BLASTP 2.12.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: 9843142a9000200004dce1d729fce377.SwissProt.fasta
17 sequences; 10,177 total letters
Query= ACIAD0134
Length=56
Score E
Sequences producing significant alignments: (Bits) Value
P0CF60 Putative transposase InsD for insertion element IS2E [Esch... 49.3 4e-12
P0CF56 Transposase InsD for insertion element IS2H [Escherichia c... 49.3 5e-12
P0CF55 Transposase InsD for insertion element IS2F [Escherichia c... 49.3 5e-12
P0CF54 Transposase InsD for insertion element IS2D [Escherichia c... 49.3 5e-12
P0CF53 Transposase InsD for insertion element IS2A [Escherichia c... 49.3 5e-12
P0C5W5 Transposase InsD for insertion element IS2A/D/F/H/I/K [Esc... 49.3 5e-12
P0CF64 Transposase InsD for insertion element IS2-12 [Escherichia... 49.3 5e-12
P0CF63 Transposase InsD for insertion element IS2-11 [Escherichia... 49.3 5e-12
P0CF62 Transposase InsD for insertion element IS2-10 [Escherichia... 49.3 5e-12
P0CF61 Transposase InsD for insertion element IS2-9 [Escherichia ... 49.3 5e-12
P51026 Insertion element IS2A uncharacterized 48.2 kDa protein [E... 49.3 5e-12
P0A3L3 Insertion element IS136 uncharacterized protein Atu4601 [A... 44.7 2e-10
P0A3L4 Insertion element IS136 uncharacterized protein [Agrobacte... 44.7 2e-10
O92956 Gag-Pol polyprotein [Rous sarcoma virus subgroup B (strain... 31.6 1e-05
Q04095 Gag-Pol polyprotein [Avian leukosis virus subgroup A (isol... 31.6 1e-05
P03354 Gag-Pol polyprotein [Rous sarcoma virus subgroup C (strain... 31.6 1e-05
Q7SQ98 Gag-Pol polyprotein [Avian leukosis virus] 31.6 1e-05
>P0CF60 Putative transposase InsD for insertion element IS2E [Escherichia
coli (strain K12)]
Length=218
Score = 49.3 bits (116), Expect = 4e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 97 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 134
>P0CF56 Transposase InsD for insertion element IS2H [Escherichia
coli (strain K12)]
Length=301
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 180 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 217
>P0CF55 Transposase InsD for insertion element IS2F [Escherichia
coli (strain K12)]
Length=301
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 180 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 217
>P0CF54 Transposase InsD for insertion element IS2D [Escherichia
coli (strain K12)]
Length=301
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 180 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 217
>P0CF53 Transposase InsD for insertion element IS2A [Escherichia
coli (strain K12)]
Length=301
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 180 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 217
>P0C5W5 Transposase InsD for insertion element IS2A/D/F/H/I/K
[Escherichia coli]
Length=301
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 180 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 217
>P0CF64 Transposase InsD for insertion element IS2-12 [Escherichia
coli (strain K12)]
Length=307
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 186 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 223
>P0CF63 Transposase InsD for insertion element IS2-11 [Escherichia
coli (strain K12)]
Length=307
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 186 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 223
>P0CF62 Transposase InsD for insertion element IS2-10 [Escherichia
coli (strain K12)]
Length=307
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 186 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 223
>P0CF61 Transposase InsD for insertion element IS2-9 [Escherichia
coli (strain K12)]
Length=307
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 186 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 223
>P51026 Insertion element IS2A uncharacterized 48.2 kDa protein
[Escherichia coli]
Length=424
Score = 49.3 bits (116), Expect = 5e-12
Identities = 24/40 (60%), Positives = 29/40 (73%), Gaps = 3/40 (8%)
Query 4 MEKRFGAVSCLPH-PIEWLTDNGSCYMTKSTRQFVHVLGL 42
+E+RFG + LP P+EWLTDNGSCY TRQF +LGL
Sbjct 303 VERRFG--NDLPSSPVEWLTDNGSCYRANETRQFARMLGL 340
>P0A3L3 Insertion element IS136 uncharacterized protein Atu4601
[Agrobacterium fabrum (strain C58 / ATCC 33970)]
Length=195
Score = 44.7 bits (104), Expect = 2e-10
Identities = 23/45 (51%), Positives = 26/45 (58%), Gaps = 1/45 (2%)
Query 4 MEKRFGAVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLICTTP 48
+EKRF A PH IE L+DNGS Y + TR F L L C TP
Sbjct 85 VEKRFHATRA-PHAIEHLSDNGSAYTARDTRLFAQALNLTPCFTP 128
>P0A3L4 Insertion element IS136 uncharacterized protein [Agrobacterium
tumefaciens (strain T37)]
Length=195
Score = 44.7 bits (104), Expect = 2e-10
Identities = 23/45 (51%), Positives = 26/45 (58%), Gaps = 1/45 (2%)
Query 4 MEKRFGAVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLICTTP 48
+EKRF A PH IE L+DNGS Y + TR F L L C TP
Sbjct 85 VEKRFHATRA-PHAIEHLSDNGSAYTARDTRLFAQALNLTPCFTP 128
>O92956 Gag-Pol polyprotein [Rous sarcoma virus subgroup B (strain
Schmidt-Ruppin)]
Length=1603
Score = 31.6 bits (70), Expect = 1e-05
Identities = 14/33 (42%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 10 AVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGL 42
A++ L P TDNGSC+ +KSTR+++ G+
Sbjct 1388 AIAVLGRPKAIKTDNGSCFTSKSTREWLARWGI 1420
Score = 18.9 bits (37), Expect = 0.37
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (9%)
Query 11 VSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLI 44
+S P P WL S TK+ ++ VL LLI
Sbjct 1047 LSTHPRPCLWLF---STQPTKAFTAWLEVLTLLI 1077
>Q04095 Gag-Pol polyprotein [Avian leukosis virus subgroup A (isolate
RSA)]
Length=1603
Score = 31.6 bits (70), Expect = 1e-05
Identities = 14/33 (42%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 10 AVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGL 42
A++ L P TDNGSC+ +KSTR+++ G+
Sbjct 1388 AIAVLGRPKAIKTDNGSCFTSKSTREWLARWGI 1420
Score = 18.9 bits (37), Expect = 0.37
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (9%)
Query 11 VSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLI 44
+S P P WL S TK+ ++ VL LLI
Sbjct 1047 LSTHPRPCLWLF---STQPTKAFTAWLEVLTLLI 1077
>P03354 Gag-Pol polyprotein [Rous sarcoma virus subgroup C (strain
Prague)]
Length=1603
Score = 31.6 bits (70), Expect = 1e-05
Identities = 14/33 (42%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 10 AVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGL 42
A++ L P TDNGSC+ +KSTR+++ G+
Sbjct 1388 AIAVLGRPKAIKTDNGSCFTSKSTREWLARWGI 1420
Score = 18.9 bits (37), Expect = 0.37
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (9%)
Query 11 VSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLI 44
+S P P WL S TK+ ++ VL LLI
Sbjct 1047 LSTHPRPCLWLF---STQPTKAFTAWLEVLTLLI 1077
>Q7SQ98 Gag-Pol polyprotein [Avian leukosis virus]
Length=1603
Score = 31.6 bits (70), Expect = 1e-05
Identities = 14/33 (42%), Positives = 22/33 (67%), Gaps = 0/33 (0%)
Query 10 AVSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGL 42
A++ L P TDNGSC+ +KSTR+++ G+
Sbjct 1388 AIAVLGRPKAIKTDNGSCFTSKSTREWLARWGI 1420
Score = 18.9 bits (37), Expect = 0.37
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 3/34 (9%)
Query 11 VSCLPHPIEWLTDNGSCYMTKSTRQFVHVLGLLI 44
+S P P WL S TK+ ++ VL LLI
Sbjct 1047 LSTHPRPCLWLF---STQPTKAFTAWLEVLTLLI 1077
Lambda K H a alpha
0.335 0.144 0.498 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 251342
Database: 9843142a9000200004dce1d729fce377.SwissProt.fasta
Posted date: May 19, 2024 7:46 PM
Number of letters in database: 10,177
Number of sequences in database: 17
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40
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Data ...
