BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: a964343fb4f05bc00833f9a955a039cf.SwissProt.fasta
15 sequences; 2,974 total letters
Query= ACIAD3189
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
Q6F7U1 FAD assembly factor SdhE [Acinetobacter baylyi (strain ATC... 174 2e-62
Q4FQX4 FAD assembly factor SdhE [Psychrobacter arcticus (strain D... 90.5 4e-29
Q5NFS4 FAD assembly factor SdhE [Francisella tularensis subsp. tu... 60.5 3e-17
Q5R0Z7 FAD assembly factor SdhE [Idiomarina loihiensis (strain AT... 59.3 6e-17
Q9I5G9 FAD assembly factor SdhE [Pseudomonas aeruginosa (strain A... 55.8 1e-15
Q6D960 FAD assembly factor SdhE [Pectobacterium atrosepticum (str... 55.8 1e-15
Q8EH90 FAD assembly factor SdhE [Shewanella oneidensis (strain MR... 55.5 2e-15
Q8P8V6 FAD assembly factor SdhE [Xanthomonas campestris pv. campe... 52.4 3e-14
Q4UV74 FAD assembly factor SdhE [Xanthomonas campestris pv. campe... 52.4 3e-14
P64561 FAD assembly factor SdhE [Escherichia coli O157:H7] 52.0 4e-14
Q666S3 FAD assembly factor SdhE [Yersinia pseudotuberculosis sero... 51.6 6e-14
Q8ZHJ5 FAD assembly factor SdhE [Yersinia pestis] 51.6 6e-14
G4V4G2 FAD assembly factor SdhE [Serratia sp. (strain ATCC 39006)] 49.3 5e-13
Q92889 DNA repair endonuclease XPF [Homo sapiens] 31.2 1e-05
Q9QZD4 DNA repair endonuclease XPF [Mus musculus] 31.2 1e-05
>Q6F7U1 FAD assembly factor SdhE [Acinetobacter baylyi (strain
ATCC 33305 / BD413 / ADP1)]
Length=85
Score = 174 bits (440), Expect = 2e-62
Identities = 85/85 (100%), Positives = 85/85 (100%), Gaps = 0/85 (0%)
Query 1 MSEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDW 60
MSEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDW
Sbjct 1 MSEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDW 60
Query 61 FMEVSEPPQVELKQLIQKLKHYVHG 85
FMEVSEPPQVELKQLIQKLKHYVHG
Sbjct 61 FMEVSEPPQVELKQLIQKLKHYVHG 85
>Q4FQX4 FAD assembly factor SdhE [Psychrobacter arcticus (strain
DSM 17307 / VKM B-2377 / 273-4)]
Length=93
Score = 90.5 bits (223), Expect = 4e-29
Identities = 41/81 (51%), Positives = 58/81 (72%), Gaps = 0/81 (0%)
Query 4 ELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFME 63
E T E+R++IY+ARRGLKE+D YF+PY+K YLTA A+E+ FA+++ EDPDLLD+F
Sbjct 8 EPTNEQRRIIYQARRGLKELDFYFEPYIKELYLTAEAAEQESFAQMLTHEDPDLLDYFTN 67
Query 64 VSEPPQVELKQLIQKLKHYVH 84
S P + L+ K+K + H
Sbjct 68 QSRPEDDAMWALVNKIKTWRH 88
>Q5NFS4 FAD assembly factor SdhE [Francisella tularensis subsp.
tularensis (strain SCHU S4 / Schu 4)]
Length=95
Score = 60.5 bits (145), Expect = 3e-17
Identities = 28/69 (41%), Positives = 40/69 (58%), Gaps = 1/69 (1%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
K+ Y ARRG+ E+D+ PY+ N Y+ + K LF E + ED D+ DW + PPQ
Sbjct 15 KIKYSARRGMLELDIILAPYLNNCYMHEDLANKKLFVEFLTSEDSDMFDWLFKGVTPPQ- 73
Query 71 ELKQLIQKL 79
+QLI K+
Sbjct 74 RYQQLIDKI 82
>Q5R0Z7 FAD assembly factor SdhE [Idiomarina loihiensis (strain
ATCC BAA-735 / DSM 15497 / L2-TR)]
Length=90
Score = 59.3 bits (142), Expect = 6e-17
Identities = 28/76 (37%), Positives = 45/76 (59%), Gaps = 0/76 (0%)
Query 2 SEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWF 61
SEE ++R++ + RRG+ E+DV F+P+V Y +KA+F L+ +DPDL WF
Sbjct 7 SEEALKDKRRLRWACRRGMLELDVLFEPFVDQAYDELSEEQKAVFRRLITCDDPDLFAWF 66
Query 62 MEVSEPPQVELKQLIQ 77
M + EL ++I+
Sbjct 67 MGHQKCEDEELAEMIR 82
>Q9I5G9 FAD assembly factor SdhE [Pseudomonas aeruginosa (strain
ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228
/ 1C / PRS 101 / PAO1)]
Length=84
Score = 55.8 bits (133), Expect = 1e-15
Identities = 23/72 (32%), Positives = 45/72 (63%), Gaps = 0/72 (0%)
Query 8 EERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEP 67
E +++ + +RRG+ E+DV P+V+ Y A ++A F +L+ ED D+ WFM+ EP
Sbjct 6 ELKRLYWHSRRGMLELDVLLVPFVQEVYPGLDAEDQARFRKLLECEDQDMFGWFMQRGEP 65
Query 68 PQVELKQLIQKL 79
+L+++++ +
Sbjct 66 EDADLRRMVRMI 77
>Q6D960 FAD assembly factor SdhE [Pectobacterium atrosepticum
(strain SCRI 1043 / ATCC BAA-672)]
Length=88
Score = 55.8 bits (133), Expect = 1e-15
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
++ + RRG++E+D+ P+ ++ Y T S+K F L+ +DPDL +W M EP
Sbjct 8 RIHWACRRGMRELDIAIMPFFEHDYDTLNDSDKRAFVRLLQSDDPDLFNWLMNHGEPKDG 67
Query 71 ELKQLIQKLK 80
ELK++I ++
Sbjct 68 ELKRMISLIQ 77
>Q8EH90 FAD assembly factor SdhE [Shewanella oneidensis (strain
MR-1)]
Length=82
Score = 55.5 bits (132), Expect = 2e-15
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
+V + RRG+ E+DV F P+V N Y +K LF L+ EDP+L WFM P
Sbjct 8 RVRWACRRGMLELDVLFQPFVDNVYQDLSDEDKVLFIRLLECEDPELFAWFMGHEVCPDP 67
Query 71 ELKQLIQKLK 80
EL +++ +++
Sbjct 68 ELARMVVQVR 77
>Q8P8V6 FAD assembly factor SdhE [Xanthomonas campestris pv. campestris
(strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568
/ P 25)]
Length=86
Score = 52.4 bits (124), Expect = 3e-14
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (3%)
Query 1 MSEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDW 60
M E+ L +K+ +R RRG++E+D F Y+ + APA+E+A+F +L+ ED L W
Sbjct 5 MDEDTLL--KKLRWRCRRGMRELDQLFGRYLDRRWAQAPAAERAVFLQLLDCEDDKLWRW 62
Query 61 FMEVSEPPQVELKQLIQKLK 80
FM P + LI ++
Sbjct 63 FMGYEACPDADNAALIADIR 82
>Q4UV74 FAD assembly factor SdhE [Xanthomonas campestris pv. campestris
(strain 8004)]
Length=86
Score = 52.4 bits (124), Expect = 3e-14
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 2/80 (3%)
Query 1 MSEELTLEERKVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDW 60
M E+ L +K+ +R RRG++E+D F Y+ + APA+E+A+F +L+ ED L W
Sbjct 5 MDEDTLL--KKLRWRCRRGMRELDQLFGRYLDRRWAQAPAAERAVFLQLLDCEDDKLWRW 62
Query 61 FMEVSEPPQVELKQLIQKLK 80
FM P + LI ++
Sbjct 63 FMGYEACPDADNAALIADIR 82
>P64561 FAD assembly factor SdhE [Escherichia coli O157:H7]
Length=88
Score = 52.0 bits (123), Expect = 4e-14
Identities = 20/70 (29%), Positives = 42/70 (60%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
++ + RRG++E+D+ P+ ++ Y + EK +F L+ +DPDL +W M +P
Sbjct 8 RIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADA 67
Query 71 ELKQLIQKLK 80
EL+ +++ ++
Sbjct 68 ELEMMVRLIQ 77
>Q666S3 FAD assembly factor SdhE [Yersinia pseudotuberculosis
serotype I (strain IP32953)]
Length=88
Score = 51.6 bits (122), Expect = 6e-14
Identities = 22/70 (31%), Positives = 41/70 (59%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
++ + RRG++E+D+ P+ + Y + +EK F L+ +DPDL +W M EP
Sbjct 8 RIHWACRRGMRELDISIMPFFEYEYDSLSDNEKQAFIRLLECDDPDLFNWLMNHGEPQDS 67
Query 71 ELKQLIQKLK 80
EL Q+++ ++
Sbjct 68 ELYQMVKLIQ 77
>Q8ZHJ5 FAD assembly factor SdhE [Yersinia pestis]
Length=88
Score = 51.6 bits (122), Expect = 6e-14
Identities = 22/70 (31%), Positives = 41/70 (59%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
++ + RRG++E+D+ P+ + Y + +EK F L+ +DPDL +W M EP
Sbjct 8 RIHWACRRGMRELDISIMPFFEYEYDSLSDNEKQAFIRLLECDDPDLFNWLMNHGEPQDS 67
Query 71 ELKQLIQKLK 80
EL Q+++ ++
Sbjct 68 ELYQMVKLIQ 77
>G4V4G2 FAD assembly factor SdhE [Serratia sp. (strain ATCC 39006)]
Length=88
Score = 49.3 bits (116), Expect = 5e-13
Identities = 21/70 (30%), Positives = 39/70 (56%), Gaps = 0/70 (0%)
Query 11 KVIYRARRGLKEIDVYFDPYVKNYYLTAPASEKALFAELVAQEDPDLLDWFMEVSEPPQV 70
++ + RRG++E+D+ P+ ++ Y T +K F L+ +DPDL +W M EP
Sbjct 8 RIHWACRRGMRELDISIMPFFEHDYDTLSDDDKRNFIRLLQCDDPDLFNWLMNHGEPTDQ 67
Query 71 ELKQLIQKLK 80
LK ++ ++
Sbjct 68 GLKHMVSLIQ 77
>Q92889 DNA repair endonuclease XPF [Homo sapiens]
Length=916
Score = 31.2 bits (69), Expect = 1e-05
Identities = 21/54 (39%), Positives = 28/54 (52%), Gaps = 4/54 (7%)
Query 4 ELTLEERKVIYRARRGLKEIDVYFDPY----VKNYYLTAPASEKALFAELVAQE 53
ELT + IYRA R K + VYF Y + YLTA EK F +L+ ++
Sbjct 584 ELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREK 637
Score = 14.6 bits (26), Expect = 7.3
Identities = 5/12 (42%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 61 FMEVSEPPQVEL 72
F+E +P VE+
Sbjct 203 FLEQHKPEVVEI 214
>Q9QZD4 DNA repair endonuclease XPF [Mus musculus]
Length=917
Score = 31.2 bits (69), Expect = 1e-05
Identities = 21/54 (39%), Positives = 28/54 (52%), Gaps = 4/54 (7%)
Query 4 ELTLEERKVIYRARRGLKEIDVYFDPY----VKNYYLTAPASEKALFAELVAQE 53
ELT + IYRA R K + VYF Y + YLTA EK F +L+ ++
Sbjct 585 ELTFVRQLEIYRASRPGKPLRVYFLIYGGSTEEQRYLTALRKEKEAFEKLIREK 638
Score = 14.6 bits (26), Expect = 7.3
Identities = 5/12 (42%), Positives = 8/12 (67%), Gaps = 0/12 (0%)
Query 61 FMEVSEPPQVEL 72
F+E +P VE+
Sbjct 203 FLEQHKPEVVEI 214
Lambda K H a alpha
0.325 0.141 0.417 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 137995
Database: a964343fb4f05bc00833f9a955a039cf.SwissProt.fasta
Posted date: May 9, 2024 5:25 PM
Number of letters in database: 2,974
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
