BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 988b5fa200f1f111f91387ad95003789.TrEMBL.fasta
1 sequences; 70 total letters
Query= ACIAD3187
Length=71
Score E
Sequences producing significant alignments: (Bits) Value
Q6F7U3 Secreted protein [Acinetobacter baylyi (strain ATCC 33305 ... 141 1e-51
>Q6F7U3 Secreted protein [Acinetobacter baylyi (strain ATCC 33305
/ BD413 / ADP1)]
Length=70
Score = 141 bits (356), Expect = 1e-51
Identities = 70/70 (100%), Positives = 70/70 (100%), Gaps = 0/70 (0%)
Query 1 MRIVGQFFLIQSYFSAKVILPTTLGVKEAENGRYSNMVVSSHCVFIRSDRRTRGNCTQGL 60
MRIVGQFFLIQSYFSAKVILPTTLGVKEAENGRYSNMVVSSHCVFIRSDRRTRGNCTQGL
Sbjct 1 MRIVGQFFLIQSYFSAKVILPTTLGVKEAENGRYSNMVVSSHCVFIRSDRRTRGNCTQGL 60
Query 61 YTTTTASLRL 70
YTTTTASLRL
Sbjct 61 YTTTTASLRL 70
Lambda K H a alpha
0.334 0.141 0.420 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4160
Database: 988b5fa200f1f111f91387ad95003789.TrEMBL.fasta
Posted date: May 30, 2024 8:51 AM
Number of letters in database: 70
Number of sequences in database: 1
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
