BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: deb1ada4a705f622f5e5630c66527514.SwissProt.fasta
15 sequences; 3,587 total letters
Query= ACIAD0123
Length=246
Score E
Sequences producing significant alignments: (Bits) Value
P42914 Probable fimbrial chaperone YraI [Escherichia coli (strain... 96.3 1e-27
P33128 Probable fimbrial chaperone YadV [Escherichia coli (strain... 95.5 3e-27
P33409 Chaperone protein FimB/FhaD [Bordetella pertussis (strain ... 94.7 6e-27
P43661 Chaperone protein LpfB [Salmonella typhimurium (strain LT2... 93.2 2e-26
Q8X5K6 Probable fimbrial chaperone LpfB [Escherichia coli O157:H7] 92.0 5e-26
P53519 Chaperone protein CssC [Escherichia coli] 89.7 3e-25
P35757 Chaperone protein HifB [Haemophilus influenzae] 89.7 4e-25
P53518 Chaperone protein CssC [Escherichia coli] 89.0 7e-25
P45991 Chaperone protein HifB [Haemophilus influenzae] 89.0 8e-25
P37923 Chaperone protein FimC [Salmonella typhimurium (strain LT2... 86.7 5e-24
P33387 Chaperone protein SefB [Salmonella enteritidis] 86.7 6e-24
P21646 Chaperone protein MrkB [Klebsiella pneumoniae] 80.5 9e-22
P15319 Chaperone protein PapD [Escherichia coli] 79.7 2e-21
P31697 Chaperone protein FimC [Escherichia coli (strain K12)] 79.3 3e-21
P33407 Chaperone protein MyfB [Yersinia enterocolitica] 76.3 6e-20
>P42914 Probable fimbrial chaperone YraI [Escherichia coli (strain
K12)]
Length=231
Score = 96.3 bits (238), Expect = 1e-27
Identities = 65/187 (35%), Positives = 105/187 (56%), Gaps = 14/187 (7%)
Query 4 VLFTLIICLGLWGVPAIAGILPENTRVIFDGTASSRSFIVANQNPY-PILVQTWVDHGLG 62
V+ TL+ C G GI+ + TRVI+D + + VAN+ P L+Q+WVD+ G
Sbjct 8 VILTLL-CSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDG 66
Query 63 DPDHDQAPFVINPPIFKMQPDAIQVLKIIYTGDQKQTDFESQFWLNLYEIPGKKKLQSNQ 122
+APF+I PP+F+++ L+II T D + ES F++N+ IP KKK
Sbjct 67 K---SRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKK----S 119
Query 123 KPETNHQLDLSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFI 182
++L L +T++K+FYRPA LK + + K L+ FK+ D+ + + NPT Y++
Sbjct 120 DDVNANELTLVFKTRIKMFYRPAH-LKGRVNDAWKSLE--FKRSDHSLNIY--NPTEYYV 174
Query 183 SFSKIAL 189
F+ +A+
Sbjct 175 VFAGLAV 181
>P33128 Probable fimbrial chaperone YadV [Escherichia coli (strain
K12)]
Length=246
Score = 95.5 bits (236), Expect = 3e-27
Identities = 64/201 (32%), Positives = 103/201 (51%), Gaps = 10/201 (5%)
Query 19 AIAGILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHG--LGDPDHDQAPFVINPP 76
+IA I+ TRVI+ S + + N+ P+LVQ+W+D G +P PF PP
Sbjct 23 SIADIVISGTRVIYKSDQKSVNVRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPP 82
Query 77 IFKMQPDAIQVLKIIYTGDQK-QTDFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQ 135
+ ++ Q +K++YT D ES FW N+ E+P K +K L L+ +
Sbjct 83 VSRIDAKRGQTIKLMYTASTSLPKDRESVFWFNVLEVPPK---PDAEKVANQSLLQLAFR 139
Query 136 TQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALISNKNS 195
T++K+FYRP LK N E LK+ + + + L NPTPY++SFS L ++
Sbjct 140 TRIKLFYRPDG-LKGNPSEAPLALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKR 198
Query 196 VFIEDYLDQMVAPNADQIYPI 216
I+ +M+AP +D++ +
Sbjct 199 YPID---VKMIAPFSDEVMKV 216
>P33409 Chaperone protein FimB/FhaD [Bordetella pertussis (strain
Tohama I / ATCC BAA-589 / NCTC 13251)]
Length=244
Score = 94.7 bits (234), Expect = 6e-27
Identities = 65/181 (36%), Positives = 98/181 (54%), Gaps = 17/181 (9%)
Query 19 AIAGILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHGLGD--PDHDQAPFVINPP 76
A A ++ TRVI++ + + ++N+ P L+Q W+D G + PD Q PF + PP
Sbjct 25 ARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFFLTPP 84
Query 77 IFKMQPDAIQVLKIIYTG--DQK--QTDFESQFWLNLYEIPGKKKLQSNQKPETNH-QLD 131
+ ++ P Q L+I + G D K +D ES FWLN+ E+P K PE H L
Sbjct 85 LARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPK------ATPEEGHGVLQ 138
Query 132 LSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALIS 191
L+I+++LK+FYRP K L N A L FK+ N + L NPTPY+++ K+ +
Sbjct 139 LTIRSRLKLFYRP-KGLSGNPLTAAADL--TFKRKPNGV-LEVHNPTPYYVNLQKLEVGE 194
Query 192 N 192
N
Sbjct 195 N 195
>P43661 Chaperone protein LpfB [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=232
Score = 93.2 bits (230), Expect = 2e-26
Identities = 58/166 (35%), Positives = 96/166 (58%), Gaps = 13/166 (8%)
Query 22 GILPENTRVIFDGTASSRSFIVANQNPYP-ILVQTWVDHGLGDPDHDQAPFVINPPIFKM 80
G+ +TRVI+DG+ S V N++ L+Q+W+D G+ + PF+I PP+FK+
Sbjct 25 GVALSSTRVIYDGSRKEASLTVNNKSTTDEFLIQSWIDDANGNK---KTPFIITPPLFKL 81
Query 81 QPDAIQVLKIIYTGDQKQTDFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQTQLKV 140
P VL+I+ T + D ES +W+N+ IP K ++ E + L ++++T+LK+
Sbjct 82 SPTKNNVLRIVNTTNTLPQDRESVYWINVKAIPAK-----SEDAEAKNVLQIAVRTRLKL 136
Query 141 FYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSK 186
FYRPA LK N + +L+F NQI + ENP+ + ++F+K
Sbjct 137 FYRPAG-LKGNSMDGWNKLQFTSAGA-NQIKV--ENPSAFNLTFNK 178
>Q8X5K6 Probable fimbrial chaperone LpfB [Escherichia coli O157:H7]
Length=232
Score = 92.0 bits (227), Expect = 5e-26
Identities = 59/187 (32%), Positives = 101/187 (54%), Gaps = 14/187 (7%)
Query 1 MKLVLFTLIICLGLWGVPAIAGILPENTRVIFDGTASSRSFIVANQNPYP-ILVQTWVDH 59
MK L + L L G+ +TRVI+DG+ S V N++ L+Q+WVD
Sbjct 5 MKSKFVALALSLFLSQSVLAGGVGLSSTRVIYDGSKKEASLTVQNKSKTEEFLIQSWVDD 64
Query 60 GLGDPDHDQAPFVINPPIFKMQPDAIQVLKIIYTGDQKQTDFESQFWLNLYEIPGKKKLQ 119
G + PF+I PP+FK+ P+ +L+I+ D ES +W+N+ IP K
Sbjct 65 AAGSK---KTPFIITPPLFKLDPEKNNILRIVNITPGLPQDRESVYWVNVKAIPSK---- 117
Query 120 SNQKPETNHQLDLSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTP 179
+ E + L ++++T++K+FYRPA LK +++ +L+F + NQ+ + +NPT
Sbjct 118 -SDDSENKNVLQIAVRTRIKLFYRPAG-LKGDVKTAPNELRFT--RNGNQLRV--DNPTV 171
Query 180 YFISFSK 186
+ I+F++
Sbjct 172 FNITFNQ 178
>P53519 Chaperone protein CssC [Escherichia coli]
Length=232
Score = 89.7 bits (221), Expect = 3e-25
Identities = 60/201 (30%), Positives = 109/201 (54%), Gaps = 15/201 (7%)
Query 28 TRVIFDGTASSRSFIVANQNPYPILVQTWVDHGLGDPDHDQAPFVINPPIFKMQPDAIQV 87
TRVI+ S+ S ++N YP+++Q+ V + +HD F+ PPIFKM+ ++ +
Sbjct 28 TRVIYSD--STPSVQISNNKAYPLIIQSNVWDESNNKNHD---FIATPPIFKMESESRNI 82
Query 88 LKIIYTGDQKQTDFESQFWLNLYEIPG-KKKLQSNQKPETNHQLDLSIQTQLKVFYRPAK 146
+KII T ES WL + +P +K + N+K +++SI+ +K+ YRPA
Sbjct 83 IKIIKTTINLPDSQESMRWLCIESMPPIEKSTKINRKEGRTDSINISIRGCIKLIYRPAS 142
Query 147 ILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALISN-----KNSVFIEDY 201
+ I ++LK++ N YL+ +N TPY+ISFS++ S+ K+ ++++ Y
Sbjct 143 VPSPVFNNIVEKLKWH----KNGKYLVLKNNTPYYISFSEVFFDSDKVNNAKDILYVKPY 198
Query 202 LDQMVAPNADQIYPIKYRIDD 222
++ + + I IK+ + D
Sbjct 199 SEKKIDISNRIIKKIKWAMID 219
>P35757 Chaperone protein HifB [Haemophilus influenzae]
Length=241
Score = 89.7 bits (221), Expect = 4e-25
Identities = 65/218 (30%), Positives = 113/218 (52%), Gaps = 16/218 (7%)
Query 3 LVLFTLIICLGLWGVPAIAGILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHGL- 61
L+ FT + L A A ++ TRVI+ + + N + LVQ W+D+G
Sbjct 10 LLFFTALFFTALCAFSANANVIITGTRVIYPAGQKNVIVKLENNDDSAALVQAWIDNGNP 69
Query 62 -GDPDHDQAPFVINPPIFKMQPDAIQVLKIIYTGDQK-QTDFESQFWLNLYEIPGKKKLQ 119
DP + + PFVI PP+ +++ + Q L+I +TG + D ES F+ NL +IP K +
Sbjct 70 NADPKYTKTPFVITPPVARVEAKSGQSLRITFTGGEPLPDDRESLFYFNLLDIPPKPDAE 129
Query 120 SNQKPETNHQLDLSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTP 179
K + Q ++I+++LK+FYRPA K++++ K FK + + +N TP
Sbjct 130 FLAKHGSFMQ--IAIRSRLKLFYRPA---KLSLDPFDAMKKVVFKATPKGV--LVDNQTP 182
Query 180 YFISFSKIALISNKNSVFIEDYLDQMVAPNADQIYPIK 217
Y++++ + L NK + + +MVAP + ++ K
Sbjct 183 YYMNYIGL-LHQNKPAKNV-----KMVAPFSQAVFEAK 214
>P53518 Chaperone protein CssC [Escherichia coli]
Length=232
Score = 89.0 bits (219), Expect = 7e-25
Identities = 59/201 (29%), Positives = 110/201 (55%), Gaps = 15/201 (7%)
Query 28 TRVIFDGTASSRSFIVANQNPYPILVQTWVDHGLGDPDHDQAPFVINPPIFKMQPDAIQV 87
TRVI+ S+ S ++N YP++VQ+ + + +HD F+ PPIFKM+ ++ +
Sbjct 28 TRVIYSD--STPSVQISNNKAYPLIVQSNIWDENNNKNHD---FIATPPIFKMESESRNI 82
Query 88 LKIIYTGDQKQTDFESQFWLNLYEI-PGKKKLQSNQKPETNHQLDLSIQTQLKVFYRPAK 146
+KII T + ES WL + + P +K + N+K +++SI+ +K+ Y+PA
Sbjct 83 IKIIKTNIKLPDSQESMRWLCIESMPPTEKSTKINRKEGRTDSINISIRGCIKLIYQPAS 142
Query 147 ILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALISN-----KNSVFIEDY 201
+ I ++LK++ N YL+ +N TPY+ISFS++ S+ K+ ++++ Y
Sbjct 143 VPSPVFNNIVEKLKWH----KNGKYLVLKNNTPYYISFSEVFFDSDKVNNAKDILYVKPY 198
Query 202 LDQMVAPNADQIYPIKYRIDD 222
++ + + I IK+ + D
Sbjct 199 SEKKIDISNRIIKKIKWAMID 219
>P45991 Chaperone protein HifB [Haemophilus influenzae]
Length=241
Score = 89.0 bits (219), Expect = 8e-25
Identities = 66/218 (30%), Positives = 113/218 (52%), Gaps = 16/218 (7%)
Query 3 LVLFTLIICLGLWGVPAIAGILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHGL- 61
L+ FT + L A A ++ TRVI+ + + N + LVQ W+D+G
Sbjct 10 LLFFTALFFAALCAFSANADVIITGTRVIYPAGQKNVIVKLENNDDSAALVQAWIDNGNP 69
Query 62 -GDPDHDQAPFVINPPIFKMQPDAIQVLKIIYTGDQK-QTDFESQFWLNLYEIPGKKKLQ 119
DP + + PFVI PP+ +++ + Q L+I +TG + D ES F+ NL +IP K
Sbjct 70 NADPKYTKTPFVITPPVARVEAKSGQSLRITFTGSEPLPDDRESLFYFNLLDIPPKPDAA 129
Query 120 SNQKPETNHQLDLSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTP 179
K + Q ++I+++LK+FYRPAK L M+ + K++ F ++ +N TP
Sbjct 130 FLAKHGSFMQ--IAIRSRLKLFYRPAK-LSMDSRDAMKKVVFKATPEG----VLVDNQTP 182
Query 180 YFISFSKIALISNKNSVFIEDYLDQMVAPNADQIYPIK 217
Y++++ + L NK + + +MVAP + ++ K
Sbjct 183 YYMNYIGL-LHQNKPAKNV-----KMVAPFSQAVFEAK 214
>P37923 Chaperone protein FimC [Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720)]
Length=230
Score = 86.7 bits (213), Expect = 5e-24
Identities = 65/215 (30%), Positives = 105/215 (49%), Gaps = 23/215 (11%)
Query 3 LVLFTLIICLGLWGVPAIAGILPENTRVIFDGTASSRSFIVANQNPYP-ILVQTWVDHGL 61
+VL TL L V A GI TRVI+ A S ++N + LV +W+++
Sbjct 10 IVLLTLFTSLN---VQAAGGIALGATRVIYPSAAKQTSLAISNSDTQERYLVNSWIENNA 66
Query 62 GDPDHDQAPFVINPPIFKMQPDAIQVLKIIYTGDQKQTDFESQFWLNLYEIPGKKKLQSN 121
G + F++ PP+F +P + L+IIY G D ES FW+N+ IP K
Sbjct 67 GQKEKT---FIVTPPLFVSEPKSENTLRIIYAGQPLPGDRESLFWMNVKAIPSVDK---- 119
Query 122 QKPETNHQLDLSIQTQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYF 181
E + L L+I +++K+F RPA L E+ LKF+ ++ N +L NP+ Y+
Sbjct 120 SHIEGKNVLQLAILSRIKLFVRPAN-LPQTPEDAPTLLKFS--RVGN--HLKITNPSAYY 174
Query 182 ISFSKIALISNKNSVFIEDYLDQMVAPNADQIYPI 216
++ I++ + K + M+AP +D P+
Sbjct 175 LTLVNISVGAKKID-------NVMIAPKSDMQIPL 202
>P33387 Chaperone protein SefB [Salmonella enteritidis]
Length=246
Score = 86.7 bits (213), Expect = 6e-24
Identities = 58/168 (35%), Positives = 90/168 (54%), Gaps = 10/168 (6%)
Query 22 GILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHGLGDPDHDQAPFVINPPIFKMQ 81
G+ TRVI+ A S SF + N+ YPILVQT V D +APF++ PPI K++
Sbjct 41 GLRLGTTRVIYKEDAPSTSFWIMNEKEYPILVQTQV---YNDDKSSKAPFIVTPPILKVE 97
Query 82 PDAIQVLKIIYTGDQKQTDFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQTQ--LK 139
+A LK+I T + + ES +WL + +P +SN K L++++ T +K
Sbjct 98 SNARTRLKVIPTSNLFNKNEESLYWLCVKGVPPLNDNESNNKNNITTNLNVNVVTNSCIK 157
Query 140 VFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKI 187
+ YRP K + + EIA +LK K N I + +NPT +++ + I
Sbjct 158 LIYRP-KTIDLTTMEIADKLKLERK--GNSI--VIKNPTSSYVNIANI 200
>P21646 Chaperone protein MrkB [Klebsiella pneumoniae]
Length=233
Score = 80.5 bits (197), Expect = 9e-22
Identities = 55/169 (33%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query 23 ILPENTRVIFDGTASSRSFIVANQNPYPILVQTWVDHGLGD--PDHDQAPFVINPPIFKM 80
I+ TR I+ G + ++N P L W+D+G D PD PF+I PPI ++
Sbjct 21 IIVNGTRFIYPGNEKEITVQLSNTADRPALATAWLDNGNADATPDTITTPFIITPPISRV 80
Query 81 QPDAIQVLKI-IYTGDQKQTDFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQTQLK 139
+ Q L+I + + D E+ +WLNL EIP ++++QK E + L L+I+++ K
Sbjct 81 DAKSGQTLRIKLGSNAGLAKDKETLWWLNLLEIP---PVEASQKNEGQNILQLAIRSRFK 137
Query 140 VFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIA 188
YRPA + N + A++L + N L NPTP++I+ S+I+
Sbjct 138 FIYRPAGL--GNRDAAAEKLALS----ANGSSLSVSNPTPFYITVSRIS 180
>P15319 Chaperone protein PapD [Escherichia coli]
Length=239
Score = 79.7 bits (195), Expect = 2e-21
Identities = 61/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (9%)
Query 19 AIAGILPENTRVIFDGTASSRSFIVANQNPY-PILVQTWVDHGLGDPDHDQAPFVINPPI 77
A A + + TR +FDG+ S + ++N N P L Q W+++ P + PP+
Sbjct 19 ADAAVSLDRTRAVFDGSEKSMTLDISNDNKQLPYLAQAWIENE-NQEKIITGPVIATPPV 77
Query 78 FKMQPDAIQVLKIIYTGDQKQT--DFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQ 135
+++P A ++++ T D + D ES F+ NL EIP + E + L +++Q
Sbjct 78 QRLEPGAKSMVRLSTTPDISKLPQDRESLFYFNLREIPPRS--------EKANVLQIALQ 129
Query 136 TQLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALISNKNS 195
T++K+FYRPA I E QL N K+ + ENPTPY+++ I L ++
Sbjct 130 TKIKLFYRPAAIKTRPNEVWQDQLILN--KVSGGYRI--ENPTPYYVTV--IGLGGSEKQ 183
Query 196 VFIEDYLDQMVAPNADQ-IYPIKYRIDDLKYI 226
++ M++P ++Q + Y L YI
Sbjct 184 AEEGEFETVMLSPRSEQTVKSANYNTPYLSYI 215
>P31697 Chaperone protein FimC [Escherichia coli (strain K12)]
Length=241
Score = 79.3 bits (194), Expect = 3e-21
Identities = 55/171 (32%), Positives = 94/171 (55%), Gaps = 15/171 (9%)
Query 19 AIAGILPENTRVIFDGTASSRSFIVANQNPYPI-LVQTWVDHGLGDPDHDQAPFVINPPI 77
A AG+ TRVI+ V N + L+Q+WV++ G D F++ PP+
Sbjct 34 AEAGVALGATRVIYPAGQKQEQLAVTNNDENSTYLIQSWVENADGVKD---GRFIVTPPL 90
Query 78 FKMQPDAIQVLKII-YTGDQKQTDFESQFWLNLYEIPGKKKLQSNQKPETNHQLDLSIQT 136
F M+ L+I+ T +Q D ES FW+N+ IP K + T + L L+I +
Sbjct 91 FAMKGKKENTLRILDATNNQLPQDRESLFWMNVKAIPSMDKSKL-----TENTLQLAIIS 145
Query 137 QLKVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKI 187
++K++YRPAK L + ++ A++L+ F++ N + LI NPTPY+++ +++
Sbjct 146 RIKLYYRPAK-LALPPDQAAEKLR--FRRSANSLTLI--NPTPYYLTVTEL 191
>P33407 Chaperone protein MyfB [Yersinia enterocolitica]
Length=267
Score = 76.3 bits (186), Expect = 6e-20
Identities = 59/198 (30%), Positives = 96/198 (48%), Gaps = 18/198 (9%)
Query 28 TRVIFD-GTASSRSFIVANQNPYPILVQTWVDHGLGDPDHDQAPFVINPPIFKMQPDAIQ 86
TR+I+ + S V N YPILVQT V G+ H APF+ PP+F++
Sbjct 49 TRIIYPLSSVKGVSLSVTNPQDYPILVQTQVK---GEDKHSPAPFMATPPLFRLDAGMRG 105
Query 87 VLKIIYTGDQKQTDFESQFWLNLYEIPGK--------KKLQSNQKPETNHQLDLSIQTQL 138
+++ TG D ES WL + +P K + + N + N + LS+ T +
Sbjct 106 RVRVTRTGGNFPEDRESLQWLCITGVPPKEGDVWDNSQHDKKNNMQDVNLNILLSVGTCM 165
Query 139 KVFYRPAKILKMNIEEIAKQLKFNFKKIDNQIYLICENPTPYFISFSKIALISNKNSVFI 198
K+ RP + L+ EE+A +L ++ N L NPTP++++F ++L NKN
Sbjct 166 KLLVRPDQ-LRQKPEEMAGKLIWH----RNGQQLQVNNPTPFYMNFKSVSL-GNKNIKLS 219
Query 199 EDYLDQMVAPNADQIYPI 216
+ VAP A++ + +
Sbjct 220 SAGNENYVAPFAERSFSL 237
Lambda K H a alpha
0.325 0.142 0.432 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 609260
Database: deb1ada4a705f622f5e5630c66527514.SwissProt.fasta
Posted date: May 8, 2024 8:34 PM
Number of letters in database: 3,587
Number of sequences in database: 15
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
Loading
Data ...
