BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: aad687c98f8d02fda25b4058a182f73b.SwissProt.fasta
23 sequences; 5,833 total letters
Query= ACIAD0107
Length=251
Score E
Sequences producing significant alignments: (Bits) Value
P0ACL8 Putative L-lactate dehydrogenase operon regulatory protein... 231 2e-79
P0ACL7 Putative L-lactate dehydrogenase operon regulatory protein... 231 2e-79
P0CL10 Pyruvate dehydrogenase complex repressor [Salmonella typhi... 150 6e-48
E1W823 Pyruvate dehydrogenase complex repressor [Salmonella typhi... 150 6e-48
P0A2S3 Pyruvate dehydrogenase complex repressor [Salmonella typhi] 150 6e-48
P0ACM0 Pyruvate dehydrogenase complex repressor [Escherichia coli... 150 8e-48
P0ACM1 Pyruvate dehydrogenase complex repressor [Escherichia coli... 150 8e-48
P0ACL9 Pyruvate dehydrogenase complex repressor [Escherichia coli... 150 8e-48
P0ACL6 Glc operon transcriptional activator [Escherichia coli O6:... 106 6e-31
P0ACL5 Glc operon transcriptional activator [Escherichia coli (st... 106 6e-31
O07007 HTH-type transcriptional regulator LutR [Bacillus subtilis... 96.3 2e-27
P39161 Uxu operon transcriptional regulator [Escherichia coli (st... 91.3 3e-25
P42239 Uncharacterized HTH-type transcriptional regulator YcbG [B... 85.5 2e-23
P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC ... 83.6 2e-22
P0ACL4 Exu regulon transcriptional regulator [Shigella flexneri] 78.2 2e-20
P0ACL2 Exu regulon transcriptional regulator [Escherichia coli (s... 78.2 2e-20
P0ACL3 Exu regulon transcriptional regulator [Escherichia coli O1... 78.2 2e-20
D2TP58 HTH-type transcriptional repressor NanR [Citrobacter roden... 76.6 7e-20
Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi] 72.0 3e-18
P0A8W0 HTH-type transcriptional repressor NanR [Escherichia coli ... 71.2 6e-18
Q9LBW6 Putative HTH-type transcriptional regulator RmpR [Mycobact... 55.1 3e-12
P13669 Mannosyl-D-glycerate transport/metabolism system repressor... 52.8 1e-11
P9WMG5 HTH-type transcriptional regulator Mce2R [Mycobacterium tu... 51.6 4e-11
>P0ACL8 Putative L-lactate dehydrogenase operon regulatory protein
[Shigella flexneri]
Length=258
Score = 231 bits (589), Expect = 2e-79
Identities = 120/243 (49%), Positives = 166/243 (68%), Gaps = 4/243 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+SD+V +++ LI++++L+ G +LPAERQLA LG+SR SLREA+ +L S G+L SRRG
Sbjct 7 RLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRG 66
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT+I+ +TWS+Q IV+P+ L+ +DP+Y FD+ EAR +E TAW+AA+R+T D+
Sbjct 67 GGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDILEARYAIEASTAWHAAMRATPGDKE 126
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
KI CF+ L D A+ AD FHLAIAEASHN+VL+Q MR FD+LQ +V R
Sbjct 127 KIQLCFEA----TLSEDPDIASQADVRFHLAIAEASHNIVLLQTMRGFFDVLQSSVKHSR 182
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+++Y P QL+EQH V+DAI DA AR A+ H+ FV ++ DED+AR R
Sbjct 183 QRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARI 242
Query 242 TRL 244
TRL
Sbjct 243 TRL 245
>P0ACL7 Putative L-lactate dehydrogenase operon regulatory protein
[Escherichia coli (strain K12)]
Length=258
Score = 231 bits (589), Expect = 2e-79
Identities = 120/243 (49%), Positives = 166/243 (68%), Gaps = 4/243 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+SD+V +++ LI++++L+ G +LPAERQLA LG+SR SLREA+ +L S G+L SRRG
Sbjct 7 RLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRG 66
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT+I+ +TWS+Q IV+P+ L+ +DP+Y FD+ EAR +E TAW+AA+R+T D+
Sbjct 67 GGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDILEARYAIEASTAWHAAMRATPGDKE 126
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
KI CF+ L D A+ AD FHLAIAEASHN+VL+Q MR FD+LQ +V R
Sbjct 127 KIQLCFEA----TLSEDPDIASQADVRFHLAIAEASHNIVLLQTMRGFFDVLQSSVKHSR 182
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+++Y P QL+EQH V+DAI DA AR A+ H+ FV ++ DED+AR R
Sbjct 183 QRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAMMAHLSFVHTTMKRFDEDQARHARI 242
Query 242 TRL 244
TRL
Sbjct 243 TRL 245
>P0CL10 Pyruvate dehydrogenase complex repressor [Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720)]
Length=254
Score = 150 bits (379), Expect = 6e-48
Identities = 88/248 (35%), Positives = 145/248 (58%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE +FD+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQFDLLETRHALEGIAAYYAALRSTDEDKD 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQESGDLDAESEAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y +S ++ +AI + AR+A H+ F+ + + +E+R++RA
Sbjct 186 ELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHLAFIEEIMLDRSREESRRERA 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>E1W823 Pyruvate dehydrogenase complex repressor [Salmonella typhimurium
(strain SL1344)]
Length=254
Score = 150 bits (379), Expect = 6e-48
Identities = 88/248 (35%), Positives = 145/248 (58%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE +FD+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQFDLLETRHALEGIAAYYAALRSTDEDKD 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQESGDLDAESEAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y +S ++ +AI + AR+A H+ F+ + + +E+R++RA
Sbjct 186 ELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHLAFIEEIMLDRSREESRRERA 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>P0A2S3 Pyruvate dehydrogenase complex repressor [Salmonella typhi]
Length=254
Score = 150 bits (379), Expect = 6e-48
Identities = 88/248 (35%), Positives = 145/248 (58%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE +FD+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQFDLLETRHALEGIAAYYAALRSTDEDKD 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQESGDLDAESEAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y +S ++ +AI + AR+A H+ F+ + + +E+R++RA
Sbjct 186 ELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHLAFIEEIMLDRSREESRRERA 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>P0ACM0 Pyruvate dehydrogenase complex repressor [Escherichia
coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=254
Score = 150 bits (378), Expect = 8e-48
Identities = 86/248 (35%), Positives = 146/248 (59%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE ++D+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKE 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y+ +S ++ +AI + AR+A H+ F+ + + +E+R++R+
Sbjct 186 ELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERS 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>P0ACM1 Pyruvate dehydrogenase complex repressor [Escherichia
coli O157:H7]
Length=254
Score = 150 bits (378), Expect = 8e-48
Identities = 86/248 (35%), Positives = 146/248 (59%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE ++D+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKE 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y+ +S ++ +AI + AR+A H+ F+ + + +E+R++R+
Sbjct 186 ELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERS 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>P0ACL9 Pyruvate dehydrogenase complex repressor [Escherichia
coli (strain K12)]
Length=254
Score = 150 bits (378), Expect = 8e-48
Identities = 86/248 (35%), Positives = 146/248 (59%), Gaps = 6/248 (2%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++SD + Q+L+ LI + L+ G++LP ER+LA +SRPSLREAIQ+L + G+L R+G
Sbjct 10 KLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRRQG 69
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++Q W Q +P+ L+ + PE ++D+ E R LEG A+YAALRST+ D+
Sbjct 70 GGTFVQS--SLW--QSFSDPLVELLSDHPESQYDLLETRHALEGIAAYYAALRSTDEDKE 125
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+I + I Q GD A + A + +A+ EA+HN+VL+ ++R + +L NV
Sbjct 126 RIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEAAHNVVLLHLLRCMEPMLAQNVRQNF 185
Query 182 KKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEARQKRA 241
+ +Y+ +S ++ +AI + AR+A H+ F+ + + +E+R++R+
Sbjct 186 ELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHLAFIEEILLDRSREESRRERS 245
Query 242 TRLHRIDQ 249
L R++Q
Sbjct 246 --LRRLEQ 251
>P0ACL6 Glc operon transcriptional activator [Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC)]
Length=254
Score = 106 bits (264), Expect = 6e-31
Identities = 67/233 (29%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query 3 VSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGD 62
+ + V + ++ LI LK G LP+ER+L LG SR +LRE + L GI+ + +G
Sbjct 8 ICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGR 67
Query 63 GTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRAK 122
+ + +L P+ +L P +D+ + R +LEG +A AA T+AD
Sbjct 68 DSRVARLNRVQD----TSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLGTQADFVV 123
Query 123 IHQCFDEIAYHQLQGDSAAA---AVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVL 179
I +C++++ + A D FHLAI +ASHN VL+ ++SL DL+ +V
Sbjct 124 ITRCYEKMLAASENNKEISLIEHAQLDHAFHLAICQASHNQVLVFTLQSLTDLMFNSVFA 183
Query 180 GRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLD 232
+Y+ P Q+ QH ++ +A+ ++ A+ A H+ V ++ ++
Sbjct 184 SVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHVRTVKKNLHDIE 236
>P0ACL5 Glc operon transcriptional activator [Escherichia coli
(strain K12)]
Length=254
Score = 106 bits (264), Expect = 6e-31
Identities = 67/233 (29%), Positives = 117/233 (50%), Gaps = 7/233 (3%)
Query 3 VSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGD 62
+ + V + ++ LI LK G LP+ER+L LG SR +LRE + L GI+ + +G
Sbjct 8 ICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIETAQGR 67
Query 63 GTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRAK 122
+ + +L P+ +L P +D+ + R +LEG +A AA T+AD
Sbjct 68 DSRVARLNRVQD----TSPLIHLFSTQPRTLYDLLDVRALLEGESARLAATLGTQADFVV 123
Query 123 IHQCFDEIAYHQLQGDSAAA---AVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVL 179
I +C++++ + A D FHLAI +ASHN VL+ ++SL DL+ +V
Sbjct 124 ITRCYEKMLAASENNKEISLIEHAQLDHAFHLAICQASHNQVLVFTLQSLTDLMFNSVFA 183
Query 180 GRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLD 232
+Y+ P Q+ QH ++ +A+ ++ A+ A H+ V ++ ++
Sbjct 184 SVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQRAARDHVRTVKKNLHDIE 236
>O07007 HTH-type transcriptional regulator LutR [Bacillus subtilis
(strain 168)]
Length=219
Score = 96.3 bits (238), Expect = 2e-27
Identities = 66/225 (29%), Positives = 117/225 (52%), Gaps = 7/225 (3%)
Query 14 LIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGDGTYIQQLPETW 73
+I+ LK GD+L + + LA S +SR ++REA+ L ++G++ ++G+GTY+++ +
Sbjct 1 MIKNGELKPGDKLDSVQALAESFQVSRSAVREALSALKAMGLVEMKQGEGTYLKE----F 56
Query 74 SQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRAKIHQCFDEIAYH 133
I +P+S + E + E R +LE G A AA + TEAD +I E+
Sbjct 57 ELNQISQPLSAALLMKKEDVKQLLEVRKLLEIGVASLAAEKRTEADLERIQDALKEMG-- 114
Query 134 QLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGRK-KVYNHPVSAD 192
++ D AD FHLA+A+AS N +L +M + LL + RK +++ S
Sbjct 115 SIEADGELGEKADFAFHLALADASQNELLKHLMNHVSSLLLETMRETRKIWLFSKKTSVQ 174
Query 193 QLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEAR 237
+L E+H ++ +A+ + A A+ H+ V D + E+ +
Sbjct 175 RLYEEHERIYNAVAAGNGAQAEAAMLAHLTNVEDVLSGYFEENVQ 219
>P39161 Uxu operon transcriptional regulator [Escherichia coli
(strain K12)]
Length=257
Score = 91.3 bits (225), Expect = 3e-25
Identities = 69/228 (30%), Positives = 116/228 (51%), Gaps = 14/228 (6%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R +V ++ LI + G+RLP ER++A L ++R +REA+ L G++ RRG
Sbjct 9 RPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEVRRG 68
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
G Y+ L + SQ P +N+ + F++ +AR +LE A +AAL++T D
Sbjct 69 AGIYV--LDNSGSQN-TDSPDANVCNDAGP--FELLQARQLLESNIAEFAALQATREDIV 123
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
K+ Q ++ D FHLAIAEA+HN +L+++ R + + N +
Sbjct 124 KMRQALQLEERELASSAPGSSESGDMQFHLAIAEATHNSMLVELFRQSWQWRENNPMW-- 181
Query 182 KKVYNHPVSADQLSEQ-----HFQVMDAIDRQDAQAARDAVCGHIEFV 224
+ H D L + H Q++ A+ ++DA+AA+ A+ H+E V
Sbjct 182 --IQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKLAMWQHLENV 227
>P42239 Uncharacterized HTH-type transcriptional regulator YcbG
[Bacillus subtilis (strain 168)]
Length=233
Score = 85.5 bits (210), Expect = 2e-23
Identities = 64/232 (28%), Positives = 117/232 (50%), Gaps = 18/232 (8%)
Query 3 VSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGD 62
++ QV++++ L+ L+ GD+LP E +L L +SRP LREA+ L +LG++ +
Sbjct 18 LAKQVIERIVHLLSSGQLRAGDKLPTEMELMDILHVSRPVLREALSSLETLGVITRKTRG 77
Query 63 GTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRAK 122
GTY ++ ++ ++P S ++ + + EAR+ LE G AA + E + +
Sbjct 78 GTY-------FNDKIGMQPFSVMLALATDNLPAIIEARMALELGLVTIAAEKINEEELQR 130
Query 123 IHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGRK 182
+ + D+IA AD FH IA +++N V+ M++S LL + + +
Sbjct 131 LQKTIDDIA----NSTDNHYGEADKEFHRIIALSANNPVVEGMIQS---LLITHAKIDSQ 183
Query 183 KVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHV-RSLDE 233
Y D E H ++ DA+ ++D A + H++FV D + + +DE
Sbjct 184 IPYR---ERDVTVEYHKKIYDALAKRDPYKAHYHMYEHLKFVRDKILKGMDE 232
>P44487 Uxu operon regulator [Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd)]
Length=266
Score = 83.6 bits (205), Expect = 2e-22
Identities = 65/226 (29%), Positives = 118/226 (52%), Gaps = 15/226 (7%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R ++ Q L+ I Q GD+LP ER+++ G+SR +REA+ L ++ ++G
Sbjct 24 RTYTRIGQLLKQDISQGIYSIGDKLPTEREISEKFGVSRTIVREAMVMLEVEKLVEVKKG 83
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
G Y+ + PE+ I S+L + P F++ +AR +LE A +AAL++T+ D
Sbjct 84 SGVYVVRTPES-----IHMEHSDLPDVGP---FELLQARQLLESSIAEFAALQATKKDIL 135
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
+ Q + +L + AD +FHLA+AE + N VL+++ L+ ++N +
Sbjct 136 NLKQILNR--EKELLTQNQDDYSADKDFHLALAEITQNDVLVKLQEQLWQ-YRFNSAMW- 191
Query 182 KKVYNHPVSADQ---LSEQHFQVMDAIDRQDAQAARDAVCGHIEFV 224
++++ + D E H ++ AI +++A AR A+ H+E V
Sbjct 192 AQLHSRILQNDYHHLWIEDHQTILSAIQKKNANEARKAMWQHLENV 237
>P0ACL4 Exu regulon transcriptional regulator [Shigella flexneri]
Length=258
Score = 78.2 bits (191), Expect = 2e-20
Identities = 64/223 (29%), Positives = 107/223 (48%), Gaps = 13/223 (6%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+ Q+ L+ IEQ GD+LPAER +A +SR +REAI L G + R+G
Sbjct 8 RLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKG 67
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
G ++ +Q + N +E F++ +AR ++E A +AA + T+ D
Sbjct 68 SGIHVVS-----NQPRHQQAADNNMEFANYGPFELLQARQLIESNIAEFAATQVTKQDIM 122
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
K+ ++ Q DS D FH+ +A A+ N L ++ ++ +N
Sbjct 123 KLMAIQEQARGEQCFRDSE----WDLQFHIQVALATQNSALAAIVEKMWTQRSHNPYW-- 176
Query 182 KKVYNHPVS--ADQLSEQHFQVMDAIDRQDAQAARDAVCGHIE 222
KK++ H S D + H Q++ A+ R+D AA+ A+ H+E
Sbjct 177 KKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLE 219
>P0ACL2 Exu regulon transcriptional regulator [Escherichia coli
(strain K12)]
Length=258
Score = 78.2 bits (191), Expect = 2e-20
Identities = 64/223 (29%), Positives = 107/223 (48%), Gaps = 13/223 (6%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+ Q+ L+ IEQ GD+LPAER +A +SR +REAI L G + R+G
Sbjct 8 RLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKG 67
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
G ++ +Q + N +E F++ +AR ++E A +AA + T+ D
Sbjct 68 SGIHVVS-----NQPRHQQAADNNMEFANYGPFELLQARQLIESNIAEFAATQVTKQDIM 122
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
K+ ++ Q DS D FH+ +A A+ N L ++ ++ +N
Sbjct 123 KLMAIQEQARGEQCFRDSE----WDLQFHIQVALATQNSALAAIVEKMWTQRSHNPYW-- 176
Query 182 KKVYNHPVS--ADQLSEQHFQVMDAIDRQDAQAARDAVCGHIE 222
KK++ H S D + H Q++ A+ R+D AA+ A+ H+E
Sbjct 177 KKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLE 219
>P0ACL3 Exu regulon transcriptional regulator [Escherichia coli
O157:H7]
Length=258
Score = 78.2 bits (191), Expect = 2e-20
Identities = 64/223 (29%), Positives = 107/223 (48%), Gaps = 13/223 (6%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+ Q+ L+ IEQ GD+LPAER +A +SR +REAI L G + R+G
Sbjct 8 RLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNVSRTVVREAIIMLEVEGYVEVRKG 67
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
G ++ +Q + N +E F++ +AR ++E A +AA + T+ D
Sbjct 68 SGIHVVS-----NQPRHQQAADNNMEFANYGPFELLQARQLIESNIAEFAATQVTKQDIM 122
Query 122 KIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVLGR 181
K+ ++ Q DS D FH+ +A A+ N L ++ ++ +N
Sbjct 123 KLMAIQEQARGEQCFRDSE----WDLQFHIQVALATQNSALAAIVEKMWTQRSHNPYW-- 176
Query 182 KKVYNHPVS--ADQLSEQHFQVMDAIDRQDAQAARDAVCGHIE 222
KK++ H S D + H Q++ A+ R+D AA+ A+ H+E
Sbjct 177 KKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHLE 219
>D2TP58 HTH-type transcriptional repressor NanR [Citrobacter rodentium
(strain ICC168)]
Length=260
Score = 76.6 bits (187), Expect = 7e-20
Identities = 59/242 (24%), Positives = 116/242 (48%), Gaps = 13/242 (5%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++S+ V ++L+ +I ++ +G++LP+ER+L + RPS+REA+ L G++ G
Sbjct 28 KLSEMVEEELEQMIRRKEFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNG 87
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEE---DPEYRFDVQEARIVLEGGTAWYAALRSTEA 118
+ + + S I+ +S + ++ P ++ R+ E YAA +T+A
Sbjct 88 ERARVSRP----SADTIIGELSGMAKDFLAHPGGIAHFEQLRLFFESSLVRYAAENATDA 143
Query 119 DRAKIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFD-LLQYNV 177
+ + + Q D+A +D +FH +AE N + + +L D L+
Sbjct 144 QIDLLAKALE--INSQSLDDNALFIRSDVDFHRVLAEIPGNPIFKAIHVALLDWLIAARP 201
Query 178 VLGRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHVRSLDEDEAR 237
+ +++Y H + Q QH ++DAI ++D AA A+ H+ V +L + R
Sbjct 202 TVPDRELYEHNSVSYQ---QHIAIVDAIRQRDPDAADRALQTHLNSVSATWHALGQQSKR 258
Query 238 QK 239
+K
Sbjct 259 KK 260
Score = 16.9 bits (32), Expect = 8.9
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query 178 VLGRKKVYNHPVSADQLSEQHFQVMDAIDRQ 208
V+GR + N P++ +LSE + ++ + R+
Sbjct 14 VIGRS-LRNRPLARKKLSEMVEEELEQMIRR 43
>Q9X9E0 Exu regulon transcriptional regulator [Dickeya chrysanthemi]
Length=259
Score = 72.0 bits (175), Expect = 3e-18
Identities = 58/223 (26%), Positives = 106/223 (48%), Gaps = 12/223 (5%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
R+ Q+ +L+ IE GD+LPAER ++ + +SR +REAI L G + R+G
Sbjct 8 RLYQQLAAELKQRIENGVYPVGDKLPAERNISEEMNVSRTVVREAIIMLEVEGYVEVRKG 67
Query 62 DGTYIQQLPETWSQQLIVEPIS--NLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEAD 119
G ++ + L+ S + + P F++ +AR ++E A +AA + T D
Sbjct 68 SGIHV---ISNQQRHLLAANGSDADFLTAGP---FELLQARQLIESNIAEFAATQVTRQD 121
Query 120 RAKIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFDLLQYNVVL 179
++ EI + Q D + D FH+ +A A+ N + ++ ++ +N
Sbjct 122 IIQLM----EIQENARQEDRFRDSEWDLKFHVQVALATQNSAMATIVEKMWSQRIHNPYW 177
Query 180 GRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIE 222
+ + S + E H Q++ A+ R+D AA+ A+ H+E
Sbjct 178 RKLHEHIDDKSIESWCEDHDQILKALIRKDPYAAKLAMWQHLE 220
>P0A8W0 HTH-type transcriptional repressor NanR [Escherichia coli
(strain K12)]
Length=263
Score = 71.2 bits (173), Expect = 6e-18
Identities = 55/227 (24%), Positives = 108/227 (48%), Gaps = 13/227 (6%)
Query 2 RVSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG 61
++S+ V ++L+ +I +R +G++LP+ER+L + RPS+REA+ L G++ G
Sbjct 31 KLSEMVEEELEQMIRRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNG 90
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEE---DPEYRFDVQEARIVLEGGTAWYAALRSTEA 118
+ + + S I+ +S + ++ P ++ R+ E YAA +T+
Sbjct 91 ERARVSRP----SADTIIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDE 146
Query 119 DRAKIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLIQMMRSLFD-LLQYNV 177
+ + + Q ++AA +D +FH +AE N + + + +L D L+
Sbjct 147 QIDLLAKALE--INSQSLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARP 204
Query 178 VLGRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFV 224
+ + ++ H + Q QH ++DAI R D A A+ H+ V
Sbjct 205 TVTDQALHEHNNVSYQ---QHIAIVDAIRRHDPDEADRALQSHLNSV 248
>Q9LBW6 Putative HTH-type transcriptional regulator RmpR [Mycobacterium
gastri]
Length=274
Score = 55.1 bits (131), Expect = 3e-12
Identities = 57/233 (24%), Positives = 107/233 (46%), Gaps = 23/233 (10%)
Query 4 SDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRG-- 61
+D +V+++ I LK G+RLP E L+ G+ +LREA+ +L G++ +RRG
Sbjct 21 ADAIVERISKAIALGLLKVGERLPPEAALSEMFGVGGATLREALSELRERGVVETRRGRS 80
Query 62 DGTYIQQLPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTEADRA 121
GT++ P EP ++++ E + E R + + +A AA +RA
Sbjct 81 GGTFVVNQP---------EPETDIMRE-WFLSTSISEIRDIGDEHSAIAAATIRLACERA 130
Query 122 KIHQCFD---EIAYHQLQGDS-AAAAVADANFH--LAIAEASHNLVLIQMMRSLFDLLQY 175
+ H FD E+A + ++ A AD+ FH LA++ S L ++ + Q
Sbjct 131 EAHD-FDRLQELARALVLAETPETRASADSRFHIELAVSAQSPRLANAEIRLQEETVRQL 189
Query 176 NVVLGRKKVYNHPVSADQLSEQHFQVMDAIDRQDAQAARDAVCGHIEFVIDHV 228
+ Y+ ++ + +H +++ A+ + + A+ HI I H+
Sbjct 190 WAPFTVAEAYD----PERATAEHLELVRAVAQDQPERAQKLTLEHIRRNIFHL 238
Score = 16.9 bits (32), Expect = 8.9
Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 0/20 (0%)
Query 67 QQLPETWSQQLIVEPISNLI 86
+ LPE IVE IS I
Sbjct 13 RSLPEIERADAIVERISKAI 32
>P13669 Mannosyl-D-glycerate transport/metabolism system repressor
MngR [Escherichia coli (strain K12)]
Length=240
Score = 52.8 bits (125), Expect = 1e-11
Identities = 25/63 (40%), Positives = 40/63 (63%), Gaps = 0/63 (0%)
Query 6 QVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGDGTY 65
Q+ +++ I + LK GD LP E L T G+SR ++R+A++QL IL S +G GTY
Sbjct 9 QIADRIREQIARGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTY 68
Query 66 IQQ 68
+++
Sbjct 69 VKE 71
Score = 20.8 bits (42), Expect = 0.51
Identities = 11/49 (22%), Positives = 22/49 (45%), Gaps = 0/49 (0%)
Query 69 LPETWSQQLIVEPISNLIEEDPEYRFDVQEARIVLEGGTAWYAALRSTE 117
L ETW + ++ + E+ +Y F + ++V++ L TE
Sbjct 139 LEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTE 187
>P9WMG5 HTH-type transcriptional regulator Mce2R [Mycobacterium
tuberculosis (strain ATCC 25618 / H37Rv)]
Length=240
Score = 51.6 bits (122), Expect = 4e-11
Identities = 23/65 (35%), Positives = 46/65 (71%), Gaps = 0/65 (0%)
Query 3 VSDQVVQKLQGLIEQRHLKQGDRLPAERQLATSLGISRPSLREAIQQLNSLGILASRRGD 62
V ++V +++ + + G+ LP+ER+LA LG+SRP++REA+++L++ G++ R+GD
Sbjct 11 VPEEVFEQIATDVLTGEMPPGEALPSERRLAELLGVSRPAVREALKRLSAAGLVEVRQGD 70
Query 63 GTYIQ 67
T ++
Sbjct 71 VTTVR 75
Score = 16.9 bits (32), Expect = 8.7
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (2%)
Query 111 AALRSTEADRAKIHQCFDEIAYHQLQGDSAAAAVADANFHLAIAEASHNLVLI 163
AAL +T AK + ++A GD A A A L +A S VL+
Sbjct 183 AALTTTMTAAAKRPSDYRKLADAICSGDPTGAKKA-AQDLLELANTSLMAVLV 234
Lambda K H a alpha
0.322 0.135 0.383 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 988388
Database: aad687c98f8d02fda25b4058a182f73b.SwissProt.fasta
Posted date: May 9, 2024 12:19 PM
Number of letters in database: 5,833
Number of sequences in database: 23
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
