BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 1bebb495ca384d00c2434987d2eda74a.SwissProt.fasta
18 sequences; 6,641 total letters
Query= ACIAD0002
Length=383
Score E
Sequences producing significant alignments: (Bits) Value
P0A120 Beta sliding clamp [Pseudomonas putida (strain ATCC 47054 ... 342 2e-119
P0A121 Beta sliding clamp [Pseudomonas putida] 342 2e-119
Q9I7C4 Beta sliding clamp [Pseudomonas aeruginosa (strain ATCC 15... 337 1e-117
P0A989 Beta sliding clamp [Escherichia coli O6:H1 (strain CFT073 ... 294 1e-100
P0A990 Beta sliding clamp [Escherichia coli O157:H7] 294 1e-100
P0A988 Beta sliding clamp [Escherichia coli (strain K12)] 294 1e-100
P26464 Beta sliding clamp [Salmonella typhimurium (strain LT2 / S... 291 1e-99
Q9KVX5 Beta sliding clamp [Vibrio cholerae serotype O1 (strain AT... 286 9e-98
P22838 Beta sliding clamp [Proteus mirabilis] 285 3e-97
P43744 Beta sliding clamp [Haemophilus influenzae (strain ATCC 51... 270 4e-91
P0CAU5 Beta sliding clamp [Caulobacter vibrioides (strain ATCC 19... 233 6e-77
B8GXP6 Beta sliding clamp [Caulobacter vibrioides (strain NA1000 ... 233 6e-77
Q89B36 Beta sliding clamp [Buchnera aphidicola subsp. Baizongia p... 193 2e-61
P57127 Beta sliding clamp [Buchnera aphidicola subsp. Acyrthosiph... 191 7e-61
P29439 Beta sliding clamp [Buchnera aphidicola subsp. Schizaphis ... 182 2e-57
P0A024 Beta sliding clamp [Staphylococcus aureus] 161 3e-49
P05649 Beta sliding clamp [Bacillus subtilis (strain 168)] 155 4e-47
P52023 Beta sliding clamp [Synechococcus elongatus (strain ATCC 3... 125 1e-35
>P0A120 Beta sliding clamp [Pseudomonas putida (strain ATCC 47054
/ DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)]
Length=367
Score = 342 bits (877), Expect = 2e-119
Identities = 187/379 (49%), Positives = 253/379 (67%), Gaps = 17/379 (4%)
Query 5 IAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGAC 64
I +E+LL L V G VERR TL +LSNV + Q L++TG+DLEVELV L E A
Sbjct 5 IQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPA- 63
Query 65 IEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTT 124
E GE TVPARKL+DICKSLP+ ALID+++ E Q+ ++K+G SRF L TLPA D+P T
Sbjct 64 -EPGEITVPARKLMDICKSLPNDALIDIKVDE-QKLLVKAGRSRFTLSTLPANDFP--TV 119
Query 125 ESSQGTQV-QVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLAL 183
E G+ + Q +L+RL E+TSFAMA QDVR+YL G LLE+ +N LRAV+TDGHRLAL
Sbjct 120 EEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLAL 179
Query 184 CEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHP 243
C + A Q IVPRK + EL RLL+ + +S+++G+ + T
Sbjct 180 CSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTG---------- 229
Query 244 ITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNP 303
FT+KL+DGKFPDY RV+P+GGDK V +++ R AILSNEK RG+ L
Sbjct 230 -EFTFTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAA 288
Query 304 DVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEANQSV 363
L+++ANNPEQ+EA E+I++ Y+ +SLE+ FN YLLDVL V+ + V + ++++N S
Sbjct 289 GQLKIQANNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSA 348
Query 364 LVQDAAHPDQTYVVMPMRV 382
L+Q+A + D +YVVMPMR+
Sbjct 349 LLQEAGNDDSSYVVMPMRL 367
>P0A121 Beta sliding clamp [Pseudomonas putida]
Length=367
Score = 342 bits (877), Expect = 2e-119
Identities = 187/379 (49%), Positives = 253/379 (67%), Gaps = 17/379 (4%)
Query 5 IAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGAC 64
I +E+LL L V G VERR TL +LSNV + Q L++TG+DLEVELV L E A
Sbjct 5 IQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLEEPA- 63
Query 65 IEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTT 124
E GE TVPARKL+DICKSLP+ ALID+++ E Q+ ++K+G SRF L TLPA D+P T
Sbjct 64 -EPGEITVPARKLMDICKSLPNDALIDIKVDE-QKLLVKAGRSRFTLSTLPANDFP--TV 119
Query 125 ESSQGTQV-QVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLAL 183
E G+ + Q +L+RL E+TSFAMA QDVR+YL G LLE+ +N LRAV+TDGHRLAL
Sbjct 120 EEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLRAVSTDGHRLAL 179
Query 184 CEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHP 243
C + A Q IVPRK + EL RLL+ + +S+++G+ + T
Sbjct 180 CSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTG---------- 229
Query 244 ITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNP 303
FT+KL+DGKFPDY RV+P+GGDK V +++ R AILSNEK RG+ L
Sbjct 230 -EFTFTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAA 288
Query 304 DVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEANQSV 363
L+++ANNPEQ+EA E+I++ Y+ +SLE+ FN YLLDVL V+ + V + ++++N S
Sbjct 289 GQLKIQANNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSA 348
Query 364 LVQDAAHPDQTYVVMPMRV 382
L+Q+A + D +YVVMPMR+
Sbjct 349 LLQEAGNDDSSYVVMPMRL 367
>Q9I7C4 Beta sliding clamp [Pseudomonas aeruginosa (strain ATCC
15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C
/ PRS 101 / PAO1)]
Length=367
Score = 337 bits (865), Expect = 1e-117
Identities = 180/379 (47%), Positives = 250/379 (66%), Gaps = 17/379 (4%)
Query 5 IAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGAC 64
I +E+LL L V G VERR TL +LSNV + Q L++TG+DLEVELV L + A
Sbjct 5 IQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLEDAA- 63
Query 65 IEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTT 124
E GE TVPARKL+DICKSLP+ LID+++ E+Q+ ++K+G SRF L TLPA D+P T
Sbjct 64 -EPGEITVPARKLMDICKSLPNDVLIDIRV-EEQKLLVKAGRSRFTLSTLPANDFP--TV 119
Query 125 ESSQGT-QVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLAL 183
E G+ + Q +L+RL ++TSFAMA QDVR+YL G LLE++ LR+V TDGHRLA+
Sbjct 120 EEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLRSVATDGHRLAM 179
Query 184 CEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHP 243
C + A + Q IVPRK + EL RLL+ +D ++ +++G+ + T
Sbjct 180 CSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTG---------- 229
Query 244 ITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNP 303
FT+KL+DGKFPDY RV+PRGGDK V +++ R AILSNEK RG+ L +
Sbjct 230 -EFTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSN 288
Query 304 DVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEANQSV 363
+L+++ANNPEQ+EA E++ ++Y +LE+ FN YLLDVL V+ + V ++++N S
Sbjct 289 GLLKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGTEQVRFILSDSNSSA 348
Query 364 LVQDAAHPDQTYVVMPMRV 382
LV +A + D YVVMPMR+
Sbjct 349 LVHEADNDDSAYVVMPMRL 367
>P0A989 Beta sliding clamp [Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC)]
Length=366
Score = 294 bits (752), Expect = 1e-100
Identities = 168/382 (44%), Positives = 237/382 (62%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA L
Sbjct 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ E G TTVPARK DIC+ LP A I +Q+ E +R +++SG SRF L TLPA D+P
Sbjct 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L S+ + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR
Sbjct 118 NLDDWQSE-VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+C + + + + IVPRK V EL R+L D+ L + IG N+ ++ +
Sbjct 177 LAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGD---- 229
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
FT+KL+DG+FPDYRRV+P+ DKH++ D+ KQ+ R AILSNEK RGV L
Sbjct 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ + L++ ANNPEQ+EA E + + Y A +E+ FN Y+LDVL+ L ++V M +T++
Sbjct 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
SV ++DAA YVVMPMR+
Sbjct 345 SSVQIEDAASQSAAYVVMPMRL 366
>P0A990 Beta sliding clamp [Escherichia coli O157:H7]
Length=366
Score = 294 bits (752), Expect = 1e-100
Identities = 168/382 (44%), Positives = 237/382 (62%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA L
Sbjct 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ E G TTVPARK DIC+ LP A I +Q+ E +R +++SG SRF L TLPA D+P
Sbjct 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L S+ + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR
Sbjct 118 NLDDWQSE-VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+C + + + + IVPRK V EL R+L D+ L + IG N+ ++ +
Sbjct 177 LAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGD---- 229
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
FT+KL+DG+FPDYRRV+P+ DKH++ D+ KQ+ R AILSNEK RGV L
Sbjct 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ + L++ ANNPEQ+EA E + + Y A +E+ FN Y+LDVL+ L ++V M +T++
Sbjct 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
SV ++DAA YVVMPMR+
Sbjct 345 SSVQIEDAASQSAAYVVMPMRL 366
>P0A988 Beta sliding clamp [Escherichia coli (strain K12)]
Length=366
Score = 294 bits (752), Expect = 1e-100
Identities = 168/382 (44%), Positives = 237/382 (62%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA L
Sbjct 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ E G TTVPARK DIC+ LP A I +Q+ E +R +++SG SRF L TLPA D+P
Sbjct 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGERMLVRSGRSRFSLSTLPAADFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L S+ + + Q +KRL E T F+MA QDVR+YL G L E + +LR V TDGHR
Sbjct 118 NLDDWQSE-VEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+C + + + + IVPRK V EL R+L D+ L + IG N+ ++ +
Sbjct 177 LAVCSMPIGQS-LPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSN--NIRAHVGD---- 229
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
FT+KL+DG+FPDYRRV+P+ DKH++ D+ KQ+ R AILSNEK RGV L
Sbjct 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLY 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ + L++ ANNPEQ+EA E + + Y A +E+ FN Y+LDVL+ L ++V M +T++
Sbjct 285 VSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCENVRMMLTDSV 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
SV ++DAA YVVMPMR+
Sbjct 345 SSVQIEDAASQSAAYVVMPMRL 366
>P26464 Beta sliding clamp [Salmonella typhimurium (strain LT2
/ SGSC1412 / ATCC 700720)]
Length=366
Score = 291 bits (746), Expect = 1e-99
Identities = 166/382 (43%), Positives = 238/382 (62%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ + +E LL L V G + R TL IL N+ +Q L++TG+DLE+E+VA TL+
Sbjct 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ E G TTVPARK DIC+ LP A I +Q+ E R +++SG SRF L TLPA D+P
Sbjct 61 QPH--EPGATTVPARKFFDICRGLPEGAEIAVQL-EGDRMLVRSGRSRFSLSTLPAADFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L S+ + + Q +KRL E T F+MA QDVR+YL G L E + ++LR V TDGHR
Sbjct 118 NLDDWQSE-VEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELRTVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+C + ++ + + IVPRK V EL R+L ++ L + IG N+ ++ +
Sbjct 177 LAVCSMPLEAS-LPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSN--NIRAHVGD---- 229
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
FT+KL+DG+FPDYRRV+P+ DKH++ D+ KQ+ R AILSNEK RGV L
Sbjct 230 -----FIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLY 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ + L++ ANNPEQ+EA E + + Y +E+ FN Y+LDVL+ L + V + +T++
Sbjct 285 VSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETVRIMLTDSV 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
SV ++DAA YVVMPMR+
Sbjct 345 SSVQIEDAASQSAAYVVMPMRL 366
>Q9KVX5 Beta sliding clamp [Vibrio cholerae serotype O1 (strain
ATCC 39315 / El Tor Inaba N16961)]
Length=366
Score = 286 bits (733), Expect = 9e-98
Identities = 167/382 (44%), Positives = 237/382 (62%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ I + L+ L V G + R +L IL N+ ++ L++T +DLEVEL++ TL
Sbjct 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTL- 59
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
EG EAG TVPARK +DIC+ LP +A+I + + E R ++SG SRF L TLPA D+P
Sbjct 60 EGE-FEAGSITVPARKFLDICRGLPDSAVITV-LLEGDRIQVRSGRSRFSLATLPASDFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
+ S+ QV +TQ EL+ L EKT F+MA QDVR+YL G L EID LR+V TDGHR
Sbjct 118 NIEDWQSE-VQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLRSVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
+A+ + Q + Q Q IVPRK V EL +LL + + L IG L +N
Sbjct 177 MAVAQAQLGADFAQK-QIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVN------- 228
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
H + FT+KL+DG+FPDYRRV+P+ K +Q + +Q+ R AILSNEK RGV +N
Sbjct 229 -HFV---FTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVN 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ +++ ANNPEQ+EA E + + ++ +E+ FN Y+LDVL+ L D+V +SM++AN
Sbjct 285 LADNGMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNVRVSMSDAN 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
S LV++ YVVMP+R+
Sbjct 345 ASALVENVDDDSAMYVVMPIRL 366
>P22838 Beta sliding clamp [Proteus mirabilis]
Length=367
Score = 285 bits (730), Expect = 3e-97
Identities = 165/378 (44%), Positives = 227/378 (60%), Gaps = 15/378 (4%)
Query 5 IAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGAC 64
I +E LL L V G + R TL IL N+ ++ L++TG+DLE+E++A +L++
Sbjct 5 IEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLSQSH- 63
Query 65 IEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTT 124
E G TTVPARK DI + LP A I +++ D R +++SG SRF L TLPA D+P L
Sbjct 64 -EIGATTVPARKFFDIWRGLPEGAEISVELDGD-RLLVRSGRSRFSLSTLPASDFPNLDD 121
Query 125 ESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLALC 184
S+ + + Q LKRL E T F+MA QDVR+YL G L E + +LR V TDGHRLA+C
Sbjct 122 WQSE-VEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETENTELRTVATDGHRLAVC 180
Query 185 EVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHPI 244
+ + + IVPRK V EL RLL + L + + I + + H
Sbjct 181 AMDIGQS-LPGHSVIVPRKGVIELMRLLDGSGESL----------LQLQIGSNNLRAHVG 229
Query 245 TVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNPD 304
FT+KL+DG+FPDYRRV+P+ K V D+ KQ+ R AILSNEK RGV +N
Sbjct 230 DFIFTSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNG 289
Query 305 VLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEANQSVL 364
L++ ANNPEQ+EA E + +QYQ +E+ FN YLLDVL+ L ++V + +T+A SV
Sbjct 290 QLKITANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEVKLLLTDAVSSVQ 349
Query 365 VQDAAHPDQTYVVMPMRV 382
V++ A YVVMPMR+
Sbjct 350 VENVASAAAAYVVMPMRL 367
>P43744 Beta sliding clamp [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=366
Score = 270 bits (689), Expect = 4e-91
Identities = 157/382 (41%), Positives = 224/382 (59%), Gaps = 16/382 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ I++E+LL L V G + R + +L+NV +Q LTITG+DLEVEL + T L+
Sbjct 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ E G T+PA+K +DIC++L + I + +D R +++SG SRF L T PAE+YP
Sbjct 61 SSS--ENGTFTIPAKKFLDICRTLSDDSEITVTFEQD-RALVQSGRSRFTLATQPAEEYP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
LT S+ ++ Q L+RL E T F+MA QD R++L G E + N LR V TDGHR
Sbjct 118 NLTDWQSE-VDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTVATDGHR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+C + +Q I+PRK V EL RLL D+ L IG L V
Sbjct 177 LAVCTISLEQE-LQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRV---------- 225
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
H FT+KLIDG+FPDYRRV+PR K V+ ++ KQ+ R +ILSNE+ R V L+
Sbjct 226 -HLKNTVFTSKLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLS 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
+ L++ A+N E +EA E + + Y LE+ FN Y+LDVL+ L + V M +T+A
Sbjct 285 LKENQLKITASNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCNQVRMCLTDAF 344
Query 361 QSVLVQDAAHPDQTYVVMPMRV 382
S L+++ YV+MPMR+
Sbjct 345 SSCLIENCEDSSCEYVIMPMRL 366
>P0CAU5 Beta sliding clamp [Caulobacter vibrioides (strain ATCC
19089 / CB15)]
Length=372
Score = 233 bits (595), Expect = 6e-77
Identities = 140/389 (36%), Positives = 216/389 (56%), Gaps = 24/389 (6%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++L I + +LL L HV VERR+T+ ILSN+ + A L+ + +DL++E++
Sbjct 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIID----- 55
Query 61 EG-ACIEA-GETTVPARKLVDICKSLPSAALIDLQIT-EDQRCILKSGNSRFVLGTLPAE 117
EG A I+ G+ T PA L +I + LP A + L + +D R ++++G SRF L LPA
Sbjct 56 EGFAQIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAG 115
Query 118 DYPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTG----TLLEIDQNQLRA 173
D+P+++++ +++ V EL RL +KT FA++ ++ R+YL G T+ E + +LRA
Sbjct 116 DFPVMSSDGLS-SRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRA 174
Query 174 VTTDGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTIN 233
V TDGHRLAL E+ A A+ IVPRK + E +RL+ + + L + + +
Sbjct 175 VATDGHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFG 234
Query 234 IANRDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEK 293
A T+K+IDG FPDY RVIPR K + + +D+F +++ RVA +S EK
Sbjct 235 AA-----------ALTSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEK 283
Query 294 LRGVFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVS 353
R V L P + L N E +A+E++ + Y E+ FNA+YLLDV + G
Sbjct 284 SRSVKLAVEPGRITLTVRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAE 343
Query 354 MSMTEANQSVLVQDAAHPDQTYVVMPMRV 382
+ LV D P YV+MP+RV
Sbjct 344 FRFADPASPTLVVDPVDPGVKYVLMPLRV 372
>B8GXP6 Beta sliding clamp [Caulobacter vibrioides (strain NA1000
/ CB15N)]
Length=372
Score = 233 bits (595), Expect = 6e-77
Identities = 140/389 (36%), Positives = 216/389 (56%), Gaps = 24/389 (6%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++L I + +LL L HV VERR+T+ ILSN+ + A L+ + +DL++E++
Sbjct 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIID----- 55
Query 61 EG-ACIEA-GETTVPARKLVDICKSLPSAALIDLQIT-EDQRCILKSGNSRFVLGTLPAE 117
EG A I+ G+ T PA L +I + LP A + L + +D R ++++G SRF L LPA
Sbjct 56 EGFAQIDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDDPRLVIQAGRSRFNLPVLPAG 115
Query 118 DYPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTG----TLLEIDQNQLRA 173
D+P+++++ +++ V EL RL +KT FA++ ++ R+YL G T+ E + +LRA
Sbjct 116 DFPVMSSDGLS-SRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRA 174
Query 174 VTTDGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTIN 233
V TDGHRLAL E+ A A+ IVPRK + E +RL+ + + L + + +
Sbjct 175 VATDGHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFG 234
Query 234 IANRDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEK 293
A T+K+IDG FPDY RVIPR K + + +D+F +++ RVA +S EK
Sbjct 235 AA-----------ALTSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEK 283
Query 294 LRGVFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVS 353
R V L P + L N E +A+E++ + Y E+ FNA+YLLDV + G
Sbjct 284 SRSVKLAVEPGRITLTVRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAGPQAE 343
Query 354 MSMTEANQSVLVQDAAHPDQTYVVMPMRV 382
+ LV D P YV+MP+RV
Sbjct 344 FRFADPASPTLVVDPVDPGVKYVLMPLRV 372
>Q89B36 Beta sliding clamp [Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp)]
Length=371
Score = 193 bits (490), Expect = 2e-61
Identities = 119/386 (31%), Positives = 213/386 (55%), Gaps = 23/386 (6%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ +I + L+ L V + R H IL N+ + A +T+T +++++E+ +
Sbjct 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEI--KIIIL 58
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
+ +E G TV +K+++IC++LP + +Q ++ I+ S N++++L TLP +++P
Sbjct 59 DVTLLEPGSITVSGKKILNICQNLPKDHNLKIQYINNKLKIV-SHNNQYLLATLPIKNFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L +Q V ++Q +LK + T F+MA+QD+R +L G E+ L AV TDG+R
Sbjct 118 NLKISENQNNFV-ISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHLYAVATDGYR 176
Query 181 LALCEVQASSTAMQAVQAIV-PRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDK 239
+A+C+ + + +I+ PRK V EL +LL+ ++ +S INI+N
Sbjct 177 IAICKKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVIS-----------INISNNYF 225
Query 240 EQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFL 299
+ + FT+K+I KFPDY +I K + + +FK++L RVAILSNE RGV +
Sbjct 226 QIEFKNLIFTSKIITEKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNI 285
Query 300 NFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEA 359
+ + L + +N +EA E I I Y + ++MS NA Y++D+L+ + ++ +S +
Sbjct 286 KNDQNKLLITTSNQHDEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEICLSKNDV 345
Query 360 NQSVLVQDAAH-----PDQTYVVMPM 380
S+ +Q AH P Y++MP+
Sbjct 346 THSIQIQ--AHHYKIAPKAIYIIMPL 369
>P57127 Beta sliding clamp [Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS)]
Length=366
Score = 191 bits (486), Expect = 7e-61
Identities = 117/372 (31%), Positives = 211/372 (57%), Gaps = 16/372 (4%)
Query 10 LLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLAEGACIEAGE 69
L+ L + + + +L IL NV I L++TG++LE+ELVA L+ +G
Sbjct 10 LIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHI--SGT 67
Query 70 TTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYPLLTTESSQG 129
T+ RKL+DIC++ +++ I++Q+ ++ I+ SGNSR++L TLP + +P+ +
Sbjct 68 ATISGRKLLDICRNSLNSSNIEMQLNNNKMHII-SGNSRYILTTLPYDSFPV-HHDFHHI 125
Query 130 TQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHRLALCEVQAS 189
++ + LK++ EK F+MA QDVR+YL G LLE L AV TDG+RL + +
Sbjct 126 SEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLEKTDRSLYAVATDGYRLGISKFFLK 185
Query 190 STAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKEQHPITVRFT 249
+ ++PRK V EL RLL+I + +L+G+ N+ ++I + + FT
Sbjct 186 ENIIP-FSIVIPRKGVIELYRLLNIPKQPIKVLVGKN--NIRVHIED---------LIFT 233
Query 250 TKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLNFNPDVLQLR 309
T+LI+G++PDY+ V+ + + + + KQSL R AILS+EK GV ++ ++
Sbjct 234 TQLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVL 293
Query 310 ANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEANQSVLVQDAA 369
++N E++ A + I Y ++++S N Y++++L+ + +++ + + AN S+ ++
Sbjct 294 SDNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITSENIFLFLNNANNSIQIEAEN 353
Query 370 HPDQTYVVMPMR 381
YVVM ++
Sbjct 354 DASILYVVMLLK 365
>P29439 Beta sliding clamp [Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg)]
Length=366
Score = 182 bits (463), Expect = 2e-57
Identities = 111/381 (29%), Positives = 207/381 (54%), Gaps = 16/381 (4%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ I + L L + + + + IL N+ IQ L++T ++LE+EL++ +
Sbjct 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60
Query 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
G+TT+ RK+++IC++L + I +Q+ ++++ + S NS ++L TL A+ +P
Sbjct 61 TKYI--PGKTTISGRKILNICRTLSEKSKIKMQL-KNKKMYISSENSNYILSTLSADTFP 117
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
++ ++ LK + EKT F+M QDVR+YL G LLE LR+V TDG+R
Sbjct 118 N-HQNFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLRSVATDGYR 176
Query 181 LALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDKE 240
LA+ Q + I+P KAV EL +LL+ + L++LIG + +
Sbjct 177 LAISYTQLKKD-INFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRI---------- 225
Query 241 QHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFLN 300
+ + FTT+LI+G++PDY+ V+ + + + K+SL RVAIL++EK G+ +
Sbjct 226 -YTKNLIFTTQLIEGEYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIK 284
Query 301 FNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMTEAN 360
++ ++N E++ A + I Y +E+S N YLLDV++ + +++++ + ++
Sbjct 285 IENGKFKVLSDNQEEETAEDLFEIDYFGEKIEISINVYYLLDVINNIKSENIALFLNKSK 344
Query 361 QSVLVQDAAHPDQTYVVMPMR 381
S+ ++ + YVVM ++
Sbjct 345 SSIQIEAENNSSNAYVVMLLK 365
>P0A024 Beta sliding clamp [Staphylococcus aureus]
Length=377
Score = 161 bits (408), Expect = 3e-49
Identities = 106/384 (28%), Positives = 195/384 (51%), Gaps = 21/384 (5%)
Query 5 IAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVEL-VASTTLAEGA 63
I ++ + L+ + A+ R TL IL+ +KI A + +TGSD E+ + + +G
Sbjct 6 IKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKTVDGE 65
Query 64 CI----EAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDY 119
I E G +P R VDI K LP + L E + ++ SG+S F L L + Y
Sbjct 66 DIVNISETGSVVLPGRFFVDIIKKLPGKD-VKLSTNEQFQTLITSGHSEFNLSGLDPDQY 124
Query 120 PLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGH 179
PLL + S+ +Q++ + LK + +T+FA++ + R LTG I +N+L TD H
Sbjct 125 PLLP-QVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSH 183
Query 180 RLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDK 239
RLA+ ++Q + + I+P KA+ EL +++S ++ + + V + N
Sbjct 184 RLAVRKLQLEDVS-ENKNVIIPGKALAELNKIMSDNEEDIDIFFASN--QVLFKVGN--- 237
Query 240 EQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVF- 298
V F ++L++G +PD R+ P + + I + F ++ R ++L+ E V
Sbjct 238 ------VNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIK 291
Query 299 LNFNPDVLQLRANNPEQDEAIEDI-AIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMT 357
L+ DV++L + +PE E++ A + SL++SFN++Y++D L +D D+V +
Sbjct 292 LSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFF 351
Query 358 EANQSVLVQDAAHPDQTYVVMPMR 381
+ +++ T +++P+R
Sbjct 352 GTMKPFILKPKGDDSVTQLILPIR 375
>P05649 Beta sliding clamp [Bacillus subtilis (strain 168)]
Length=378
Score = 155 bits (393), Expect = 4e-47
Identities = 105/389 (27%), Positives = 199/389 (51%), Gaps = 21/389 (5%)
Query 1 VRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60
++ I K+ L+ + V+ AV R T+ IL+ +KI A+ ++ TGSD ++ + +
Sbjct 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60
Query 61 EG-----ACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLP 115
EG + G + AR +I K LP A +++++ I++SG + F L L
Sbjct 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMAT-VEIEVQNQYLTIIRSGKAEFNLNGLD 119
Query 116 AEDYPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVT 175
A++YP L + + +Q+ LK L +T FA++ + R LTG +++Q++L
Sbjct 120 ADEYPHLP-QIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSELLCTA 178
Query 176 TDGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIA 235
TD HRLAL + + ++ ++P K++ EL ++L + + ++I V
Sbjct 179 TDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITE--TQVLFKAK 236
Query 236 NRDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLR 295
N V F ++L+DG +PD +IP+ + + F Q++ R ++L+ E
Sbjct 237 N---------VLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRN 287
Query 296 GVF-LNFNP-DVLQLRANNPEQDEAIEDI-AIQYQDASLEMSFNAQYLLDVLSVLDGDDV 352
V L+ P + +++ +N+PE + +E I A Q + L +SF+ +Y+LD L VL+G ++
Sbjct 288 NVVKLSAKPAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEI 347
Query 353 SMSMTEANQSVLVQDAAHPDQTYVVMPMR 381
+S T A + L++ +++P+R
Sbjct 348 RVSFTGAMRPFLIRTPNDETIVQLILPVR 376
>P52023 Beta sliding clamp [Synechococcus elongatus (strain ATCC
33912 / PCC 7942 / FACHB-805)]
Length=375
Score = 125 bits (313), Expect = 1e-35
Identities = 98/385 (25%), Positives = 194/385 (50%), Gaps = 22/385 (6%)
Query 5 IAKESLLNV-LSHVVGAVERRHTLNILSNVKIQANA--QALTITGSDLEVELVASTTLAE 61
+ +++ LN LS V AV R +L+NV + A+A Q L++T DL + + S
Sbjct 4 VCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA--- 60
Query 62 GACIE-AGETTVPARKLVDICKSLPSAALIDLQITEDQRCILKSGNSRFVLGTLPAEDYP 120
A +E +G T+PA+ L DI LP+ + + L+ D L G+ ++ + + A+++P
Sbjct 61 -AQVERSGAITLPAKLLNDIVSRLPNDSDVTLE-DNDAAATLSVGSGQYQMRGISADEFP 118
Query 121 LLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLRAVTTDGHR 180
L SQ +Q++ L T FA + + + LTG L++ + L TDGHR
Sbjct 119 ELPLVQSQEA-LQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAATDGHR 177
Query 181 LALCEVQ-ASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIANRDK 239
LA+ + + A++T VP +A+ +L+R+++I ++ + + ++
Sbjct 178 LAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ-- 235
Query 240 EQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRGVFL 299
T++ +DG++P+Y ++IPR +++V + +L+R+A+L++++ + L
Sbjct 236 -------YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRL 288
Query 300 NFNPDVLQLRANNPEQD--EAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDGDDVSMSMT 357
+ +P+ +L QD E + + LE++FN +YL + L L+ D+ + +
Sbjct 289 SLDPENNRLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTDIQIQLN 348
Query 358 EANQSVLVQDAAHPDQTYVVMPMRV 382
V++ TY+VMP+++
Sbjct 349 SNTSPVVLSPLGPVKITYLVMPIQL 373
Lambda K H a alpha
0.320 0.134 0.364 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1911753
Database: 1bebb495ca384d00c2434987d2eda74a.SwissProt.fasta
Posted date: May 8, 2024 10:27 AM
Number of letters in database: 6,641
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
