BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 368785a29115f3624e4cb936c54c1509.SwissProt.fasta
18 sequences; 4,662 total letters
Query= ACIAD0035
Length=267
Score E
Sequences producing significant alignments: (Bits) Value
P75851 Putative aliphatic sulfonates transport permease protein S... 335 3e-120
P40401 Putative aliphatic sulfonates transport permease protein S... 245 1e-84
Q47539 Taurine transport system permease protein TauC [Escherichi... 166 7e-54
Q8YDR8 Probable ABC transporter permease protein BMEII0107 [Bruce... 153 5e-49
Q2YJB4 Probable ABC transporter permease protein BAB2_1148 [Bruce... 153 6e-49
Q576D9 Probable ABC transporter permease protein BruAb2_1124 [Bru... 153 6e-49
Q57856 Putative ABC transporter permease protein MJ0413 [Methanoc... 152 3e-48
Q8FUN2 Probable ABC transporter permease protein BRA1188/BS1330_I... 150 6e-48
A9WGD1 Riboflavin transport system permease protein RibX [Chlorof... 144 4e-45
Q57306 Probable ABC transporter permease protein HI_0355 [Haemoph... 124 7e-38
O34649 Uncharacterized ABC transporter permease protein YtlD [Bac... 112 3e-33
Q9K9G6 Formylaminopyrimidine transport permease protein ThiX [Hal... 111 6e-33
Q55106 Bicarbonate transport system permease protein CmpB [Synech... 106 1e-30
Q51881 Nitrate import permease protein NrtB [Phormidium laminosum] 105 2e-30
P38044 Nitrate import permease protein NrtB [Synechococcus elonga... 104 6e-30
Q55461 Bicarbonate transport system permease protein CmpB [Synech... 99.0 6e-28
Q9KHT8 Carnitine transport permease protein OpuCB [Listeria monoc... 86.7 7e-24
G2JZ43 Carnitine transport permease protein OpuCB [Listeria monoc... 86.7 7e-24
>P75851 Putative aliphatic sulfonates transport permease protein
SsuC [Escherichia coli (strain K12)]
Length=263
Score = 335 bits (859), Expect = 3e-120
Identities = 160/246 (65%), Positives = 203/246 (83%), Gaps = 0/246 (0%)
Query 19 RLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAGRAL 78
R+ PW +PV ++A+WQLAS+ G L +RILP+P VV+AFW L SGELW H+ +S+ RAL
Sbjct 11 RVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRAL 70
Query 79 LGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLFL 138
+G +GG LGL+LGL++G SR LLDT++QM+RN+P LALIPLVILWFGIDESAK+FL
Sbjct 71 IGFSIGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFL 130
Query 139 VAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSLG 198
VA+G FP+YINT+HGIR++D L+EM +SYGL+ L+ +ILPGA+PSI+VG+RF+LG
Sbjct 131 VALGTLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALG 190
Query 199 LVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALERYLL 258
L+W+ LIVAETISA +GIGY+ MNAREFLQTDVV+V I+LYALLGKLADV AQ LER L
Sbjct 191 LMWLTLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWL 250
Query 259 RWHAGY 264
RW+ Y
Sbjct 251 RWNPAY 256
>P40401 Putative aliphatic sulfonates transport permease protein
SsuC [Bacillus subtilis (strain 168)]
Length=276
Score = 245 bits (625), Expect = 1e-84
Identities = 117/264 (44%), Positives = 178/264 (67%), Gaps = 4/264 (2%)
Query 6 KLNVSRGTQALGQRLLPWV----VPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLL 61
K N + G++ W+ +P ++IAIWQ+ G++ + +LP P +V F L+
Sbjct 12 KTNAEAVRKKPGRKRYGWMKGLLLPAVIIAIWQVIGGLGVVSATVLPTPVTIVLTFKELI 71
Query 62 VSGELWHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALI 121
+SGEL+ H+++S RA LG LLG GLGL++G+L G S+ LD +LQM+R +P LA+
Sbjct 72 LSGELFGHLQISIYRAALGFLLGAGLGLMIGILAGFSKRTELYLDPSLQMLRTVPHLAVT 131
Query 122 PLVILWFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEII 181
PL ILWFG DE +K+ L+A+G FFP+YINT++GIR VD +L E+ + Q ++I
Sbjct 132 PLFILWFGFDEVSKILLIALGAFFPVYINTFNGIRGVDAKLFEVARVLEFKWHQQISKVI 191
Query 182 LPGAMPSILVGLRFSLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYAL 241
LP A+P+IL+G+R SLG+ W+ L+VAE + + +G+GYM M+AR+F QT+ V GI+++A+
Sbjct 192 LPAALPNILLGIRLSLGIAWLGLVVAELMGSSSGVGYMIMDARQFSQTNKVFAGIIIFAV 251
Query 242 LGKLADVLAQALERYLLRWHAGYQ 265
+GKL D + LER LL+W Y+
Sbjct 252 VGKLTDSFVRLLERKLLKWRNSYE 275
>Q47539 Taurine transport system permease protein TauC [Escherichia
coli (strain K12)]
Length=275
Score = 166 bits (421), Expect = 7e-54
Identities = 86/243 (35%), Positives = 137/243 (56%), Gaps = 5/243 (2%)
Query 28 ILIAIWQLASTTGLLQSRILPAPSAVVSAFWHL-----LVSGELWHHVKVSAGRALLGLL 82
+L+ +W +T L+ LP P V+ + + LW H+ S R +L L
Sbjct 33 VLLTVWWTVATLQLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALF 92
Query 83 LGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLFLVAVG 142
G+ +G+ G S +LD +++ R +P LA +PL+++WFGI E++K+ L+ +
Sbjct 93 AAVLFGIPVGIAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLA 152
Query 143 VFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSLGLVWV 202
+F P+ ++ G++SV I +S G +R Q+ +ILPGA+P IL GLR LG+ W
Sbjct 153 IFAPVAMSALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWS 212
Query 203 LLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALERYLLRWHA 262
L+ AE I+A G+G+M +A EFL TDVVL GI + A++ L ++ +AL+R L WH
Sbjct 213 TLVAAELIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHG 272
Query 263 GYQ 265
Q
Sbjct 273 EVQ 275
>Q8YDR8 Probable ABC transporter permease protein BMEII0107 [Brucella
melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC
10094)]
Length=246
Score = 153 bits (386), Expect = 5e-49
Identities = 89/245 (36%), Positives = 134/245 (55%), Gaps = 6/245 (2%)
Query 16 LGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAG 75
LG LL + V I W L + TG + +LP P V+ LL++G+L + S
Sbjct 8 LGLNLLSFAVG---IGGWYLLTATGAV---VLPGPVDVLERAVTLLLNGQLVGDIFASLR 61
Query 76 RALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAK 135
R L G +LG L + +G L G RIA +L++ +Q R IP LA+IPL I+ GIDES K
Sbjct 62 RVLSGFVLGVALAIPVGFLMGWYRIARSLIEPWVQFFRMIPPLAVIPLAIVTLGIDESPK 121
Query 136 LFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRF 195
+F++ + F + TY G+ SVD LI + G ++ +I+P ++P ILVG+R
Sbjct 122 IFVIFLASFLSSVVATYQGVISVDRTLINAARVLGAKDATIFARVIVPASVPFILVGVRI 181
Query 196 SLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALER 255
LG W ++ AE I+AQ+G+GY A+ + + V ++ +LG D L QA +R
Sbjct 182 GLGSAWATVVAAELIAAQSGLGYRMQQAQLYYDLPTIFVSLVTIGILGLFMDRLLQAADR 241
Query 256 YLLRW 260
L +W
Sbjct 242 RLTQW 246
>Q2YJB4 Probable ABC transporter permease protein BAB2_1148 [Brucella
abortus (strain 2308)]
Length=250
Score = 153 bits (386), Expect = 6e-49
Identities = 89/245 (36%), Positives = 134/245 (55%), Gaps = 6/245 (2%)
Query 16 LGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAG 75
LG LL + V I W L + TG + +LP P V+ LL++G+L + S
Sbjct 8 LGLNLLSFAVG---IGGWYLLTATGAV---VLPGPVDVLERAVTLLLNGQLVGDIFASLR 61
Query 76 RALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAK 135
R L G +LG L + +G L G RIA +L++ +Q R IP LA+IPL I+ GIDES K
Sbjct 62 RVLSGFVLGVALAIPVGFLMGWYRIARSLIEPWVQFFRMIPPLAVIPLAIVTLGIDESPK 121
Query 136 LFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRF 195
+F++ + F + TY G+ SVD LI + G ++ +I+P ++P ILVG+R
Sbjct 122 IFVIFLASFLSSVVATYQGVISVDRTLINAARVLGAKDATIFARVIVPASVPFILVGVRI 181
Query 196 SLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALER 255
LG W ++ AE I+AQ+G+GY A+ + + V ++ +LG D L QA +R
Sbjct 182 GLGSAWATVVAAELIAAQSGLGYRMQQAQLYYDLPTIFVSLVTIGILGLFMDRLLQAADR 241
Query 256 YLLRW 260
L +W
Sbjct 242 RLTQW 246
>Q576D9 Probable ABC transporter permease protein BruAb2_1124
[Brucella abortus biovar 1 (strain 9-941)]
Length=250
Score = 153 bits (386), Expect = 6e-49
Identities = 89/245 (36%), Positives = 134/245 (55%), Gaps = 6/245 (2%)
Query 16 LGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAG 75
LG LL + V I W L + TG + +LP P V+ LL++G+L + S
Sbjct 8 LGLNLLSFAVG---IGGWYLLTATGAV---VLPGPVDVLERAVTLLLNGQLVGDIFASLR 61
Query 76 RALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAK 135
R L G +LG L + +G L G RIA +L++ +Q R IP LA+IPL I+ GIDES K
Sbjct 62 RVLSGFVLGVALAIPVGFLMGWYRIARSLIEPWVQFFRMIPPLAVIPLAIVTLGIDESPK 121
Query 136 LFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRF 195
+F++ + F + TY G+ SVD LI + G ++ +I+P ++P ILVG+R
Sbjct 122 IFVIFLASFLSSVVATYQGVISVDRTLINAARVLGAKDATIFARVIVPASVPFILVGVRI 181
Query 196 SLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALER 255
LG W ++ AE I+AQ+G+GY A+ + + V ++ +LG D L QA +R
Sbjct 182 GLGSAWATVVAAELIAAQSGLGYRMQQAQLYYDLPTIFVSLVTIGILGLFMDRLLQAADR 241
Query 256 YLLRW 260
L +W
Sbjct 242 RLTQW 246
>Q57856 Putative ABC transporter permease protein MJ0413 [Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1
/ JCM 10045 / NBRC 100440)]
Length=267
Score = 152 bits (383), Expect = 3e-48
Identities = 85/265 (32%), Positives = 147/265 (55%), Gaps = 9/265 (3%)
Query 1 MNYSKKLNVSRGTQALGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWH- 59
MN+ K ++V T+ L +L +P + + IW+L + + ILP AV++ H
Sbjct 2 MNHKKGISVKINTKEL---VLKISLPALAVVIWELLAIY-INNPVILPRVEAVINVLIHP 57
Query 60 ---LLVSGELWHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIP 116
+L +G L + +S R + G LL + + LG+L G R ++L DT ++++R IP
Sbjct 58 FQGILGTGSLIDNTIISIKRVISGFLLASAVAIPLGILMGYYRTVNSLCDTLIELLRPIP 117
Query 117 ALALIPLVILWFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQL 176
LA +PL + WFG+ E + +F++ +G FFP+ INT G++ V LIE + G +
Sbjct 118 PLAWVPLSLAWFGLGEMSMIFIIFIGAFFPILINTISGVKGVPTPLIEAALTLGAKGRDI 177
Query 177 YKEIILPGAMPSILVGLRFSLGLVWVLLIVAETI-SAQAGIGYMTMNAREFLQTDVVLVG 235
++++P + PSIL GLR G+ W+ ++ AE + S+ AG+GY+ M A + DVV+
Sbjct 178 LIKVVIPASSPSILTGLRVGAGIAWMCVVAAEMLPSSNAGLGYLIMYAYSLSRMDVVIAC 237
Query 236 ILLYALLGKLADVLAQALERYLLRW 260
+++ L+G + D + +E W
Sbjct 238 MIIIGLIGLVLDRGLRYIEDKYFVW 262
>Q8FUN2 Probable ABC transporter permease protein BRA1188/BS1330_II1179
[Brucella suis biovar 1 (strain 1330)]
Length=250
Score = 150 bits (379), Expect = 6e-48
Identities = 88/245 (36%), Positives = 133/245 (54%), Gaps = 6/245 (2%)
Query 16 LGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAG 75
LG LL + V I W L + TG + +LP P V+ LL++G+L + S
Sbjct 8 LGLNLLSFAVG---IGGWYLLTATGAV---VLPGPVDVLERAVTLLLNGQLVGDIFASLR 61
Query 76 RALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAK 135
R L G +LG L + +G L G RIA + ++ +Q R IP LA+IPL I+ GIDES K
Sbjct 62 RVLSGFVLGVALAIPVGFLMGWYRIARSPIEPWVQFFRMIPPLAVIPLAIVTLGIDESPK 121
Query 136 LFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRF 195
+F++ + F + TY G+ SVD LI + G ++ +I+P ++P ILVG+R
Sbjct 122 IFVIFLASFLSSVVATYQGVISVDRTLINAARVLGAKDATIFARVIVPASVPFILVGVRI 181
Query 196 SLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALER 255
LG W ++ AE I+AQ+G+GY A+ + + V ++ +LG D L QA +R
Sbjct 182 GLGSAWATVVAAELIAAQSGLGYRMQQAQLYYDLPTIFVSLVTIGILGLFMDRLLQAADR 241
Query 256 YLLRW 260
L +W
Sbjct 242 RLTQW 246
>A9WGD1 Riboflavin transport system permease protein RibX [Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)]
Length=268
Score = 144 bits (362), Expect = 4e-45
Identities = 84/239 (35%), Positives = 121/239 (51%), Gaps = 0/239 (0%)
Query 24 VVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAGRALLGLLL 83
V ++L+ WQ T + ILP+P+ V FW L SG LW H + AL G L
Sbjct 29 VTLMLLLVFWQAGVTLSGYPAFILPSPALVAGRFWQALSSGLLWQHTLATLSAALGGFTL 88
Query 84 GGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLFLVAVGV 143
+ L+LG R L L + IP +A+ PL+ILWFG ++K+ + A+
Sbjct 89 ALIIALILGYTLAHIRWLEQALAPVLAASQAIPVVAVAPLIILWFGAGLTSKVLVAALIT 148
Query 144 FFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSLGLVWVL 203
F P+ INT IRS+ +LIEM G RWQL + + P A+P + G+R L L
Sbjct 149 FLPILINTVVAIRSIPRELIEMAYISGANRWQLLRYVEAPLALPVLFGGVRTGLALATTG 208
Query 204 LIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALERYLLRWHA 262
+V E ++ + G+G + AR T ++ V + AL+ VLA LER L+RW A
Sbjct 209 AVVGEFVAGRVGLGALINIARGLFDTPLIFVALATLALITLTLYVLAGLLERLLVRWEA 267
>Q57306 Probable ABC transporter permease protein HI_0355 [Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 /
Rd)]
Length=245
Score = 124 bits (311), Expect = 7e-38
Identities = 67/220 (30%), Positives = 122/220 (55%), Gaps = 4/220 (2%)
Query 20 LLPWVVPVILIAIWQLASTTGLLQSRILPAPSAV-VSAFWHLLVSGELWHHVKVSAGRAL 78
L P ++ +L+ IWQ+ +T G I P+P AV F H + LW H +V+
Sbjct 6 LKPLLIVGVLLMIWQMVATLGSFPHYIFPSPQAVRQQLFTHAEL---LWQHTQVTLLEIC 62
Query 79 LGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLFL 138
LGLLLG GL+ LL SR S +L L + + IP A+ PL++LWFG ++K+ +
Sbjct 63 LGLLLGFLFGLISALLLSFSRQISAVLLPILVISQAIPVFAIAPLLVLWFGYGMASKIVM 122
Query 139 VAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSLG 198
+ ++FP+ Y G+R+ +++ K++ ++ +L ++ LP A+P+ GLR ++
Sbjct 123 SVLIIYFPVTAACYDGLRNTPQAWLDLAKTFNISPLRLLLKVRLPAALPAFASGLRIAVS 182
Query 199 LVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILL 238
+ + +V E + + G+GY+ ++A +Q D++ +L+
Sbjct 183 VAPIGAVVGEWVGSSEGLGYLMIHANARMQVDLMFAALLI 222
>O34649 Uncharacterized ABC transporter permease protein YtlD
[Bacillus subtilis (strain 168)]
Length=270
Score = 112 bits (281), Expect = 3e-33
Identities = 68/240 (28%), Positives = 126/240 (53%), Gaps = 9/240 (4%)
Query 27 VILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAGRALLGLLLGGG 86
++ + W+++S G + I +PSAV L G L H+ V+ +LG LLG
Sbjct 35 ILFFSGWEISSRQGWIDPLIFSSPSAVWRLLLEKLGDGSLLSHIGVTLFETVLGFLLGTF 94
Query 87 LGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLFLVAVGVFFP 146
+G L L S + +LD L ++ +P +AL P++I+ G + + ++A+G
Sbjct 95 MGTCLAALLWWSNRLARILDPYLVILNAMPKVALGPILIVALG---PSFISIIAMGAIIS 151
Query 147 MYINT---YHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSLGLVWVL 203
+ I T Y + VD ++ K++G +W ++KE+ILP + P+I+ L+ ++GL WV
Sbjct 152 VIITTIVVYTAFQEVDENYTKVMKTFGAKKWVIFKEVILPASSPAIISTLKVNVGLSWVG 211
Query 204 LIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALERYLLRWHAG 263
+IV E + ++ G+GYM + + +V + +L+ A+ A ++ Q +E +W G
Sbjct 212 VIVGEFLVSKVGLGYMIIYGFQVFNFTLVFLSLLIIAI---FATLMYQGVELLEKKWTKG 268
>Q9K9G6 Formylaminopyrimidine transport permease protein ThiX
[Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197
/ FERM 7344 / JCM 9153 / C-125)]
Length=250
Score = 111 bits (278), Expect = 6e-33
Identities = 73/243 (30%), Positives = 121/243 (50%), Gaps = 2/243 (1%)
Query 18 QRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVSGELWHHVKVSAGRA 77
Q L P + ++L+ IW++++ + Q +LP+P +V L S + H+ +
Sbjct 6 QALEPTLFFLMLMVIWEISARM-IGQPYLLPSPIQIVMRTIDLSES-LFFTHLPATLAII 63
Query 78 LLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLF 137
+GL L LG+LL LL + + L + IP +AL P+ +LWFG +K+
Sbjct 64 SIGLALSIVLGILLSLLMFWNERVERAVYPLLVASQTIPVIALAPIFVLWFGYSIWSKVA 123
Query 138 LVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSL 197
+ + FFP+ +NTY G++S + Q E+ + G T+ QL+ + +P +PS L GLR ++
Sbjct 124 VTVLLTFFPITVNTYDGLKSTNRQYEELFYTMGATKRQLFYRLFVPSTLPSFLTGLRIAV 183
Query 198 GLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVLAQALERYL 257
L + V E + A G+GY + V I + +LLG L + LE L
Sbjct 184 PLAVIGAAVGEWLGANEGLGYFSRRMMTQFDGPGVFAPIFILSLLGILGFAAIKKLENIL 243
Query 258 LRW 260
L W
Sbjct 244 LPW 246
>Q55106 Bicarbonate transport system permease protein CmpB [Synechococcus
elongatus (strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=278
Score = 106 bits (264), Expect = 1e-30
Identities = 70/271 (26%), Positives = 134/271 (49%), Gaps = 17/271 (6%)
Query 2 NYSKKLNVSRGTQALGQRLLPWVVPVILIAIWQLASTTGLLQSRILPAPSAVVSA----- 56
N S+ + + Q L LLP + + IWQ+ S++G + LP P ++ +
Sbjct 10 NGSRPSGLKKWRQKLDGILLPLAGILGFLIIWQIFSSSGATR---LPGPLSLFTEERTRE 66
Query 57 --FWHLLVSGEL-----WHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTL 109
+ L G L W + S R G + +G+ +G+L G +R + +LD
Sbjct 67 LLLYPFLDRGGLDKGLFWQTI-ASLTRVAQGFSIAAIIGISVGILVGLNRQLNAMLDPLF 125
Query 110 QMIRNIPALALIPLVILWFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSY 169
Q +R I LA +P+ ++ F ++ A +F++ + +P+ INT G+R + + +
Sbjct 126 QFLRMIAPLAWVPIALVAFQQNQPAAIFVIFITAVWPILINTAEGVRQIPQDYNNVARVL 185
Query 170 GLTRWQLYKEIILPGAMPSILVGLRFSLGLVWVLLIVAETI-SAQAGIGYMTMNAREFLQ 228
+++ + +++LP A+P I GLR ++GL W+ +I AE + S GIG+ +A +
Sbjct 186 RMSKSKYLMKVVLPAALPYIFTGLRIAIGLSWLAIIAAEIVMSGIVGIGFFIWDAYQQNY 245
Query 229 TDVVLVGILLYALLGKLADVLAQALERYLLR 259
+++ ++ +G L D L+R++LR
Sbjct 246 VSDIILAVIYIGAVGLLLDRFVAWLQRWILR 276
>Q51881 Nitrate import permease protein NrtB [Phormidium laminosum]
Length=279
Score = 105 bits (263), Expect = 2e-30
Identities = 62/232 (27%), Positives = 113/232 (49%), Gaps = 15/232 (6%)
Query 28 ILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLVS----------GELWHHVKVSAGRA 77
+L+ IWQL + R P VV W L++ G W + S R
Sbjct 39 VLLGIWQLLCSGENAACR----PIQVVQESWDLIIDPFYRGSGTDQGLFWQ-IAASLQRV 93
Query 78 LLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFGIDESAKLF 137
+G L+ G+ LG+L G S + LD Q++R +P LA +P+ + F + A +F
Sbjct 94 AVGYLMAAIAGIALGILIGVSVLMFQALDPIFQVLRTVPPLAWLPISLAAFRDSQPAAIF 153
Query 138 LVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSILVGLRFSL 197
++ + +P+ INT G++++ + + L+R + +++LP +P I GL+ ++
Sbjct 154 VIFITAIWPIIINTAVGVQNIPQDYNNVARVLKLSRLDYFLKVLLPATVPYIFTGLKIAI 213
Query 198 GLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADVL 249
GL W+ ++ AE ++ GIG+ +A V++ I+ L+G L + L
Sbjct 214 GLSWLAIVAAEMLTGGVGIGFFIWDAYNSGSNSEVILAIIYVGLVGLLLNAL 265
Score = 18.5 bits (36), Expect = 2.5
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query 2 NYSKKLNVSRGTQALGQRLLPWVVPVILIAIWQLA---STTGLLQSRILPAPSAVVSAFW 58
N ++ L +SR L + LLP VP I + ++A S ++ + +L + W
Sbjct 180 NVARVLKLSRLDYFL-KVLLPATVPYIFTGL-KIAIGLSWLAIVAAEMLTGGVGIGFFIW 237
Query 59 HLLVSGELWHHVKVSAGRALLGLLLGGGLGLL 90
SG + L+GLLL +G +
Sbjct 238 DAYNSGSNSEVILAIIYVGLVGLLLNALVGFI 269
>P38044 Nitrate import permease protein NrtB [Synechococcus elongatus
(strain ATCC 33912 / PCC 7942 / FACHB-805)]
Length=279
Score = 104 bits (259), Expect = 6e-30
Identities = 69/243 (28%), Positives = 118/243 (49%), Gaps = 16/243 (7%)
Query 21 LPWVVPV-ILIAIWQLASTTGLLQSRILPAPSAVVSAFWHLLV----------SGELWHH 69
LP+VV + I +AIWQ+ S +L LP P VV+ W + S L
Sbjct 26 LPYVVCLPIFLAIWQVISA--ILGQDRLPGPINVVANTWMPYIVEPFFDNGGTSKGLGLQ 83
Query 70 VKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVILWFG 129
+ +S R +G LL G+L+G + G S+ LD +Q++R +P LA P+ ++ F
Sbjct 84 ILISLQRVAIGYLLAACTGILVGGVLGMSKFLGKGLDPVIQVLRTVPPLAWFPISLMVFQ 143
Query 130 IDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAMPSI 189
++ +F++ + +P+ INT GI + + + L++ I++P +P +
Sbjct 144 DANTSAIFVIFITAIWPIIINTAVGINQIPDDYNNVARVLKLSKKDYILNILIPSTVPYV 203
Query 190 LVGLRFSLGLVWVLLIVAETISAQAGIGYM---TMNAREFLQTDVVLVGILLYALLGKLA 246
GLR ++GL W+ ++ AE + A GIGY NA + +++ I L+G
Sbjct 204 FAGLRIAVGLAWLAIVAAEMLKADGGIGYFIWDAYNAGGDGSSSQIILAIFYVGLVGLSL 263
Query 247 DVL 249
D L
Sbjct 264 DRL 266
>Q55461 Bicarbonate transport system permease protein CmpB [Synechocystis
sp. (strain PCC 6803 / Kazusa)]
Length=280
Score = 99.0 bits (245), Expect = 6e-28
Identities = 64/242 (26%), Positives = 121/242 (50%), Gaps = 18/242 (7%)
Query 20 LLPWVVPVI-LIAIWQLASTTGLLQSRILPAPSAV----------VSAFWHL--LVSGEL 66
+LP + ++ + +WQL S+ GL++ LP PS++ + F+ L G
Sbjct 29 ILPPIFGILGFLLLWQLISSAGLIK---LPPPSSLWTDPRTRTLLMYPFYDQGGLDKGLF 85
Query 67 WHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLVIL 126
W + S GR G L +G+ G+L G+ + LD Q +R + LA +P+ ++
Sbjct 86 WQTL-ASLGRVAQGYSLAAIVGISTGILVGTQPLLDKALDPIFQFLRMVAPLAWVPIALV 144
Query 127 WFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPGAM 186
++ A +F++ + +P+ INT G++ + I + K L+ + + +I++P A+
Sbjct 145 ALQQNQPAAIFVIFITSVWPILINTTEGVKQIPQDYINVRKVLRLSPQKFFFKILIPSAL 204
Query 187 PSILVGLRFSLGLVWVLLIVAETI-SAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKL 245
P I GLR ++GL W+ +I AE + S GIG+ +A + +++ + +G L
Sbjct 205 PYIFTGLRIAIGLAWLAIIAAEIVMSGIVGIGFFIWDAYQQNYISEIILAVFYIGAVGLL 264
Query 246 AD 247
D
Sbjct 265 LD 266
>Q9KHT8 Carnitine transport permease protein OpuCB [Listeria monocytogenes]
Length=218
Score = 86.7 bits (213), Expect = 7e-24
Identities = 49/190 (26%), Positives = 95/190 (50%), Gaps = 5/190 (3%)
Query 65 ELWHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLV 124
+ W H+ +S +LG+ + G+LL S ++A+ ++ + +++ +P+LA++ +
Sbjct 18 QTWQHLFISLSAVILGIAVAVPTGILL---TRSPKVANFVIGV-VSVLQTVPSLAILAFI 73
Query 125 ILWFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPG 184
I + G+ + + + P+ NT+ G+R VD LIE G+ G+T WQL + +P
Sbjct 74 IPFLGVGTLPAIIALFIYALLPILRNTFIGVRGVDKNLIESGRGMGMTNWQLIVNVEIPN 133
Query 185 AMPSILVGLRFSLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGK 244
++ I+ G+R S V +A I A G+G N + D++L G + +L
Sbjct 134 SISVIMAGIRLSAVYVIAWATLASYIGA-GGLGDFIFNGLNLYRPDLILGGAIPVTILAL 192
Query 245 LADVLAQALE 254
+ + LE
Sbjct 193 VVEFALGKLE 202
>G2JZ43 Carnitine transport permease protein OpuCB [Listeria monocytogenes
serotype 1/2a (strain 10403S)]
Length=218
Score = 86.7 bits (213), Expect = 7e-24
Identities = 49/190 (26%), Positives = 95/190 (50%), Gaps = 5/190 (3%)
Query 65 ELWHHVKVSAGRALLGLLLGGGLGLLLGLLNGSSRIASTLLDTTLQMIRNIPALALIPLV 124
+ W H+ +S +LG+ + G+LL S ++A+ ++ + +++ +P+LA++ +
Sbjct 18 QTWQHLFISLSAVILGIAVAVPTGILL---TRSPKVANFVIGV-VSVLQTVPSLAILAFI 73
Query 125 ILWFGIDESAKLFLVAVGVFFPMYINTYHGIRSVDPQLIEMGKSYGLTRWQLYKEIILPG 184
I + G+ + + + P+ NT+ G+R VD LIE G+ G+T WQL + +P
Sbjct 74 IPFLGVGTLPAIIALFIYALLPILRNTFIGVRGVDKNLIESGRGMGMTNWQLIVNVEIPN 133
Query 185 AMPSILVGLRFSLGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGK 244
++ I+ G+R S V +A I A G+G N + D++L G + +L
Sbjct 134 SISVIMAGIRLSAVYVIAWATLASYIGA-GGLGDFIFNGLNLYRPDLILGGAIPVTILAL 192
Query 245 LADVLAQALE 254
+ + LE
Sbjct 193 VVEFALGKLE 202
Lambda K H a alpha
0.328 0.143 0.438 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 863010
Database: 368785a29115f3624e4cb936c54c1509.SwissProt.fasta
Posted date: May 9, 2024 6:11 PM
Number of letters in database: 4,662
Number of sequences in database: 18
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
