BLASTP 2.12.0+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: 1d998ac26cbfc12ac3cfdf746903800c.SwissProt.fasta
           2 sequences; 2,700 total letters



Query= ACIAD0059

Length=69
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

A3LNK7 Plasma membrane fusion protein PRM1 [Scheffersomyces stipi...  31.2    6e-06
O75923 Dysferlin [Homo sapiens]                                       30.8    8e-06


>A3LNK7 Plasma membrane fusion protein PRM1 [Scheffersomyces stipitis 
(strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)]
Length=620

 Score = 31.2 bits (69),  Expect = 6e-06
 Identities = 17/38 (45%), Positives = 22/38 (58%), Gaps = 1/38 (3%)

Query  18   VTYHLKNMKSIQLSNIDKYHLKQRNKI-ETLFSLLKGT  54
            +T  L NM S+ LS ID Y  KQ + I + LF  +K T
Sbjct  390  MTKELSNMTSVYLSQIDSYFQKQEDNINDKLFGSVKST  427


 Score = 16.9 bits (32),  Expect = 0.73
 Identities = 17/51 (33%), Positives = 26/51 (51%), Gaps = 4/51 (8%)

Query  7    KSRLKLQ---SIDLVTYHLKNMKSIQLSNIDKYHLKQRNKIETLFSLLKGT  54
            KS L L+   SI LV   +  +    +  + K HLK+R ++ +L S L  T
Sbjct  528  KSNLFLEFVISISLVGVWVMQLLIGVIIAVTKSHLKRR-RLGSLTSSLDKT  577


>O75923 Dysferlin [Homo sapiens]
Length=2080

 Score = 30.8 bits (68),  Expect = 8e-06
 Identities = 13/33 (39%), Positives = 23/33 (70%), Gaps = 0/33 (0%)

Query  1     MAQEELKSRLKLQSIDLVTYHLKNMKSIQLSNI  33
             M  + +K  L+  +I+++ + L+NMKS QL+NI
Sbjct  1320  MVPQNIKPALQRTAIEILAWGLRNMKSYQLANI  1352



Lambda      K        H        a         alpha
   0.327    0.139    0.368    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 105680


  Database: 1d998ac26cbfc12ac3cfdf746903800c.SwissProt.fasta
    Posted date:  May 9, 2024  5:49 PM
  Number of letters in database: 2,700
  Number of sequences in database:  2



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40