BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 7227665ae6ae3fc44606b75adfa40ee2.SwissProt.fasta
13 sequences; 4,104 total letters
Query= ACIAD0105
Length=300
Score E
Sequences producing significant alignments: (Bits) Value
P10183 HTH-type transcriptional activator NahR [Pseudomonas putida] 172 1e-55
Q9EXL7 HTH-type transcriptional activator NagR [Ralstonia sp] 168 6e-54
P52679 PCP degradation transcriptional activation protein [Sphing... 142 6e-44
P55619 HTH-type transcriptional regulator SyrM 1 [Sinorhizobium f... 129 1e-38
Q9ZN79 HTH-type transcriptional regulator LinR [Sphingobium indic... 125 1e-37
P55733 HTH-type transcriptional regulator SyrM 2 [Sinorhizobium f... 119 6e-35
P18561 HTH-type transcriptional regulator SyrM [Rhizobium melilot... 109 3e-31
P55700 Nodulation protein D 2 [Sinorhizobium fredii (strain NBRC ... 105 1e-29
Q08812 HTH-type transcriptional regulator SyrM [Rhizobium etli] 105 1e-29
P12233 Nodulation protein D 2 [Bradyrhizobium japonicum] 103 3e-29
P10151 HTH-type transcriptional regulator LeuO [Escherichia coli ... 102 7e-29
P46924 Probable HTH-type transcriptional regulator LeuO [Salmonel... 101 2e-28
P23720 Nodulation protein D 3 [Rhizobium leguminosarum bv. phaseoli] 100 4e-28
>P10183 HTH-type transcriptional activator NahR [Pseudomonas putida]
Length=300
Score = 172 bits (437), Expect = 1e-55
Identities = 91/295 (31%), Positives = 156/295 (53%), Gaps = 3/295 (1%)
Query 3 DLDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTE 62
DLD LL +F + + VS A+ +G++QP +SN L ++R DPLF+R M PT
Sbjct 5 DLDLNLLVVFNQLLVDRRVSITAENLGLTQPAVSNALKRLRTSLQDPLFVRTHQGMEPTP 64
Query 63 LSKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
+ + ++ ++ + + +FDP S+ +TLAMTD+ + +P++ L AP
Sbjct 65 YAAHLAEPVTSAMHALRNALQHHESFDPLTSERTFTLAMTDIGEIYFMPRLMDVLAHQAP 124
Query 123 -FIRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKE 181
+ VR S + NG +DLA+G LP L+ GF+Q++L YV + RK+HP +
Sbjct 125 NCVISTVRDSSMSLMQALQNGTVDLAVGLLPNLQTGFFQRRLLQNHYVCLCRKDHP-VTR 183
Query 182 ERISVDDYIREMHID-IDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
E ++++ + H+ I AG GH ++ + G++R++ + +P + VG ++Q TD +A
Sbjct 184 EPLTLERFCSYGHVRVIAAGTGHGEVDTYMTRVGIRRDIRLEVPHFAAVGHILQRTDLLA 243
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEIF 295
TVP L+ + L P+ P +I WH H ++ W RQ ++F
Sbjct 244 TVPIRLADCCVEPFGLSALPHPVVLPEIAINMFWHAKYHKDLANIWLRQLMFDLF 298
>Q9EXL7 HTH-type transcriptional activator NagR [Ralstonia sp]
Length=301
Score = 168 bits (426), Expect = 6e-54
Identities = 92/295 (31%), Positives = 155/295 (53%), Gaps = 3/295 (1%)
Query 3 DLDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTE 62
D+D LL +F + +SVS A + +G++QP +SN L ++R D LFLR M PT
Sbjct 5 DIDLNLLVVFNQLLLDRSVSTAGEKLGLTQPAVSNSLKRLRAALKDDLFLRTSKGMEPTP 64
Query 63 LSKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
+ + + +N +++ +FDP S + LAMTD+ + +P + + L + AP
Sbjct 65 YALHLAEPVIYALNTLQTALTTRDSFDPFASTRTFNLAMTDIGEMYFMPPLMEALAQRAP 124
Query 123 FIRLN-VRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKE 181
I+++ +RP + M +G +DLA+G LP+L+ GF+Q++LF RYV + RK+HP K
Sbjct 125 HIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGFFQRRLFRHRYVCMFRKDHPSAKS 184
Query 182 ERISVDDYIREMHIDIDA-GAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
+S+ + H+ + A GH ++ L+ G+KR + + +P ++ +G ++ TD IA
Sbjct 185 P-MSLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHSTDLIA 243
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEIF 295
TVP + L P P +I WH + + W RQ E+F
Sbjct 244 TVPQRFAVRCEVPFGLTTSPHPAKLPDIAINLFWHAKYNRDPGNMWLRQLFVELF 298
>P52679 PCP degradation transcriptional activation protein [Sphingobium
chlorophenolicum]
Length=307
Score = 142 bits (359), Expect = 6e-44
Identities = 89/294 (30%), Positives = 149/294 (51%), Gaps = 13/294 (4%)
Query 9 LNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTELSKQIF 68
L +F +Y+ S AA A+ + QPT+S L ++R HF DPLF+R + M PT L+ +
Sbjct 11 LMVFDALYRHGSAGKAAHALSMPQPTLSRWLAQLRTHFDDPLFVRTRSGMEPTPLAARAA 70
Query 69 PLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPFIR--- 125
P I+E+I + FDP S+ + +A +D ++LP++ L + AP +R
Sbjct 71 PHIAEMIAIYRQHVRSELRFDPGTSNRNFRIAASDFGQALMLPRLYATLEETAPQVRVTG 130
Query 126 LNVR--PISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEER 183
+N+R P+ E + +G ID+A G P L G Q LF + YV + R++HP L
Sbjct 131 VNLRHGPLVEE----LESGSIDIAFGGFPTLSAGIKTQTLFREEYVCVMRQSHPAL-THG 185
Query 184 ISVDDYIREMHIDIDA---GAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
+ ++ + + HI + A H +E L ++ ++L ++ +ETD I
Sbjct 186 LDLEAFRQCRHIIVTAHEFNHVHEQVEARLLELLPPESIRFTTENFLVSAVIAEETDVIL 245
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEI 294
T+P L++ RG L IF P++ P+ +KQ+WH + W R+ +I
Sbjct 246 TIPSRLARWFANRGGLTIFPVPIELPSIEVKQYWHERYDKDPGNIWLRRVIAKI 299
Score = 17.3 bits (33), Expect = 5.9
Identities = 6/16 (38%), Positives = 11/16 (69%), Gaps = 0/16 (0%)
Query 246 LSQVLLARGNLQIFDA 261
++ +L G+L +FDA
Sbjct 1 MNDSVLPLGHLMVFDA 16
>P55619 HTH-type transcriptional regulator SyrM 1 [Sinorhizobium
fredii (strain NBRC 101917 / NGR234)]
Length=338
Score = 129 bits (324), Expect = 1e-38
Identities = 80/288 (28%), Positives = 145/288 (50%), Gaps = 7/288 (2%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
LD L + + ++V+ AA +G+SQP++S LI++R F D L +R + M+PT
Sbjct 35 LDLNTLLALEALLEHRNVTQAARHLGLSQPSVSRALIRLRGVFNDDLLVRGSSGMVPTPH 94
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
++++ ++ V++ + + D + L +AM D +VLLP + + AP
Sbjct 95 AQRLGQMLPPVLDSIRGM--VDPGLDQGEWRLTARMAMPDHQAIVLLPPFLPLMRERAP- 151
Query 124 IRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEER 183
L++ S ++ GEIDLA+G + + G+++++L++ R+ + R HP L++E
Sbjct 152 -NLDIVTDSLLALRRLEQGEIDLAVGQIGEAPPGYFRRRLYNDRFACLLRNGHPALEQES 210
Query 184 ISVDDY--IREMHIDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIAT 241
I +D + +R I D G + ++L L+ + + + L GL + TD +
Sbjct 211 I-IDTFSALRHAAIASDTKDGFGRVHDDLVKLDLQDPDPVLVSNVLTAGLAIVSTDLVLV 269
Query 242 VPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQ 289
VP ++ A L I D P++ P Y + WH CH H+W RQ
Sbjct 270 VPRRVATRNAALLPLVIVDPPVELPPYEVALIWHERCHRDPDHRWLRQ 317
>Q9ZN79 HTH-type transcriptional regulator LinR [Sphingobium indicum
(strain DSM 16413 / CCM 7287 / MTCC 6362 / UT26 / NBRC
101211 / UT26S)]
Length=303
Score = 125 bits (315), Expect = 1e-37
Identities = 82/296 (28%), Positives = 138/296 (47%), Gaps = 6/296 (2%)
Query 3 DLDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTE 62
DLD R L + + K SVSAAA + + QPT S+GL ++R+ GDPL +R + M PT
Sbjct 5 DLDFRHLVLLDALLKRHSVSAAARELDLPQPTASHGLARLRKALGDPLLVRARDGMEPTP 64
Query 63 LSKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
++ I ++ +++ + F P + + +A +D++HLV+L + AP
Sbjct 65 RAEAIAGVVQQLLELRRDLAEGGQTFSPDRLKREFIIAGSDIAHLVVLTALHSAARFEAP 124
Query 123 FIRLNVRPIS-SETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKE 181
+S E + G +D+A+G P L G Q+L+ + Y+ ++ HP +K
Sbjct 125 HTSYRALTLSGDEMVSALETGHVDIAVGAYPSLVAGIKTQRLYQEEYLCFGKEGHPFIKS 184
Query 182 ERISVDDYIREMHIDIDA-GAGHYH--IENELQNKGLKRNVLIRLPSYLGVGLVVQETDA 238
DD++ HI + G H H +E L +K + I S+L E+D
Sbjct 185 G--ETDDFMAADHIVVSTKGMAHAHRAVERALLDKIHPDRIRIVASSFLVALAACFESDL 242
Query 239 IATVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEI 294
I T P + L L+ P+ + ++Q+WH H+W RQ H++
Sbjct 243 ILTAPARVIGRLAEVYGLRAVRPPILMEAFEVRQYWHARNQDDPPHRWLRQLLHKV 298
>P55733 HTH-type transcriptional regulator SyrM 2 [Sinorhizobium
fredii (strain NBRC 101917 / NGR234)]
Length=339
Score = 119 bits (299), Expect = 6e-35
Identities = 74/287 (26%), Positives = 139/287 (48%), Gaps = 5/287 (2%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
+D LL + + ++++ AA +G SQP +S L ++R F D L +R + ++PT
Sbjct 32 VDLNLLVELEALLQYRNITHAAQHVGRSQPAMSRALSRLRDMFNDDLLVRGSSGLVPTPQ 91
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
++ + ++ V+N + + + S +S + T+AM D LVLLP + L + P
Sbjct 92 AEHLAQMLPSVLNAIRELVSCSSGLRDLRSKV--TMAMPDHQSLVLLPYLLPRLGERVPH 149
Query 124 IRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEE- 182
+ + P+ ++ GEID AIG + G+ ++ L++ R+ + R +HP L++E
Sbjct 150 VDIVTEPLLDGALRRLEQGEIDFAIGQIGAAPPGYLRRGLYADRFTCLLRHDHPALEQEW 209
Query 183 RISVDDYIREMHIDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIATV 242
+ +R I D+ G + + L GL +++ + L +VV TD + +
Sbjct 210 SVGTFAALRHASIASDSNEGLGQVYDGLVRFGLPGPIVV--SNVLTAAVVVAMTDLVLMI 267
Query 243 PYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQ 289
P ++ + L I D P++ Y + WH CHH H+ R+
Sbjct 268 PNRVATRVATMLPLAIVDPPVELKPYEVALIWHQRCHHDLEHRVLRR 314
>P18561 HTH-type transcriptional regulator SyrM [Rhizobium meliloti
(strain 1021)]
Length=326
Score = 109 bits (273), Expect = 3e-31
Identities = 69/286 (24%), Positives = 137/286 (48%), Gaps = 3/286 (1%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
+D LL + + + ++ AA +G SQP +S L ++R D L + ++ T L
Sbjct 32 IDLNLLVDLEALLQYRHITQAAQHVGRSQPAMSRALSRLRGMLKDDLLVAGSRGLVLTPL 91
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
++ + ++ V++ + + N S+ P++ T+AM D +VLLP + L++ AP
Sbjct 92 AECLTQMLPSVLDAIRQMMNLSLA--PAQRRWKVTMAMPDHQAVVLLPHLLPRLHERAPH 149
Query 124 IRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEE- 182
+ + P+ + GEID+ +G + G+ +++L++ + + R NHP L +E
Sbjct 150 LDIVTDPLLGGALGLLEQGEIDVVVGQMGAAPLGYLRRRLYADSFTCVLRHNHPALAQEW 209
Query 183 RISVDDYIREMHIDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIATV 242
I +R + I + I + L GL+R + + + L +++ TD++ V
Sbjct 210 TIEAFAALRHVAIASEPDELFGQIYDRLTKLGLQRGDPMVVSTVLTAAVLIAATDSVLVV 269
Query 243 PYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFR 288
P ++ + A +L + P++ Y + WH CH H+W R
Sbjct 270 PSRVATRVAAMLSLAVIPPPVELRPYEVALIWHERCHRDPEHRWLR 315
>P55700 Nodulation protein D 2 [Sinorhizobium fredii (strain NBRC
101917 / NGR234)]
Length=312
Score = 105 bits (261), Expect = 1e-29
Identities = 80/291 (27%), Positives = 144/291 (49%), Gaps = 9/291 (3%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
LD LL + +SV+AAA +I +SQP +S + ++R +FGD LF G E+IPT
Sbjct 6 LDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIPTPR 65
Query 64 SKQIFPLISEVINKVE-SINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
+ + P + + + ++ SI ++ + F+P +S+ + + ++DV LV ++ + L + AP
Sbjct 66 AIALAPAVRDALLHIQFSIISWDM-FNPVQSERRFRIRLSDVMMLVFFERVVKRLAREAP 124
Query 123 FIRLNVRPISSETSYQMANGEIDLAIGFLPQL--EDGFYQQKLFSQRYVVISRKNHPRLK 180
I + P++ + + G++D I LP+L + KL V + + +LK
Sbjct 125 GIGFELLPLTEDPDELLRYGDVDFVI--LPELFASSDHPKAKLLDDTLVCVGCPTNKQLK 182
Query 181 EERISVDDYIREMHIDIDAGAG-HYHIEN-ELQNKGLKRNVLIRLPSYLGVGLVVQETDA 238
+ +S ++Y HI G IEN L GLKR + + +P + + ++ TD
Sbjct 183 RQ-LSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTDR 241
Query 239 IATVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQ 289
IAT+P L + L++ + PL P ++ W + + W RQ
Sbjct 242 IATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQ 292
>Q08812 HTH-type transcriptional regulator SyrM [Rhizobium etli]
Length=336
Score = 105 bits (261), Expect = 1e-29
Identities = 76/289 (26%), Positives = 135/289 (47%), Gaps = 7/289 (2%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
+D LL + + ++V+ A IG SQP +S L ++R F D L +R +IPT
Sbjct 41 IDLNLLVALEALLEYRNVTHAGQHIGRSQPAMSRALGRLRGLFNDDLLVRSSTGLIPTPQ 100
Query 64 SKQIFPLISEVINKV-ESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
+ + + + + E + + SV TLA+ D L +LP++ +L + AP
Sbjct 101 GEHLAQRLPSALRTIREMVTSRSVISKEWGRGA--TLAIPDHQALAVLPRLLPWLRERAP 158
Query 123 FIRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEE 182
+ + G+IDLA+G + G++++ L++ R+ + R HP L +E
Sbjct 159 HLDTLACLPFDRAVRGLEQGDIDLAVGHIDVQLPGYFRRSLYTDRFACLLRHGHPALAQE 218
Query 183 RISVDDY--IREMHIDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
++D++ +R I D+ I + L N R+ ++ S L +V TD +
Sbjct 219 W-TIDNFATLRHAAISTDSPDHFGPIYDHLPNLRADRSPIL-FSSVLTAAVVASATDLVL 276
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQ 289
VP ++ + A L++ D PL+ Y + WH CHH H+W R+
Sbjct 277 LVPRRVATQVSAMLPLRVVDPPLEPAPYKVMLIWHERCHHDPQHKWLRK 325
>P12233 Nodulation protein D 2 [Bradyrhizobium japonicum]
Length=312
Score = 103 bits (258), Expect = 3e-29
Identities = 80/291 (27%), Positives = 143/291 (49%), Gaps = 9/291 (3%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
LD LL + +SV+AAA +I +SQP +S + ++R +FGD LF G E+IPT
Sbjct 6 LDLNLLVALDALMTKRSVTAAARSINLSQPAMSAAIARLRTYFGDDLFTMRGRELIPTPR 65
Query 64 SKQIFPLISEVINKVE-SINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAP 122
+ + P + + + ++ SI ++ + F+P +S + + ++DV LV ++ + L + AP
Sbjct 66 AIALAPAVRDALLHIQFSIISWDM-FNPVQSQRRFRIRLSDVIMLVFFERVVKRLAREAP 124
Query 123 FIRLNVRPISSETSYQMANGEIDLAIGFLPQL--EDGFYQQKLFSQRYVVISRKNHPRLK 180
I + P++ + + G++D I LP+L + KL V + + +LK
Sbjct 125 GIGFELLPLTEDPDELLRYGDVDFVI--LPELFASSDHPKAKLLDDTLVCVGCPTNKQLK 182
Query 181 EERISVDDYIREMHIDIDAGAG-HYHIEN-ELQNKGLKRNVLIRLPSYLGVGLVVQETDA 238
+ +S ++Y HI G IEN L GLKR + + +P + + ++ TD
Sbjct 183 RQ-LSFENYGSMGHIAAKFGRTLKPSIENWLLLEHGLKRRIEVVVPGFSLIPPLLSGTDR 241
Query 239 IATVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQ 289
IAT+P L + L++ + PL P ++ W + + W RQ
Sbjct 242 IATMPLRLVEHFAKTTPLRVAELPLALPPFAQAVQWPSLHNRDQASIWMRQ 292
>P10151 HTH-type transcriptional regulator LeuO [Escherichia coli
(strain K12)]
Length=314
Score = 102 bits (255), Expect = 7e-29
Identities = 73/296 (25%), Positives = 137/296 (46%), Gaps = 7/296 (2%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
+D LL +F V + ++++ AA +G+SQP +SN + +++ F D LF+R G + PT
Sbjct 22 VDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR 81
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
+ Q+F + + + V++ S F+P+ S+ ++ L + +L QI + + AP
Sbjct 82 AFQLFGSVRQALQLVQNELPGS-GFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPN 140
Query 124 IRLNVR-PISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEE 182
I + + ++ T +Q+ E + I + F LF V+++ KNHP +K
Sbjct 141 IHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGP 200
Query 183 RISVDDYIREMH--IDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
+ D Y E H + +D A + +K + ++ + + + V VV +T +A
Sbjct 201 LLKHDVY-NEQHAAVSLDRFASFSQPWYDTVDK--QASIAYQGMAMMSVLSVVSQTHLVA 257
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEIFK 296
P +L++ LQ+ PL + + WH HQW + I K
Sbjct 258 IAPRWLAEEFAESLELQVLPLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICK 313
>P46924 Probable HTH-type transcriptional regulator LeuO [Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)]
Length=314
Score = 101 bits (252), Expect = 2e-28
Identities = 73/296 (25%), Positives = 136/296 (46%), Gaps = 7/296 (2%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
+D LL +F V + ++++ AA +G+SQP +SN + +++ F D LF+R G + PT
Sbjct 22 VDLNLLTVFDAVMQEQNITRAAHTLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR 81
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
+ Q+F + + + V++ S F+P+ S+ ++ L + +L QI + K AP
Sbjct 82 AFQLFGSVRQALQLVQNELPGS-GFEPTSSERVFNLCVCSPLDNILTSQIYNRVEKIAPN 140
Query 124 IRLNVR-PISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEE 182
I + + ++ T +Q+ E + I + F LF V+++ + HPR+
Sbjct 141 IHVVFKASLNQNTEHQLRYQETEFVISYEEFRRPEFTSVPLFKDEMVLVASRKHPRISGP 200
Query 183 RISVDDYIREMH--IDIDAGAGHYHIENELQNKGLKRNVLIRLPSYLGVGLVVQETDAIA 240
+ D Y E H + +D A + +K + +V + + + V VV +T +A
Sbjct 201 LLEGDVY-NEQHAVVSLDRYASFSQPWYDTPDK--QSSVAYQGMALISVLNVVSQTHLVA 257
Query 241 TVPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFRQACHEIFK 296
P +L++ +LQI PL + + WH HQW + K
Sbjct 258 IAPRWLAEEFAESLDLQILPLPLKLNSRTCYLSWHEAAGRDKGHQWMEDLLVSVCK 313
>P23720 Nodulation protein D 3 [Rhizobium leguminosarum bv. phaseoli]
Length=302
Score = 100 bits (249), Expect = 4e-28
Identities = 73/287 (25%), Positives = 133/287 (46%), Gaps = 3/287 (1%)
Query 4 LDSRLLNIFYHVYKSKSVSAAADAIGVSQPTISNGLIKIRQHFGDPLFLRVGNEMIPTEL 63
LD LL + ++++AAA +I +SQP +S + ++R +F D LF G E +PT
Sbjct 6 LDLNLLVALDALMIERNLTAAARSINLSQPAMSAAVRRLRSYFRDELFTMRGREFVPTPR 65
Query 64 SKQIFPLISEVINKVESINNFSVNFDPSKSDLLYTLAMTDVSHLVLLPQITQFLNKNAPF 123
++ + P I E + + F P +SD + +++ D +VL +I + L + AP
Sbjct 66 AEDLAPAIREALQHIRLNIIPWDKFTPDQSDRHFRVSLCDFVTVVLFQKILERLAREAPG 125
Query 124 IRLNVRPISSETSYQMANGEIDLAIGFLPQLEDGFYQQKLFSQRYVVISRKNHPRLKEER 183
I ++ P++ + G++D I + + LF +R + N+ +L EE
Sbjct 126 ISFDLLPLTDNPDELLRRGDVDFLISPPLFMSSAHPKIDLFQERLTCVGCSNNKQL-EEA 184
Query 184 ISVDDYIREMHIDIDAGAGHYHIENE--LQNKGLKRNVLIRLPSYLGVGLVVQETDAIAT 241
++ ++Y H + G + LQ GLKR V + + S+ + + TD IAT
Sbjct 185 LTAEEYSSMGHAVVRFGRTQQPTIEDCFLQEHGLKRRVEVVVSSFSMIPAALMGTDRIAT 244
Query 242 VPYYLSQVLLARGNLQIFDAPLDFPTYSIKQHWHMCCHHKTSHQWFR 288
VP L + L++ P+ PT++ W + ++ W R
Sbjct 245 VPLRLVGLFEDTIPLRMTAPPIALPTFTEAVQWPVLHDKDPANIWMR 291
Lambda K H a alpha
0.325 0.140 0.417 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 904192
Database: 7227665ae6ae3fc44606b75adfa40ee2.SwissProt.fasta
Posted date: May 19, 2024 7:04 PM
Number of letters in database: 4,104
Number of sequences in database: 13
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
