BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: ba944c56da596be6313a7f3c079aa931.SwissProt.fasta
20 sequences; 4,186 total letters
Query= ACIAD0026
Length=206
Score E
Sequences producing significant alignments: (Bits) Value
Q8X4Z7 HTH-type transcriptional regulator RutR [Escherichia coli ... 176 2e-59
P0ACU4 HTH-type transcriptional regulator RutR [Shigella flexneri] 176 3e-59
P0ACU3 HTH-type transcriptional regulator RutR [Escherichia coli ... 176 3e-59
P0ACU2 HTH-type transcriptional regulator RutR [Escherichia coli ... 176 3e-59
P32398 Uncharacterized HTH-type transcriptional regulator YhgD [B... 55.1 5e-13
Q88FX7 HTH-type transcriptional repressor NicS [Pseudomonas putid... 51.6 1e-11
P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri] 50.4 3e-11
P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli ... 50.4 3e-11
P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli ... 50.4 3e-11
P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli ... 50.4 3e-11
Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium sp.... 50.4 3e-11
P39885 HTH-type transcriptional regulator TcmR [Streptomyces glau... 47.4 4e-10
Q9ADP7 HTH-type transcriptional repressor SCO4008 [Streptomyces c... 47.0 4e-10
P95251 Transcriptional repressor Mce3R [Mycobacterium tuberculosi... 47.0 8e-10
P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus au... 45.8 1e-09
P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus ha... 45.8 1e-09
P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus au... 45.8 1e-09
P96701 Uncharacterized HTH-type transcriptional regulator YdgC [B... 45.8 1e-09
Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional r... 45.4 1e-09
Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional r... 45.4 1e-09
>Q8X4Z7 HTH-type transcriptional regulator RutR [Escherichia coli
O157:H7]
Length=212
Score = 176 bits (446), Expect = 2e-59
Identities = 86/195 (44%), Positives = 131/195 (67%), Gaps = 1/195 (1%)
Query 9 KRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKWL 68
K+ +L+AALD FS +GF G L++IA+LA + K+N+ YY+ +KEALY+ VL +L WL
Sbjct 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWL 78
Query 69 APLQTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEILKGPLKKLF 128
APL+ + P A+ Y+ K+EVSR P+AS+LF +E++ GAP +++ L G LK L
Sbjct 79 APLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKSLI 138
Query 129 KRKAKVIQTWQEQGKISADIDPELLILNIWAITQNYADFSIQMEMVTGKTLKNKSMHQRA 188
K+ +I W + GK+ A IDP+ LI IWA TQ+YADF+ Q+E VTG TL+++ +
Sbjct 139 DEKSALIAGWVKSGKL-APIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQT 197
Query 189 IEHTVHMMLYGVIPR 203
+E+ +++ G+ PR
Sbjct 198 VENVQRIIIEGIRPR 212
>P0ACU4 HTH-type transcriptional regulator RutR [Shigella flexneri]
Length=212
Score = 176 bits (445), Expect = 3e-59
Identities = 86/195 (44%), Positives = 131/195 (67%), Gaps = 1/195 (1%)
Query 9 KRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKWL 68
K+ +L+AALD FS +GF G L++IA+LA + K+N+ YY+ +KEALY+ VL +L WL
Sbjct 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWL 78
Query 69 APLQTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEILKGPLKKLF 128
APL+ + P A+ Y+ K+EVSR P+AS+LF +E++ GAP +++ L G LK L
Sbjct 79 APLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALI 138
Query 129 KRKAKVIQTWQEQGKISADIDPELLILNIWAITQNYADFSIQMEMVTGKTLKNKSMHQRA 188
K+ +I W + GK+ A IDP+ LI IWA TQ+YADF+ Q+E VTG TL+++ +
Sbjct 139 DEKSALIAGWVKSGKL-APIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQT 197
Query 189 IEHTVHMMLYGVIPR 203
+E+ +++ G+ PR
Sbjct 198 VENVQRIIIEGIRPR 212
>P0ACU3 HTH-type transcriptional regulator RutR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=212
Score = 176 bits (445), Expect = 3e-59
Identities = 86/195 (44%), Positives = 131/195 (67%), Gaps = 1/195 (1%)
Query 9 KRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKWL 68
K+ +L+AALD FS +GF G L++IA+LA + K+N+ YY+ +KEALY+ VL +L WL
Sbjct 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWL 78
Query 69 APLQTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEILKGPLKKLF 128
APL+ + P A+ Y+ K+EVSR P+AS+LF +E++ GAP +++ L G LK L
Sbjct 79 APLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALI 138
Query 129 KRKAKVIQTWQEQGKISADIDPELLILNIWAITQNYADFSIQMEMVTGKTLKNKSMHQRA 188
K+ +I W + GK+ A IDP+ LI IWA TQ+YADF+ Q+E VTG TL+++ +
Sbjct 139 DEKSALIAGWVKSGKL-APIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQT 197
Query 189 IEHTVHMMLYGVIPR 203
+E+ +++ G+ PR
Sbjct 198 VENVQRIIIEGIRPR 212
>P0ACU2 HTH-type transcriptional regulator RutR [Escherichia coli
(strain K12)]
Length=212
Score = 176 bits (445), Expect = 3e-59
Identities = 86/195 (44%), Positives = 131/195 (67%), Gaps = 1/195 (1%)
Query 9 KRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKWL 68
K+ +L+AALD FS +GF G L++IA+LA + K+N+ YY+ +KEALY+ VL +L WL
Sbjct 19 KKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWL 78
Query 69 APLQTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEILKGPLKKLF 128
APL+ + P A+ Y+ K+EVSR P+AS+LF +E++ GAP +++ L G LK L
Sbjct 79 APLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALI 138
Query 129 KRKAKVIQTWQEQGKISADIDPELLILNIWAITQNYADFSIQMEMVTGKTLKNKSMHQRA 188
K+ +I W + GK+ A IDP+ LI IWA TQ+YADF+ Q+E VTG TL+++ +
Sbjct 139 DEKSALIAGWVKSGKL-APIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQT 197
Query 189 IEHTVHMMLYGVIPR 203
+E+ +++ G+ PR
Sbjct 198 VENVQRIIIEGIRPR 212
>P32398 Uncharacterized HTH-type transcriptional regulator YhgD
[Bacillus subtilis (strain 168)]
Length=191
Score = 55.1 bits (131), Expect = 5e-13
Identities = 37/148 (25%), Positives = 71/148 (48%), Gaps = 2/148 (1%)
Query 6 STQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQ 65
S ++ +L AA F+ +G+ ++D +A+LA + K I+ +++NKE L+ E+ TT+L+
Sbjct 2 SIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLLK 61
Query 66 KWLAPL-QTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEILKGPL 124
+ + +E L E + L +E +T K+F G + E+++
Sbjct 62 EMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKME 121
Query 125 KKLFKRKAKVIQTWQEQGKISADIDPEL 152
+ + I+ + G I DPEL
Sbjct 122 RSILSYIKSKIEDGIKSGAIK-PCDPEL 148
>Q88FX7 HTH-type transcriptional repressor NicS [Pseudomonas putida
(strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950
/ KT2440)]
Length=212
Score = 51.6 bits (122), Expect = 1e-11
Identities = 26/82 (32%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query 4 KKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTV 63
+++ + R+ +L AA+ VFS GF+G +++I+ LA+ + I+YY+ +KE L++ VL +
Sbjct 11 QQADRTRDNILKAAVKVFSKEGFTGGRIEQISTLAKSNDRMIYYYFGSKEKLFISVLEHI 70
Query 64 LQKWLAPLQTLEVEL-EPTEAL 84
+ L ++L +P +AL
Sbjct 71 YASFNQAEAKLRLDLADPEQAL 92
>P0ACT9 HTH-type transcriptional regulator UidR [Shigella flexneri]
Length=196
Score = 50.4 bits (119), Expect = 3e-11
Identities = 36/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTT 62
Q ++ R ++LNAA ++FS GF AS+ I + + +++++ +KEAL ++
Sbjct 6 QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65
Query 63 VLQKWLAPLQTLEVELEPTEAL--AHYLIQKIEVSRTQPKASKLFALEIIQGA---PHIL 117
++ LA + EP E + Y+++ I + + +EI+ P +
Sbjct 66 DQERALARFR------EPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVA 119
Query 118 EILKGPLKKLFKRKAKVIQTWQEQGKISADID 149
+LK + + A+ ++ Q++G+IS DI+
Sbjct 120 AMLKNKHMTITEFVAQRMRDAQQKGEISPDIN 151
>P0ACT6 HTH-type transcriptional regulator UidR [Escherichia coli
(strain K12)]
Length=196
Score = 50.4 bits (119), Expect = 3e-11
Identities = 36/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTT 62
Q ++ R ++LNAA ++FS GF AS+ I + + +++++ +KEAL ++
Sbjct 6 QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65
Query 63 VLQKWLAPLQTLEVELEPTEAL--AHYLIQKIEVSRTQPKASKLFALEIIQGA---PHIL 117
++ LA + EP E + Y+++ I + + +EI+ P +
Sbjct 66 DQERALARFR------EPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVA 119
Query 118 EILKGPLKKLFKRKAKVIQTWQEQGKISADID 149
+LK + + A+ ++ Q++G+IS DI+
Sbjct 120 AMLKNKHMTITEFVAQRMRDAQQKGEISPDIN 151
>P0ACT7 HTH-type transcriptional regulator UidR [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=196
Score = 50.4 bits (119), Expect = 3e-11
Identities = 36/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTT 62
Q ++ R ++LNAA ++FS GF AS+ I + + +++++ +KEAL ++
Sbjct 6 QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65
Query 63 VLQKWLAPLQTLEVELEPTEAL--AHYLIQKIEVSRTQPKASKLFALEIIQGA---PHIL 117
++ LA + EP E + Y+++ I + + +EI+ P +
Sbjct 66 DQERALARFR------EPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVA 119
Query 118 EILKGPLKKLFKRKAKVIQTWQEQGKISADID 149
+LK + + A+ ++ Q++G+IS DI+
Sbjct 120 AMLKNKHMTITEFVAQRMRDAQQKGEISPDIN 151
>P0ACT8 HTH-type transcriptional regulator UidR [Escherichia coli
O157:H7]
Length=196
Score = 50.4 bits (119), Expect = 3e-11
Identities = 36/152 (24%), Positives = 75/152 (49%), Gaps = 11/152 (7%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTT 62
Q ++ R ++LNAA ++FS GF AS+ I + + +++++ +KEAL ++
Sbjct 6 QTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAISPGTLYHHFISKEALIQAIILQ 65
Query 63 VLQKWLAPLQTLEVELEPTEAL--AHYLIQKIEVSRTQPKASKLFALEIIQGA---PHIL 117
++ LA + EP E + Y+++ I + + +EI+ P +
Sbjct 66 DQERALARFR------EPIEGIHFVDYMVESIVSLTHEAFGQRALVVEIMAEGMRNPQVA 119
Query 118 EILKGPLKKLFKRKAKVIQTWQEQGKISADID 149
+LK + + A+ ++ Q++G+IS DI+
Sbjct 120 AMLKNKHMTITEFVAQRMRDAQQKGEISPDIN 151
>Q9RAJ1 HTH-type transcriptional repressor DhaR [Mycobacterium
sp. (strain GP1)]
Length=198
Score = 50.4 bits (119), Expect = 3e-11
Identities = 43/157 (27%), Positives = 76/157 (48%), Gaps = 18/157 (11%)
Query 7 TQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQK 66
T R L+ VF G+SG+++ +I A++ K + + ++E+KEA + VLQ+
Sbjct 4 TPVRQHLVEKGTQVFLERGYSGSAVQDITAAAEVPKGSFYNHFESKEAFGGQ----VLQE 59
Query 67 WLAPLQ-----TLE-VELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQGAPHILEIL 120
+ + LQ TLE + P L +Y IE Q F++E+ + +++
Sbjct 60 FFSDLQRTISSTLEDASVPPVRRLQNYFAAIIETLDGQGCLIGNFSVEL----SPLSDVV 115
Query 121 KGPLKKLFKRKAKVIQ----TWQEQGKISADIDPELL 153
+ L ++F++ K Q QE G I D+ P+LL
Sbjct 116 RTELLRIFEQWVKPFQKCIIEGQETGSIRRDLAPDLL 152
>P39885 HTH-type transcriptional regulator TcmR [Streptomyces
glaucescens]
Length=226
Score = 47.4 bits (111), Expect = 4e-10
Identities = 20/85 (24%), Positives = 49/85 (58%), Gaps = 0/85 (0%)
Query 1 MEQKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVL 60
+ Q+K + R+QL+ AL++F G+ ++++IA+ ++H F ++ +KE + + +
Sbjct 20 LRQRKLRRTRDQLIREALELFLAQGYEHTTVEQIAEAVEVHPRTFFRHFASKEEVALTPI 79
Query 61 TTVLQKWLAPLQTLEVELEPTEALA 85
+ + + +LA L+ P +A++
Sbjct 80 SAIDEAFLAALEVRPAGENPLQAMS 104
>Q9ADP7 HTH-type transcriptional repressor SCO4008 [Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145)]
Length=192
Score = 47.0 bits (110), Expect = 4e-10
Identities = 42/158 (27%), Positives = 80/158 (51%), Gaps = 20/158 (13%)
Query 12 QLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKWLAPL 71
++ AA+ F+ +G +GA +D IA A+ +K I+ YY NK E+ +VL+K + L
Sbjct 12 RIFEAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYGNKG----ELFASVLEKKMLDL 67
Query 72 QTLEVELEPTEALAHYLIQKIEVSRTQPKASKLFALEIIQ----GAPHILEILKGPLKKL 127
+ V ++P + + ++ + ++ P+ +L E ++ PH E ++
Sbjct 68 -AISVPVDPDD-IEGWIDRLLDYHAAHPELLRLLFWEGMEYGTAELPHEAE-----RQEH 120
Query 128 FKRKAKVIQTWQEQGKISADID-PELLILNI----WAI 160
+ RK ++ QE+G I+ I P+LL L + WA+
Sbjct 121 YARKVAAVRDGQERGVITDAIPAPDLLFLLVAMANWAV 158
>P95251 Transcriptional repressor Mce3R [Mycobacterium tuberculosis
(strain ATCC 25618 / H37Rv)]
Length=406
Score = 47.0 bits (110), Expect = 8e-10
Identities = 22/79 (28%), Positives = 45/79 (57%), Gaps = 0/79 (0%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTT 62
+++ ++ Q+L+ A+ +F GF L++IA+ A + ++ +Y+NK+AL E + T
Sbjct 9 RRRPKDRKKQILDQAVGLFIERGFHSVKLEDIAEAAGVTARALYRHYDNKQALLAEAIRT 68
Query 63 VLQKWLAPLQTLEVELEPT 81
++ + + E E EPT
Sbjct 69 GQDQYQSARRLTEGETEPT 87
>P0A0N3 HTH-type transcriptional regulator QacR [Staphylococcus
aureus (strain Mu50 / ATCC 700699)]
Length=188
Score = 45.8 bits (107), Expect = 1e-09
Identities = 17/58 (29%), Positives = 37/58 (64%), Gaps = 0/58 (0%)
Query 10 RNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKW 67
++++L A ++F G++ + EI +L++ K N++Y+++ KE L++E+L KW
Sbjct 4 KDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKW 61
>P0A0N5 HTH-type transcriptional regulator QacR [Staphylococcus
haemolyticus]
Length=188
Score = 45.8 bits (107), Expect = 1e-09
Identities = 17/58 (29%), Positives = 37/58 (64%), Gaps = 0/58 (0%)
Query 10 RNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKW 67
++++L A ++F G++ + EI +L++ K N++Y+++ KE L++E+L KW
Sbjct 4 KDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKW 61
>P0A0N4 HTH-type transcriptional regulator QacR [Staphylococcus
aureus]
Length=188
Score = 45.8 bits (107), Expect = 1e-09
Identities = 17/58 (29%), Positives = 37/58 (64%), Gaps = 0/58 (0%)
Query 10 RNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLTTVLQKW 67
++++L A ++F G++ + EI +L++ K N++Y+++ KE L++E+L KW
Sbjct 4 KDKILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKW 61
>P96701 Uncharacterized HTH-type transcriptional regulator YdgC
[Bacillus subtilis (strain 168)]
Length=195
Score = 45.8 bits (107), Expect = 1e-09
Identities = 20/59 (34%), Positives = 36/59 (61%), Gaps = 0/59 (0%)
Query 3 QKKSTQKRNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALYVEVLT 61
+ K + R +LL AA + FS GF A + EI + A + + + Y+++KEA++ E++T
Sbjct 2 KSKGVESRKRLLKAAANEFSVRGFHDAKVSEIVKKAGFTQPSFYLYFQSKEAIFAELIT 60
>Q5HKQ1 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis (strain ATCC 35984
/ RP62A)]
Length=185
Score = 45.4 bits (106), Expect = 1e-09
Identities = 15/47 (32%), Positives = 36/47 (77%), Gaps = 0/47 (0%)
Query 10 RNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALY 56
++++++ A+ +FS G+ G +LD+I++ + K++++Y+Y+NKE +Y
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIY 48
>Q8GLC6 Biofilm operon icaADBC HTH-type negative transcriptional
regulator IcaR [Staphylococcus epidermidis]
Length=185
Score = 45.4 bits (106), Expect = 1e-09
Identities = 15/47 (32%), Positives = 36/47 (77%), Gaps = 0/47 (0%)
Query 10 RNQLLNAALDVFSTYGFSGASLDEIAQLAQMHKSNIFYYYENKEALY 56
++++++ A+ +FS G+ G +LD+I++ + K++++Y+Y+NKE +Y
Sbjct 2 KDKIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIY 48
Lambda K H a alpha
0.321 0.134 0.379 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 555390
Database: ba944c56da596be6313a7f3c079aa931.SwissProt.fasta
Posted date: May 30, 2024 8:16 AM
Number of letters in database: 4,186
Number of sequences in database: 20
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
