (97%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQIKS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMIN+VYYMVSVEE
Sbjct  1   MKTIKVTQIKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINQVYYMVSVEE  58


>A0A062GVY5 Large ribosomal subunit protein uL30 [Acinetobacter 
sp. 72431]
Length=58

 Score = 115 bits (289),  Expect = 2e-40
 Identities = 56/58 (97%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A1V2V5Z3 Large ribosomal subunit protein uL30 [Acinetobacter 
genomosp. 33YU]
Length=58

 Score = 115 bits (289),  Expect = 2e-40
 Identities = 56/58 (97%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>N9RD14 Large ribosomal subunit protein uL30 [Acinetobacter courvalinii]
Length=58

 Score = 115 bits (289),  Expect = 2e-40
 Identities = 56/58 (97%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>N8V730 Large ribosomal subunit protein uL30 [Acinetobacter sp. 
CIP 102082]
Length=58

 Score = 115 bits (289),  Expect = 2e-40
 Identities = 56/58 (97%), Positives = 57/58 (98%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           MKTIKVTQ KS+SHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE
Sbjct  1   MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58


>A0A0E0XV41 Large ribosomal subunit protein uL30 [Escherichia 
coli O104:H4 (strain 2011C-3493)]
Length=59

 Score = 77.0 bits (188),  Expect = 4e-25
 Identities = 39/57 (68%), Positives = 44/57 (77%), Gaps = 0/57 (0%)

Query  2   KTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           KTIK+TQ +SA  RL  HK  L GLGLRRIGHTVE +DTP+ RGMIN V +MV VEE
Sbjct  3   KTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAVSFMVKVEE  59


>A0A8B6X0Y9 Large ribosomal subunit protein uL30 [Derxia gummosa 
DSM 723]
Length=60

 Score = 55.1 bits (131),  Expect = 2e-16
 Identities = 26/56 (46%), Positives = 39/56 (70%), Gaps = 0/56 (0%)

Query  2   KTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVE  57
           K IKVT ++S     ++H+  ++GLGL+R+  + E+ DTP  RGMINKV Y++ VE
Sbjct  5   KKIKVTLVRSVIGTRESHRATVRGLGLKRLNSSRELVDTPEVRGMINKVSYLLKVE  60


>F5HRU6 Large ribosomal subunit protein uL30 [Bacillus subtilis]
Length=59

 Score = 42.4 bits (98),  Expect = 2e-11
 Identities = 21/58 (36%), Positives = 38/58 (66%), Gaps = 0/58 (0%)

Query  1   MKTIKVTQIKSASHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE  58
           M  +++T  +S   R ++ ++ ++ LGL++   TV  +D  + RGMINKV ++VSV+E
Sbjct  1   MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKE  58



Lambda      K        H        a         alpha
   0.329    0.139    0.406    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 31278


  Database: 11d090908da7ac07572c0f04c32a1163.TrEMBL.fasta
    Posted date:  May 31, 2024  5:15 PM
  Number of letters in database: 1,222
  Number of sequences in database:  21



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40